LOC110485637 (LOC106590256)


Basic Information

Item Value
gene id LOC110485637
gene name LOC106590256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12711684 ~ 12720418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556737.2
CATTACAGAATGGGCATTTCTGCAAGTATCGACTGATACTGACTCAATGTAGTCGGAGGTACACTCTGCCGACCCGCAACTCGGCTCCATTGAAAAGTATGCAGTTGAGTTATATAAATGACTATACAGaccaagaaagaaacaaaaaatgctgaataataatgatgatgcacTTCTCTTCATTCTAGATCAATGTCAAGGTGACATTCCTATTTAATAGCCTATGTAAGCAAAAAATAGACACATccgtagattttttttttgccacACTGTCACTGGGTGGGCCAGTCAAAGGAAGATTAAGCGTCGATGCGTCGTACGTATTTTAGGAGGCGGAAGGCTTGCATTACCTGTATGGACTTCGACAATCCTGTGTGGCGTGGTAGGCTACTGAACGACACCTCACACTCAAACAACTATCTCAAACTTAAACTTGGTTCCATGTTGTCATCGACTAAAAGCCGAAAACAATAAGTATTTCCCCGCCTCAATAGCCAATGGACCTGACTGGCAGCGATGGGTCAGAGTTCTGATACTTTTTGTTAGGAGGGCAACTCGCGGACTACCCCCCCGTGGATCTCGCACGAGCTCAGTGATCAGGATGATACCAGTAACTGAGTTCCGGAACTTTGCCTCATCACAGAACCCCGAGTTCCGGGTTCTAAAGCCATGGTGGGATGTGTTCTCGGAATACCTATGTATCGCCATGCTCATGATCGGAGTGTTCGGATGCACCTTACAGCTCACCCAGGAGAAGATCTCCTGCCTTCCCAGCCATTTCTCCAGCTCAACTCCAGAGGCCATCGATTGCAGCCACATCCGCAGCCACGGCGAGAACGAGACATGGGAGCACCATACCTTAGTCAAGCCCGTCagcCCTATCATCCGGGAGGTGTACGGACGCAAGAACAACCTTGACATCCACCAGTACATCTTCGTCAACCATTACTGCTACGAACGAGCCGTGCACTGGTACGGCAAGTACTTCCCCTACCTGGTGGTAATCCACACATTGATCTTCATGGTGGCCAGCAGCTTCTGGTTCAAGTTCCCTGGGACGTCATCCAAGATCGAGATCTTTGTCACCATCCTGGGGAAGTGTTTCGACTCGCCATGGACCACCCGGGCGCTGAGTGAGGTGTCTGAGGAGCGTGGCGAGGAAAAGATGGTGATATGGAGGAAGAACACCATTTCGAAGTCGATGGCATCGGCGTTCGCTGCCTCGCCGGACAGTGAGCCAGGGGCGGAGGAGGAGATGGTGGGACTTCTCCGGCAGTCGTCCATCAAGTCAAATCCAGAGAAGAAGAACCCGGAACTACAGCCAGCGGATTCACTCTTGGACAGGAAGGAAGGGGAGCAGGCTAAAGCTCTGTTCGAGAAGGTGAAGAAGTTCAGAACTCATGTGGAGGAGGCGGATCTGCTCTATCTGATGTACGTTCTCCAGACCTCCCTCAAGGTCTTCAAGTTCGTCCTCATCACCTGTTACAGCGCTGCATTGGTCCCCAACATTGAGATTGTAGTTCGTTGCTCAGTTCCTCCGGAGCTGACCGGCTTCGAAATCTACTGCTGCAACCACACCAAAGCCCACCTCTTCTCCAAGCTGTGCTACTGTTACATCTGCTTTGTGGGAGTCTACGGACTTCTGTGCATCTACACCCTCTATTGGCTCTTCCATCGACCTCTTAAAGAGTACTCCTTTGAGCATGTTAGGCTGGAGACGGGTATCAACGACATCCCAGACGTCAAGAACGACTTTGCGTTCCTCCTCCATCTCAGCGACCAGTATGATGCGCTCTACTCCAAACGCTTCGCCGTCTTCCTCTCCGAGGTCAGCGAGAGCCGTCTTCGCCAGGTCAACCTCAACCACGAGTGGCCCGGCAAGAAGCTGCGGGGACGCCTCTCCCGGAACGCCGACAACCGTCAGGAACTCCATCTCTTCATGCTCCCGGGTCTCCCCGACACCGTCTTCGATGTCCCTGAAGTGGAATCTCTCAAACTGGAGCTGCTAAACAACGTGACTATTTCATCCAGTGTAATCCAGCTAGGTTCTCTCCAGGAGCTGTCCCTCATCCACTGCCCTGCCAAGCTCCAGCTGGCTGCCCTGACCCACCTCAGAGAGAACCTCAAGGTCCTCCGGCTAGCCTTTGAAGGACTGGAGCAGGTACCAATGTGGATGTACACACTTCAGAGTCTCGAAGAGCTCCACCTGAGTGGCACTTTGACCCACGAACTCTCCCGCAGTGCAACCTTAGACTCCCTGAGAGAACTCAAAGCTCTAAGAGTCCTGACGCTTCGCAGCCGCCTAACCAAGATCCCTCCGAGTGTTGGGGATGTGGCAGTCAACCTCCAGCGTCTCTGCATCTATAATGAGGGCCTCAAACTACAAGCCTTCAGCAGCCTAAAGAAGTTGACCAACCTGGCCTCTCTGGAGCTGATAGGATGTGAGCTGGAGCGCATCCCCAGCGCGGTCTTCAGCCTGTCAAGCCTGCAGGAACTGGACCTGAAGGAAAACAAGCTGACGACAGTAGAGGAGATCTTGAGTCTACAACATTGCCGGCGCCTGGTAACTCTTCGTCTCTGGCACAACGGCATCACCTACATCCCTGAGCACATTGCTAAGCTGAAGTCCTTAGAGACGCTGAACGTCAGTTGGAACAAGCTCCGGAAACTTCCGTCACGTCTCTTCTACTGCACCAAGCTCCGGCACTTGAACCTGTCCCACAACCAGCTTACGTCGCTACCAGCCGAGGTAGGGATACTCCAGAGTCTCCAGTTCTTCTCAGCAGCCTTTAACTCCCTGGAACAGCTGCCGGAGGAGCTGTTCTCCTGCAAGAGGCTCAAGACTCTGGCGTTGGGAAACAACTGCCTGCTCTCGCTTAGCCCCAGGGTGGCTAACTTGGCCCAGCTAGTGCGCCTGGAGCTCAAGGGGAACAGACTAGACTCTCTACCGCCGGAGATAGGGGACTGTCCCCTTTTGAAGACCAGTAATCTTGTGGTAGAGGACAACCTGCTGGATCTACTGCCGTCGGATGTACGGAGCAGGATGAAAGACAGTTGAGAGACAGTTACTTTGCTTACTTTAAAGGGCTTTTTACTCCTCCTGGTGCATAGGCCGCTGACAACAATTGAGAGATAGGCTAAAGGGTCAGGTTTGGTTGCTCTTGATTGGTCAGAGATGTCAGCTCCGTGGGAAAGGATTGGACCTCTGGTTGGGTTTGCAGTTGTGAGGACAAGAGGGATTTGCTTTTTTAAAGGCAAATAAGAGCCCAAAAGTACGAGAGGACATGTAAGGACGGAACTATGGACACACCGTAGCATATAAGGTTCAAGAAAGGACCTTTTGGAGGGACATACAGTATAGCAATAGAATAATTagcaaatataatatattttggtCAAATCCTCTTTAAATCATGTTCACCTACTTATTGCCATGACTGTActtttaaacatgttttttaatACAAAGATGTCTA

Function

NR:

description
volume-regulated anion channel subunit LRRC8C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556737.2 True 3476 mRNA 0.51 4 12711684 12720418

Neighbor

gene id symbol gene type direction distance location
LOC110487266 NA coding downstream 263121 12416017 ~ 12448563 (-)
LOC110485629 NA coding downstream 351354 12358008 ~ 12366285 (-)
LOC110485617 LOC106590349 coding downstream 773258 11906902 ~ 11938426 (-)
LOC110487235 xpnpep1 coding downstream 805901 11892173 ~ 11905783 (-)
LOC110485534 LOC106564462 coding downstream 835862 11873981 ~ 11875822 (-)
LOC118938209 LOC106564503 coding upstream 2124 12722542 ~ 12744218 (-)
LOC110493438 LOC106564504 coding upstream 33768 12754186 ~ 12759727 (-)
LOC110485521 LOC106589832 coding upstream 151467 12871885 ~ 12878585 (-)
LOC110485520 LOC106590222 coding upstream 160530 12880948 ~ 12883307 (-)
LOC110485643 LOC106590024 coding upstream 180204 12900622 ~ 12904681 (-)
G1144412 NA non-coding downstream 1064 12709878 ~ 12710620 (-)
G1144401 NA non-coding downstream 12321 12698250 ~ 12699363 (-)
G1144394 NA non-coding downstream 21297 12690179 ~ 12690387 (-)
G1144392 NA non-coding downstream 23694 12687699 ~ 12687990 (-)
G1144390 NA non-coding downstream 26828 12684235 ~ 12684856 (-)
G1144418 NA non-coding upstream 27909 12748327 ~ 12748610 (-)
G1144425 NA non-coding upstream 45260 12765678 ~ 12767371 (-)
G1144427 NA non-coding upstream 52807 12773225 ~ 12776413 (-)
G1144428 NA non-coding upstream 54553 12774971 ~ 12777529 (-)
G1144338 NA other downstream 93526 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 96125 12614976 ~ 12615559 (-)
G1143771 NA other downstream 629802 12043108 ~ 12081882 (-)
G1143743 NA other downstream 759116 11951595 ~ 11952568 (-)
G1145035 NA other upstream 404452 13124870 ~ 13126598 (-)
LOC110485655 rab3d other upstream 445096 13163816 ~ 13178960 (-)
G1145046 LOC106589870 other upstream 572517 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 636656 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 942762 13657453 ~ 13665295 (-)

Expression


Co-expression Network