LOC110485643 (LOC106590024)


Basic Information

Item Value
gene id LOC110485643
gene name LOC106590024
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12900622 ~ 12904681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556748.2
CGTCACTTCTGTGTATACAGTTTGTAAACAAAGCCAAAACAAAGATGGATTCATCAAGAGGTTTAATCTAAAAATATAGTCAGATCGAATAACCAAATAGCACAAATTGAAATCGGTGTCATTTACAGTTCACTGACTTAGCTAGCTGTCCTGTTCGTAGTGGGGATTGTGTGTGCTGGTCCAGTTCAATGGGGAACTGTTTGTCTTCGCAAGGCGCCGACGACTTGTCTCTCCTCAACGAGTCCCAGGAAGCCAGTGTTCCAGGGGAGCCCCCACCGCCTTACCAGGAGCGTGTTCAGGCGCCAGTGTACCACCCCACCCCCAGTCAGACGTGCCTGGCCAGCCAGCTGACAGAGGAGGAGCAGGTCCGTATCGCCCAGCGGATTGGCCTCATCCACCACCTCCCCAGAGGCATCTTCGACCCCGGCTCTGAGCCCTCTGACAAGAAAGTCAAAGAGtgtgcgatctgtatgaatgacTTTGAGTACGGCGACCCCATCCGGTTCCTTCCCTGCCTGCACATCTACCACGTGGACTGCATCGACACCTGGCTGATGAGGTCCTTCACCTGTCCTTCCTGTATGGAGCCTGTGGATGCCGCCCTGCTCTCCTCTTATGAGACCAACTGAACTGGTCTCATAGGAGACCAGTTCACTCATCTGAGCAGTCTCTGgctgggtcctgttcattaggccaaacagaagaaaactgattaaaacagggagggacttgccctggacttgtccaataagaagtgCTTGTTCAATTTTTTTTCAGTTGCAAAACTATTCCCTATTTAAtgtactacttttcaccagagccttATAGGCCCTGATCCAAAGTAGTGcattaaatagggaatagtgtgcacaCAATCCTAGAAACTTCCCCTCTAACAGAGGTGCCTGCCAAACGCCCTTACACATCACCTCTTTAACCTGGATGTCCTAGTCACACAGCCCTGGGAGgatatcaaaatatatatattttttaaatgtaacctttatttaactagtgaagtcggttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggacggcgctgggccaattgtgtgccgccctatggggacagccaattgtgatacagtctggatttgaaccaggtggtctgtagtgacgcctctagcactgagatgcagtgtcttagaccactgcgccacttggaagCTCCATATGTAGGGCGTACCACACTGAGTGTGTTGAAAGTGGGGTGTTCTACTCTGTATTGGGGCTTTTGGAATTAGGAACGTCTGTCTTTCGCCTTTTCAGACTTGTTTTCAAATACATGTGAAGTGAAGGATATAGATGGAGATCTTTAGAAGTCATGATGAGCGATATTATTGACAACTGATTTCACCTTTGGATGATCTGAGGGTGGTAGACTAGAGATTGGCCCATTAGTTTAGTTTATGTAGGCTGGTCTTGGATCTGTTAGTGCAActgatggcacaaacagatctaTATCTTTGTTTATGTGGTTGGTTTATTTTAATTCCCTTTTCAATCATCCCCCTCCAGACTAAAATGTGCAATATGATGTGAGGAAGTGCTAGAATTGCACcgttctgattggtcaaaagaaggTGACCCCCGACCTTAACACTGCTGTCTCGGCCAATTAGCTTTAAGACGGGTATGGCCTTGAATGTCTCTCAAAAAAGCACAGGGCTCTTGACTAGAATGCAAACATTTTTCTCATTAAATGGcaatcatagagagagagaaaagttcaCAAAGTAATGAGATATGAGAATAAGCTATGAGGTCTCCATCCCATGCCGGTCTAGTAGGTTACCTCATGACTTACTACTGGCCTCATACCTTTATTGGAGATGTTGGATTTGTATgtatgttgttttacagggtggGTTGTTGTAGCTGTTAGTCCAGATctatttgtgctgtcttgccaaggTGGCCAGCCTTACTGGGCTAGCTCTTAGTACCTTAAACTGCATTTTCACCTTGGATCTTTTTCCTTACAAAGCTTTGCCTTGACTGTGTGCTGTCTTACTCTTATGAGATCatggcttgttgttgttgttcattcTTATGTTTACTGTTAGTGAGTGACTTTTGCGTCCAAAATGGCAAACtaatccctatataatgcactacttttgagcaaaGCACGATGCAGGAACTGGTCAagagcagtgcactatgtagggattagggtgccattttggacgtggCCCAAAATGCTGTGCCATTATCTATCCCCGAATTCTATGCACCTTGGGATCTCCTCTGGTACCGTGTAGGTCTGGGACTGTATTCACAAAGAGTCTTAGAGTAGGAGACCGTTTTGCCTTTTGGATCAGTTATATGGACTCCTAGTCTTTGTGACGACAGGCCTTGAATCAGGACAGAGGAAACATCTTTTGTTCTCCTTTTCCCTCTTCCTTCTTCTATTTCTCCTACTACTCACTCTATTGTCTCTTTGAATAACTTTATTGTAGAAGTGTTtgacaagagagaaagagaatgaataCGTGTCAAAATATAATTTACACTGTTTTGGATACTTTGTGTAAAGGTTGTATCTAGAGTGTTTTTTCCAATGTTGTCAGAAAATGTGTTTGTGAATATAgatctgttttttttgtattgtaGTGAGGATCTATTCTACATGATTGAATTCCAGAGGCTTTTTAAACTGTTTTGTTGATTGATTATTGGACTAAAATGAATAGGAAACTCTTATTGATTGACTGTGGTTTGATACTAACAAAGTAAGGACAAGTGAGAGAGGGTACAGACTCAAACTGAGGAGAATATAATGGATTGTGAGTTGAACCCATTCTGAATGTAACTATCTGATCGTGGACATTACTGTGATGAAGTCAAAACCAGGAGCGTATTTGAAATGTACCCTCATCACCAACTCTCTTCAGGTGAAAGTGGGGAAAGTATGGCTGCTATTCAGTTCAGTCCTAGACCTATGCCCTTTTTAGGTGAACGTGAGCCAACTCCTGTGAAGTACAATCATTTCTGATACTTGTGTCATTGTTTTAGTGCTCCTTGAAGCCGGAGATGGAGAGTGTGTGTACTGAAAGAAGAATATGATTAGTCAGACTGTTCCTGGCTGCTGTTTCTGGgttttgtaatgtgtgtgtgcaatGAGGGCTCAGCTTTTAGGAAAAACTACAATAAAAAGTGGATGCCAAATCTAACCTTCTTCA
>TU1305965
TCTTATTGATTGACTGTGGTTTGATACTAACAAAGTAAGGACAAGTGAGAGAGGGTACAGACTCAAACTGAGGAGAATATAATGGATTGTGAGTTGAACCCATTCTGAATGTAACTATCTGATCGTGGACATTACTGTGATGAAGTCAAAACCAGGAGCGTATTTGAAATGTACCCTCATCACCAACTCTCTTCAGGTGAAAGTGGGGAAAGTATGGCTGCTATTCAGTTCAGTCCTAGACCTATGCCCTTTTTAGGTGAACGTGAGCCAACTCCTGTGAAGTACAATCATTTCTGATACTTGTGTCATTGTTTTAGTGCTCCTTGAAGCCGGAGATGGAGAGTGTGTGTACTGAAAGAAGAATATGATTAGTCAGACTGTTCCTGGCTGCTGTTTCTGGgttttgtaatgtgtgtgtgcaatGAGGGCTCAGCTTTTAGGAAAAACTACAATAAAAAGTGGATGCCAAATCTA
>TU1305966
tattttttaaatgtaacctttatttaactagtgaagtcggttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggacggcgctgggccaattgtgtgccgccctatggggacagccaattgtgatacagtctggatttgaaccaggtggtctgtagtgacgcctctagcactgagatgcagtgtcttagaccactgcgccacttggaagCTCCATATGTAGGGCGTACCACACTGAGTGTGTTGAAAGTGGGGTGTTCTACTCTGTATTGGGGCTTTTGGAATTAGGAACGTCTGTCTTTCGCCTTTTCAGACTTGTTTTCAAATACATGTGAAGTGAAGGATATAGATGGAGATCTTTAGAAGTCATGATGAGCGATATTATTGACAACTGATTTCACCTTTGGATGATCTGAGGGTGGTAGACTAGAGATTGGCCCATTAGTTTAGTTTATGTAGGCTGGTCTTGGATCTGTTAGTGCAActgatggcacaaacagatctaTATCTTTGTTTATGTGGTTGGTTTATTTTAATTCCCTTTTCAATCATCCCCCTCCAGACTAAAATGTGCAATATGATGTGAGGAAGTGCTAGAATTGCACcgttctgattggtcaaaagaaggTGACCCCCGACCTTAACACTGCTGTCTCGGCCAATTAGCTTTAAGACGGGTATGGCCTTGAATGTCTCTCAAAAAAGCACAGGGCTCTTGACTAGAATGCAAACATTTTTCTCATTAAATGGcaatcatagagagagagaaaagttcaCAAAGTAATGAGATATGAGAATAAGCTATGAGGTCTCCATCCCATGCCGGTCTAGTAGGTTACCTCATGACTTACTACTGGCCTCATACCTTTATTGGAGATGTTGGATTTGTATgtatgttgttttacagggtggGTTGTTGTAGCTGTTAGTCCAGATctatttgtgctgtcttgccaaggTGGCCAGCCTTACTGGGCTAGCTCTTAGTACCTTAAACTGCATTTTCACCTTGGATCTTTTTCCTTACAAAGCTTTGCCTTGACTGTGTGCTGTCTTACTCTTATGAGATCatggcttgttgttgttgttcattcTTATGTTTACTGTTAGTGAGTGACTTTTGCGTCCAAAATGGCAAACtaatccctatataatgcactacttttgagcaaaGCACGATGCAGGAACTGGTCAagagcagtgcactatgtagggattagggtgccattttggacgtggCCCAAAATGCTGTGCCATTATCTATCCCCGAATTCTATGCACCTTGGGATCTCCTCTGGTACCGTGTAGGTCTGGGACTGTATTCACAAAGAGTCTTAGAGTAGGAGACCGTTTTGCCTTTTGGATCAGTTATATGGACTCCTAGTCTTTGTGACGACAGGCCTTGAATCAGGACAGAGGAAACATCTTTTGTTCTCCTTTTCCCTCTTCCTTCTTCTATTTCTCCTACTACTCACTCTATTGTCTCTTTGAATAACTTTATTGTAGAAGTGTTtgacaagagagaaagagaatgaataCGTGTCAAAATATAATTTACACTGTTTTGGATACTTTGTGTAAAGGTTGTATCTAGAGTGTTTTTTCCAATGTTGTCAGAAAATGTGTTTGTGAATATAgatctgttttttttgtattgtaGTGAGGATCTATTCTACATGATTGAATTCCAGAGGCTTTTTAAACTGTTTTGTTGATTGATTATTGGACTAAAATGAATAGGAAACTCTTATTGATTGACTGTGGTTTGATACTAACAAAGTAAGGACAAGTGAGAGAGGGTACAGACTCAAACTGAGGAGAATATAATGGATTGTGAGTTGAACCCATTCTGAATGTAACTATCTGATCGTGGACATTACTGTGATGAAGTCAAAACCAGGAGCGTATTTGAAATGTACCCTCATCACCAACTCTCTTCAGGTGAAAGTGGGGAAAGTATGGCTGCTATTCAGTTCAGTCCTAGACCTATGCCCTTTTTAGGTGAACGTGAGCCAACTCCTGTGAAGTACAATCATTTCTGATACTTGTGTCATTGTTTTAGTGCTCCTTGAAGCCGGAGATGGAGAGTGTGTGTACTGAAAGAAGAATATGATTAGTCAGACTGTTCCTGGCTGCTGTTTCTGGgttttgtaatgtgtgtgtgcaatGAGGGCTCAGCTTTTAGGAAAAACTACAATAAAAAGTGGATGCCAAATCTA
>TU1305968
aaaagttcaCAAAGTAATGAGATATGAGAATAAGCTATGAGGTCTCCATCCCATGCCGGTCTAGTAGGTTACCTCATGACTTACTACTGGCCTCATACCTTTATTGGAGATGTTGGATTTGTATgtatgttgttttacagggtggGTTGTTGTAGCTGTTAGTCCAGATctatttgtgctgtcttgccaaggTGGCCAGCCTTACTGGGCTAGCTCTTAGTACCTTAAACTGCATTTTCACCTTGGATCTTTTTCCTTACAAAGCTTTGCCTTGACTGTGTGCTGTCTTACTCTTATGAGATCatggcttgttgttgttgttcattcTTATGTTTACTGTTAGTGAGTGACTTTTGCGTCCAAAATGGCAAACtaatccctatataatgcactacttttgagcaaaGCACGATGCAGGAACTGGTCAagagcagtgcactatgtagggattagggtgccattttggacgtggCCCAAAATGCTGTGCCATTATCTATCCCCGAATTCTATGCACCTTGGGATCTCCTCTGGTACCGTGTAGGTCTGGGACTGTATTCACAAAGAGTCTTAGAGTAGGAGACCGTTTTGCCTTTTGGATCAGTTATATGGACTCCTAGTCTTTGTGACGACAGGCCTTGAATCAGGACAGAGGAAACATCTTTTGTTCTCCTTTTCCCTCTTCCTTCTTCTATTTCTCCTACTACTCACTCTATTGTCTCTTTGAATAACTTTATTGTAGAAGTGTTtgacaagagagaaagagaatgaataCGTGTCAAAATATAATTTACACTGTTTTGGATACTTTGTGTAAAGGTTGTATCTAGAGTGTTTTTTCCAATGTTGTCAGAAAATGTGTTTGTGAATATAgatctgttttttttgtattgtaGTGAGGATCTATTCTACATGATTGAATTCCAGAGGCTTTTTAAACTGTTTTGTTGATTGATTATTGGACTAAAATGAATAGGAAACTCTTATTGATTGACTGTGGTTTGATACTAACAAAGTAAGGACAAGTGAGAGAGGGTACAGACTCAAACTGAGGAGAATATAATGGATTGTGAGTTGAACCCATTCTGAATGTAACTATCTGATCGTGGACATTACTGTGATGAAGTCAAAACCAGGAGCGTATTTGAAATGTACCCTCATCACCAACTCTCTTCAGGTGAAAGTGGGGAAAGTATGGCTGCTATTCAGTTCAGTCCTAGACCTATGCCCTTTTTAGGTGAACGTGAGCCAACTCCTGTGAAGTACAATCATTTCTGATACTTGTGTCATTGTTTTAGTGCTCCTTGAAGCCGGAGATGGAGAGTGTGTGTACTGAAAGAAGAATATGATTAGTCAGACTGTTCCTGGCTGCTGTTTCTGGgttttgtaatgtgtgtgtgcaatGAGGGCTCAGCTTTTAGGAAAAACTACAATAAAAAGTGGATGCCAAATCTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556748.2 False 3226 mRNA 0.44 4 12900622 12904681
TU1305965 False 474 lncRNA 0.41 1 12900632 12901105
TU1305966 False 2232 lncRNA 0.41 1 12900632 12902863
TU1305968 True 1452 lncRNA 0.40 1 12900632 12902083

Neighbor

gene id symbol gene type direction distance location
LOC110485520 LOC106590222 coding downstream 17315 12880948 ~ 12883307 (-)
LOC110485521 LOC106589832 coding downstream 22037 12871885 ~ 12878585 (-)
LOC110493438 LOC106564504 coding downstream 140895 12754186 ~ 12759727 (-)
LOC118938209 LOC106564503 coding downstream 156404 12722542 ~ 12744218 (-)
LOC110485637 LOC106590256 coding downstream 180204 12711684 ~ 12720418 (-)
LOC110485647 LOC106589946 coding upstream 4081 12908759 ~ 13083882 (-)
LOC110487275 LOC106589720 coding upstream 237062 13141743 ~ 13143937 (-)
LOC110516103 LOC106589920 coding upstream 239394 13144075 ~ 13151846 (-)
LOC110485650 LOC106589714 coding upstream 249455 13154136 ~ 13161168 (-)
LOC110485655 rab3d coding upstream 259135 13163816 ~ 13178960 (-)
G1144978 NA non-coding downstream 9014 12891276 ~ 12891608 (-)
G1144975 NA non-coding downstream 30497 12869193 ~ 12870125 (-)
G1144939 NA non-coding downstream 72801 12827255 ~ 12827821 (-)
G1144936 NA non-coding downstream 78197 12821663 ~ 12822425 (-)
G1144438 NA non-coding downstream 108424 12791935 ~ 12792198 (-)
G1144987 NA non-coding upstream 27906 12932587 ~ 12933297 (-)
G1145019 NA non-coding upstream 145327 13050008 ~ 13053000 (-)
G1145035 NA non-coding upstream 220189 13124870 ~ 13126598 (-)
G1145051 NA non-coding upstream 257209 13161890 ~ 13162308 (-)
G1144338 NA other downstream 282464 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 285063 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 534337 12358008 ~ 12366285 (-)
G1143771 NA other downstream 818740 12043108 ~ 12081882 (-)
G1143743 NA other downstream 948054 11951595 ~ 11952568 (-)
G1145046 LOC106589870 other upstream 388254 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 452393 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 758499 13657453 ~ 13665295 (-)

Expression


Co-expression Network