LOC110487275 (LOC106589720)


Basic Information

Item Value
gene id LOC110487275
gene name LOC106589720
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13141743 ~ 13143937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559193.2
GTGAGAACACAGGACTAATGGCATTATGATGGGCCATAACAAGGGAGCTGGGCTTTATACCCACGGAACATAAACCCATTATGACTTTACCACCACATGTAGTGAAAGCCCCTTGTTTGGCTAGGTATTATTCTGTTGATACAGGGTAGCTCTCAAACTCACATCCTCAGAGCTTAGCAAAACTCTATAGGACTACTTCAAATGTCTTCACCACCTTTCAAACACTCACCTGTAATAAACGTAAACCCTTTGAAGTTGTCAATGTCAATGGATCTTATGACCCAGCAGGTGTAGTTCAGTCTGGGCGGTTCTTGATGTTTAAAGAAAGATGTTTTTAtggtattatgtcatgttttgtgttgatcccaggaagagtagctgctgcttcagcaactgctaatggggatcctaataaaatcctAAATGCTAGGTGTGATATACTGACCATTATCATGGGAATTATGACACCTTCCAAGAGGTGAAGGCTGGGTTGGTTATTTCTTATAAAAGGCTGCCACCAACTCCAGTGTCTCGTAGCCCAGACTGACAGCAAGGTTTCCATTTGGAACCTTGAACCACTAAAATATAGACAACCAATTGATTATTGATTTATTTGCTGCGGAATAATTAGTGTTTTCTGAATCTGGAACAAAATATCAAAGATTTTCTCTTTTTGTTGGGGAAAAATGACTTTCTTCATCAACTTTGTGTTTTTGTCCACATTTTCTGCCGTGGCTTTGTCTCTTCCATTCCCTCACAACTCCATCAAGAGCGTTCCTAAGAATGGCGCGAGCCGGGACTTTGAATCATCCGGTAACGGTCCAGTCGACGAACAGGAGCCTATTCGGGGAACGGTCAAAGTAGTCAAACTCAACCCCAATAACCTGGGTCTGTCGGGTCTTTTTAGACGAGGCGGGATTTTCCCCCGGGGTGCGCCCGGTCCGAGGATGCCTTTCCCAGCCTTCTTGTCCATGGGTCGCCCTGGCCCTCTTGCGCTCCCTGACAAAGCAGCTGCGGTGCCTCTGCATCCACTGTCACATCTGCACCACGACAGTCAGGGCAATGGCGGGGTGGGTATGAAGAAGAGGCAAGGATTTGAGATGTGGCAGAGGGCCATGGATAAGAGCGACCACAGTAAGACCATGTCCATGTCGCTGCCCCTCAGTCTCAAAGACTCTGCCAACAGACAGAGCTGCGCCGCGGTGCCTTTTACTCAGCGGATAACGTCCGATGGCTGCGACGCGGTAACAGTCCACAACAAACTGTGCTTCGGTCAATGCAGTTCGCTGTTCATTCCCTCTGGTTGGGAGTCTGCCAGGCTGACGGGTGCAGGGGGACACCGCCGTGCGCCATGTTCCCGCTGCGCTCCATCCAAGGCTCACACGGTGACGGTGCCTCTGCGCTGTGGGATGGAGGTGCGGGAGAAGCGCGTGATGGTGGTGGAAGAATGCAAATGTGAAACTGGTCGTGAGGAGGGGAATATCGAGGCTGTGGCCTCCATGCACTTGTAACTGAAGATACTGTAGTTTAAGGGCGACATTTTCCAGGTGCAAAAGCTCTGTGCGAATTAGAAAACGCACACTGCGAAATTATAAGGAAGTTTATAGTATTTTTTGCACATTGCAACGCAACATTCTTGCACTACGACAATATCGCCCTAAATACTTGTTTCCCCCCTCACAGCACCTGCTCTAGCCTATTTTGATGACTCTAttcatcatttttggacagaaaatatttatattgTGATGTCAGATGTGGACATTGATTATGTGTATTGTATGTGTGAGTCTGAATTTCTAATTCAGAGAAAAACGATTTGGAGGCAAGTGCCACCAATGATTGTTGACAAGTGACTAACATTTTTAGTCATGAACATTTCTGTTCAACCCTGTGGCAGAATGAGTCATCCACTCCACAGTGTAATCATGTTGAATAACTTGTTTAGTTTCATCTGAACTGAACTGCATTTTGTTTTTgtgaaataaaaatgtcaatCTA

Function

NR:

description
DAN domain family member 5-like

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K01645 CER1; cerberus 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559193.2 True 2001 mRNA 0.46 2 13141743 13143937

Neighbor

gene id symbol gene type direction distance location
LOC110485647 LOC106589946 coding downstream 57861 12908759 ~ 13083882 (-)
LOC110485643 LOC106590024 coding downstream 237062 12900622 ~ 12904681 (-)
LOC110485520 LOC106590222 coding downstream 258436 12880948 ~ 12883307 (-)
LOC110485521 LOC106589832 coding downstream 263158 12871885 ~ 12878585 (-)
LOC110493438 LOC106564504 coding downstream 382016 12754186 ~ 12759727 (-)
LOC110516103 LOC106589920 coding upstream 138 13144075 ~ 13151846 (-)
LOC110485650 LOC106589714 coding upstream 10199 13154136 ~ 13161168 (-)
LOC110485655 rab3d coding upstream 19879 13163816 ~ 13178960 (-)
LOC110487513 LOC106589682 coding upstream 35658 13179595 ~ 13185984 (-)
LOC118938212 LOC106589906 coding upstream 66933 13210870 ~ 13262316 (-)
G1145035 NA non-coding downstream 16466 13124870 ~ 13126598 (-)
G1145019 NA non-coding downstream 88743 13050008 ~ 13053000 (-)
G1144987 NA non-coding downstream 208446 12932587 ~ 12933297 (-)
G1145051 NA non-coding upstream 17953 13161890 ~ 13162308 (-)
G1145064 NA non-coding upstream 43406 13187343 ~ 13187920 (-)
G1145069 NA non-coding upstream 45491 13189428 ~ 13213171 (-)
G1145063 NA non-coding upstream 51488 13195425 ~ 13196688 (-)
G1144338 NA other downstream 523585 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 526184 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 775458 12358008 ~ 12366285 (-)
G1143771 NA other downstream 1059861 12043108 ~ 12081882 (-)
G1145046 LOC106589870 other upstream 148998 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 213137 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 519243 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 659629 13798679 ~ 13812239 (-)

Expression


Co-expression Network