LOC110485683 (LOC106589359)


Basic Information

Item Value
gene id LOC110485683
gene name LOC106589359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13544642 ~ 13550664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940332.1
ATTatggctttttattttatttttgtgtgtatggCAACAGTATTAATAAAGGGTAAGCAAATGGACAGTTTTGGAAAAAAATGACCCTCCTCAAAGAAATGATGCTAAGAATGTTTCAGAGCCACAAAGACATGTCAGTGGTATGTATGGCATGGTAGTGCATATTCAAAATAGCTAAACACACCTTCAACTCAATAATAATTACAGGGTGACTCGGTGATAAGGTCATCATTAGTCATCGAGTAGGGTGATTAGGATGATAGTGAAAGGTGACAGGTCAACCCAGAAAATGTCTTTGCATGTTTTCTGATTCATCCTCAGTGACTTGATACGAAAAACTATTTGAGTTACATTTACAGTAAGGGTGAGCTGAGCCTGGAGAACTGTTTTCCTCAAGTTTAcctctctcagtgatgGGGTTCCTGACCTTCAAAGCCCAGTGATGCTAGCCATGAATCACTACAACCTCTCCGGGCCCCCGGGGGCCCTCGACCCCCTCTCCAACCTCAGCCAGTGGGACACGGAGATGGTGGAAATGGAGAGTCTGGCTCACCAGGGGAACCTCACCTCGGACAGGCCTATGTCCGGAGGCCCGATTGCAGCCGCTCTCTCCATGACCCTGGGCGTCATCTCCAACATCGTGGCCTTGTTCATCCTGGCCAACGCCTACTCCCACCAGCGCCGACGCTCCAAAGCCACCTTCCTCCTCTTTGCCAGCTCCCTGGTACTCACAGACTTTTTTGGGCACATCATCCCGGGAGCGCTGGTCCTCCGGCTTTACCTCTCTGGAGGGGTGTTCCCCGAGGCGGCCGCCGCTTCCTCAAACGGCTCGACCGACCCCATGTGCCAGTTCCTGGGGGGATCTATGGTGTTCTTTGGTCTGTGCCCGCTGTTCCTGGGCTGTGCGATGGCCGCCGAGCGCTGTCTGGGTGTCACGCAGCCACTGCTCCACTCCTCCTTAGTTACCACCACCCGTACCAAgctgtctctctctggtatctggcTGGTGGCCCTCTGCGTGGCCCTGCTGCCCTGTTTCCAGCTGGGGTCATACACCTACCAGCACCCCAACAGCTGGTGTTTTATCAAGGTCTTAGCGAACGACACCCAGGAAGCGGACGTAGCCTTTGTTACGCTCTTCTCCGGGCTGGGCCTGACGTCGCTGGGGGTGGCCCTGGTGTGTAACACCATCAGCGGGCTGACCCTGGTTCTGGCCAGGCTGAGACGGAGGCCATCGGGCTACTCATCGTCCCACAGCCACCGCTCAGTGGCAAAGAGCCATGATATAGAGATGGTGGTGCAGCTGGTGGGCATCATGGTCACGTCCTGTATCTGCTGGAGCCCTCTGCTGATCTTCGGGCTCATGTCGGTGATGCGCTCCTATAGGGGCTCCATTGATAAAGCTGACATGGCCACCTACGAGACGTTGAATTTGATGGGCGTGAGGCTGGCTTCCTGGAACCAGATCCTGGACCCCTGGGTCTATATACTGCTACGTCGGGCCGTCCTCCGCAAGATCTACCTCATCACCAAGCGCCAGGCCGATTTGAATGGGAGTGTGCTCCGACGCTGGGAGGGGAACTCGTTTCAGAGCAAGAGCTCGGAGAACAGTCCCGTTAACAGGATATGAGATCATAACCAAGCGCCAGGCCGATTTGAAGGGGAGTGTGCTGCTACGCTGGGAGTGGAACCCCTTTCAGAGTAAAAGCTTGGAGAAGAATACAGTCAACAGGATATGACTGTGTGACCGACGGTGTTCAAGTGAATGCCAGAAGAAGACTGCATTAGCCCGCTAAGCTAAAGCCTAGTATTGACCAGGGAGCCAAAGCAACTCTttaggtctcaggcaaggttactcatcatgCAGCGAGCGTGGTCCTTGGTACTTGTGGTGGTCACCGACAGAAAAAGAGGACATTTCTGTTATCCCGTATAGTGAAGGATACGATGCTCTGAAAAATGAGGATTACATGTTCTTCAGCCATGGCAGTATCTCTCAATCTTCTTTATCACAGTGACTGGCAAGCTAAGATCATCCTCCTTTGGATATCTCTTAAATTAAAACTAGGAATTAAGTACGGACATACCTGGTGTCCGAGAAACGGTCTTTTGGACCAGTCAGTCTGCATTATCCCACAGACCGAGAGTTGggaaacacaataccccacagaTGGAGAGTTGagaaacacaataccccacagaTGGAGAGTTGGGAAACACACTACCCCACAGACGGAGAGTTGGGAAACACACTACCCCACAGACGGAGAGTTGggaaacacaataccccacagaTGGAGAGTTGAGAAACACACTCGCATAGTGAGTAGGTCAAAGGCTTAAAGCTTATGAAGATGTGCAGCTATCTGAGAGATCAGAAGTTCAAAGCCTAGCTACATATCTTCATGAATAGAATGTAGCACAGAAGAATATCACAATTCATTCAACATATTGGATCTCATTTGTGGAACGTTACATTTGATTATTCTGAAGTCTGTTGGTTAAGGTTTAACAATTACATTTTAACATCATCGATGTCTAACGATTCCAGAACGACTCCAAAAAAAACGGAGTTGTATGCTATGTAAATGTTATGCCAAGATTGAGATTGCTTGTTAAGTAAAGGGAGAACTACGATTTTTTCCTGAGCTTCTGATGTATAAAAATGCTACTTCATGTCAAATATTGAACAAGTTATAAATATTTATTGCTTTTCCTCAATTCTCTGGGGACATGTAAAGAAGTTATGGAACGTAATTGAAGGTGATGAAATAAAGAAGATTGTTTTGACTGAATTAGATACCGT
>XM_021556796.2
CATTAGGACACTGCGCTATATAAAACGCTATTGAGAAGCACGCGTCAGAGAACCTGCGGTTCAGCCTATCCGCAGCGCTGGAATATTCCTCGCGCTCACTCTCCGGTCATGAAACTCCAATCAAACGGATTTAAAAGCGGTGAAGGCAATTCTGTTGGGAAGTTGTTGAACTTTTGTTTTCCGAGAACAGTGGGGAATATGAACTCAATGTCATCATCCTGCCGAAGAGATATCATGGAACAATGGTTCTTCTTTTAGAGTACTTTTATTCTGCCCCACTCGGTTTAGGAAGACTTTGGTGAATGTGTTTCGTTTTCAACGGTTTCTTTGGATTATATCTATCTGCAATCTGGATTTAGAAAAAACACCGCGGACTATTCCGTTGACAGGGTGGACATCACCATTGACTGGAATTATTCATCCCTATCTGTAATGcctctctcagtgatgGGGTTCCTGACCTTCAAAGCCCAGTGATGCTAGCCATGAATCACTACAACCTCTCCGGGCCCCCGGGGGCCCTCGACCCCCTCTCCAACCTCAGCCAGTGGGACACGGAGATGGTGGAAATGGAGAGTCTGGCTCACCAGGGGAACCTCACCTCGGACAGGCCTATGTCCGGAGGCCCGATTGCAGCCGCTCTCTCCATGACCCTGGGCGTCATCTCCAACATCGTGGCCTTGTTCATCCTGGCCAACGCCTACTCCCACCAGCGCCGACGCTCCAAAGCCACCTTCCTCCTCTTTGCCAGCTCCCTGGTACTCACAGACTTTTTTGGGCACATCATCCCGGGAGCGCTGGTCCTCCGGCTTTACCTCTCTGGAGGGGTGTTCCCCGAGGCGGCCGCCGCTTCCTCAAACGGCTCGACCGACCCCATGTGCCAGTTCCTGGGGGGATCTATGGTGTTCTTTGGTCTGTGCCCGCTGTTCCTGGGCTGTGCGATGGCCGCCGAGCGCTGTCTGGGTGTCACGCAGCCACTGCTCCACTCCTCCTTAGTTACCACCACCCGTACCAAgctgtctctctctggtatctggcTGGTGGCCCTCTGCGTGGCCCTGCTGCCCTGTTTCCAGCTGGGGTCATACACCTACCAGCACCCCAACAGCTGGTGTTTTATCAAGGTCTTAGCGAACGACACCCAGGAAGCGGACGTAGCCTTTGTTACGCTCTTCTCCGGGCTGGGCCTGACGTCGCTGGGGGTGGCCCTGGTGTGTAACACCATCAGCGGGCTGACCCTGGTTCTGGCCAGGCTGAGACGGAGGCCATCGGGCTACTCATCGTCCCACAGCCACCGCTCAGTGGCAAAGAGCCATGATATAGAGATGGTGGTGCAGCTGGTGGGCATCATGGTCACGTCCTGTATCTGCTGGAGCCCTCTGCTGATCTTCGGGCTCATGTCGGTGATGCGCTCCTATAGGGGCTCCATTGATAAAGCTGACATGGCCACCTACGAGACGTTGAATTTGATGGGCGTGAGGCTGGCTTCCTGGAACCAGATCCTGGACCCCTGGGTCTATATACTGCTACGTCGGGCCGTCCTCCGCAAGATCTACCTCATCACCAAGCGCCAGGCCGATTTGAATGGGAGTGTGCTCCGACGCTGGGAGGGGAACTCGTTTCAGAGCAAGAGCTCGGAGAACAGTCCCGTTAACAGGATATGAGATCATAACCAAGCGCCAGGCCGATTTGAAGGGGAGTGTGCTGCTACGCTGGGAGTGGAACCCCTTTCAGAGTAAAAGCTTGGAGAAGAATACAGTCAACAGGATATGACTGTGTGACCGACGGTGTTCAAGTGAATGCCAGAAGAAGACTGCATTAGCCCGCTAAGCTAAAGCCTAGTATTGACCAGGGAGCCAAAGCAACTCTttaggtctcaggcaaggttactcatcatgCAGCGAGCGTGGTCCTTGGTACTTGTGGTGGTCACCGACAGAAAAAGAGGACATTTCTGTTATCCCGTATAGTGAAGGATACGATGCTCTGAAAAATGAGGATTACATGTTCTTCAGCCATGGCAGTATCTCTCAATCTTCTTTATCACAGTGACTGGCAAGCTAAGATCATCCTCCTTTGGATATCTCTTAAATTAAAACTAGGAATTAAGTACGGACATACCTGGTGTCCGAGAAACGGTCTTTTGGACCAGTCAGTCTGCATTATCCCACAGACCGAGAGTTGggaaacacaataccccacagaTGGAGAGTTGagaaacacaataccccacagaTGGAGAGTTGGGAAACACACTACCCCACAGACGGAGAGTTGGGAAACACACTACCCCACAGACGGAGAGTTGggaaacacaataccccacagaTGGAGAGTTGAGAAACACACTCGCATAGTGAGTAGGTCAAAGGCTTAAAGCTTATGAAGATGTGCAGCTATCTGAGAGATCAGAAGTTCAAAGCCTAGCTACATATCTTCATGAATAGAATGTAGCACAGAAGAATATCACAATTCATTCAACATATTGGATCTCATTTGTGGAACGTTACATTTGATTATTCTGAAGTCTGTTGGTTAAGGTTTAACAATTACATTTTAACATCATCGATGTCTAACGATTCCAGAACGACTCCAAAAAAAACGGAGTTGTATGCTATGTAAATGTTATGCCAAGATTGAGATTGCTTGTTAAGTAAAGGGAGAACTACGATTTTTTCCTGAGCTTCTGATGTATAAAAATGCTACTTCATGTCAAATATTGAACAAGTTATAAATATTTATTGCTTTTCCTCAATTCTCTGGGGACATGTAAAGAAGTTATGGAACGTAATTGAAGGTGATGAAATAAAGAAGATTGTTTTGACTGAATTAGATACCGT

Function

NR:

description
prostaglandin E2 receptor EP1 subtype-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function
GO:0004960 thromboxane receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940332.1 False 2806 mRNA 0.49 5 13544642 13550192
XM_021556796.2 True 2840 mRNA 0.50 5 13544642 13550664

Neighbor

gene id symbol gene type direction distance location
LOC110485687 LOC106564530 coding downstream 2574 13525979 ~ 13542068 (-)
LOC110485686 LOC106589400 coding downstream 19942 13519344 ~ 13524700 (-)
LOC118938214 NA coding downstream 34727 13505725 ~ 13509915 (-)
LOC110485677 LOC106564572 coding downstream 50270 13471224 ~ 13494372 (-)
LOC110485679 LOC106564573 coding downstream 73661 13462989 ~ 13470981 (-)
LOC110485698 LOC106564568 coding upstream 50064 13600728 ~ 13614083 (-)
LOC100136256 LOC100136256 coding upstream 69110 13619768 ~ 13652557 (-)
LOC110485696 LOC106564559 coding upstream 106789 13657453 ~ 13665295 (-)
LOC110485695 LOC106564561 coding upstream 115138 13665802 ~ 13672084 (-)
LOC110485694 LOC106564562 coding upstream 123986 13674650 ~ 13681639 (-)
G1145209 NA non-coding downstream 26910 13517440 ~ 13517732 (-)
G1145203 NA non-coding downstream 43982 13499483 ~ 13500660 (-)
G1145196 NA non-coding downstream 83182 13461254 ~ 13461460 (-)
LOC110485678 LOC106589534 non-coding downstream 102604 13439698 ~ 13458698 (-)
G1145234 NA non-coding upstream 5405 13556069 ~ 13556290 (-)
G1145292 NA non-coding upstream 109894 13660558 ~ 13661218 (-)
G1145224 NA non-coding upstream 138464 13689128 ~ 13700548 (-)
G1145301 NA non-coding upstream 156563 13707227 ~ 13707457 (-)
G1145110 LOC106589620 other downstream 183834 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 250499 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 373485 13163816 ~ 13178960 (-)
G1145035 NA other downstream 418044 13124870 ~ 13126598 (-)
G1144338 NA other downstream 926484 12617959 ~ 12618158 (-)
LOC110485704 NA other upstream 252902 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 536288 14086952 ~ 14087567 (-)
G1145790 NA other upstream 538994 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 626583 14177247 ~ 14180330 (-)

Expression


Co-expression Network