LOC100136256 (LOC100136256)


Basic Information

Item Value
gene id LOC100136256
gene name LOC100136256
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13619768 ~ 13652557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556140.2
TATAAATTGCCTGTATCGCATGAACACTGGTAGGACACGAGTTTAAACCAGCGTGAAAACAACTAACATTCCAGTTCGCAAAGAAATATCAACGGGACGAAAGACTGTGTGGAATCCAATAATTTGTCACCGGACATCAGTTTGAATACAACGTTCAAGAAAAAAAACCCGACGACTATTGACTCGGCGCTGCCCTGCACGACTACAAGCTCCTCAAGCAGAACATGAACTTGAACTTCGCCGAGAACTATCGGAACCAAAGCCTCAAGGCTCAGCTGCGCAACGAGAGTGAATTCTATCCGACCGGGGGCGCATCAGAAGTCGGCTCGCTGAAGCTCGCCTCTCCTGAACTGGAGCGATTGATCATCCAGAACAGCAACGGTGTCATCACTACCACACCGACACCTGGGCAGTACTTCTACAGTAGGGGAATCACAGAGGAACAAGAGGGCTTCGCGGACGGGTTCGTTAAAGCTCTGGACGACCTCCACAAGATGAACCAGATGCCGCCACCGAACGTGTCCATCGGAACCGGTGGAGTCTCCACGTGCACTGTGGCCTCCACCGTGTTTGGTTCCTCCATGCAGCCGGAGCACCTGGAGTACACCACCCTGAACAGCTGTGGCCCTCACACTAACCTCACACCTGCAACCAGCAGCTACCCCTCCACCACCATCAGCTACCTGCCTCACCACCAGTACCAGCACCACCAAGCCGCGGCGCACCCATCCCACCACTTCCAGCACCCTCTATCCGGAGCAGGCATACACGCACAGCGATATTCGGGGCTGAAAGAGGAGCCCCAGACCGTTCCAGACATGCAGAGCAGCGACGACGAGTCAGTTTGCGGCTTGTCCCCAATCGACATGGAGAACCAGGAGCGCATCAAGGCCGAGCGCAAGAGGCTAAGGAACCGCCTGGCAGCCACCAAGTGCCGGAAGCGCAAGCTGGAGCGCATCTCGCGCTTGGAGGACAAGGTGAAGATTCTGAAGACAGACAACGCCGGGCTCTCCAGCACAGCTTCCGTCCTGCGCGAGCAGGTAGCTCAACTCAAACAGAAAGTTATGACACACGTCAGTTCTGGCTGTCAACTCATGTTGACATCCAAGATCAAGTCGTTTTGAAAACTATAAAACGATGGACTATAAAATAAACACTGGACAATAATAGGGAATACATTTGTTTTCCTTTGTTAAAGCAAATCAGAACTTACTGCACTGTTGGGACAGCAATTGAGTGAACTACCATTTGTGTTTTCATGTTGAAAATATTCAAAAGTTGGTTATGTTTTTTGCATTGTCTATTGGTTTCCAGGGTATGATGGACATGGGGAACCGCGTGCACAATATTAAGACTAATAACACTCGGGGCATTCTGAACAAGTTATATACAGTGTCCTCCAGTAATGACTTTGCCtgtttacatttgttttttattcatttgAACTGTCATTTGTGAAATGCATTCCATTTATAAGTTATTGTTTTACGTCAGGTTGATCCTCACTGTCTTTTTTActtgtacagtatatatttaagTAAAATCTTAACATTTAC
>NM_001124520.1
CGAGTTTAAACCAGCGTGAAAACAACTAACATTCCAGTTCGCAAAGAAATATCAACGGGACGAAAGACTGTGTGGAATCCAATAATTTGTCACCGGACATCAGTTTGAATACAACGTTCAAGAAAAAAAACCCGACGACTATTGACTCGGTACAGTACAGTTCCACTATTTTGGAAGTTTTGCTCTGTTCTACATTGATAACTTTGGGCTTGATTATAATATACCTTCTGCGGAAACGTTTGGTTGCTGAAAAGACACTCGAGAGGGCTTGCCcttttttggacttataaattcaGCTACTACACTGAAGAATTCCAGCAATATTTGAATAATGTCCACAATAATGGAACAGCCTTTCTATCATGACGACTCGTTTCTTTCTGCTTATGGTCATTCAGGCGCTGCCCTGCACGACTACAAGCTCCTCAAGCAGAACATGAACTTGAACTTCGCCGAGAACTATCGGAACCAAAGCCTCAAGGCTCAGCTGCGCAACGAGAGTGAATTCTATCCGACCGGGGGCGCATCAGAAGTCGGCTCGCTGAAGCTCGCCTCTCCTGAACTGGAGCGATTGATCATCCAGAACAGCAACGGTGTCATCACTACCACACCGACACCTGGGCAGTACTTCTACAGTAGGGGAATCACAGAGGAACAAGAGGGCTTCGCGGACGGGTTCGTTAAAGCTCTGGACGACCTCCACAAGATGAACCAGATGCCGCCACCGAACGTGTCCATCGGAACCGGTGGAGTCTCCACGTGCACTGTGGCCTCCACCGTGTTTGGTTCCTCCATGCAGCCGGAGCACCTGGAGTACACCACCCTGAACAGCTGTGGCCCTCACACTAACCTCACACCTGCAACCAGCAGCTACCCCTCCACCACCATCAGCTACCTGCCTCACCACCAGTACCAGCACCACCAAGCCGCGGCGCACCCATCCCACCACTTCCAGCACCCTCTATCCGGAGCAGGCATACACGCACAGCGATATTCGGGGCTGAAAGAGGAGCCCCAGACCGTTCCAGACATGCAGAGCAGCGACGACGAGTCAGTTTGCGGCTTGTCCCCAATCGACATGGAGAACCAGGAGCGCATCAAGGCCGAGCGCAAGAGGCTAAGGAACCGCCTGGCAGCCACCAAGTGCCGGAAGCGCAAGCTGGAGCGCATCTCGCGCTTGGAGGACAAGGTGAAGATTCTGAAGACAGACAACGCCGGGCTCTCCAGCACAGCTTCCGTCCTGCGCGAGCAGGTAGCTCAACTCAAACAGAAAGTTATGACACACGTCAGTTCTGGCTGTCAACTCATGTTGACATCCAAGATCAAGTCGTTTTGAAAACTATAAAACGATGGACTATAAAATAAACACTGGACAATAATAGGGAATACATTTGTTTTCCTTTGTTAAAGCAAATCAGAACTTACTGCACTGTTGGGACAGCAATTGAGTGAACTACCATTTGTGTTTTCATGTTGAAAATATTCAAAAGTTGGTTATGTTTTTTGCATTGTCTATTGGTTTCCAGGGTATGATGGACATGGGGAACCGCGTGCACAATATTAAGACTAATAACACTCGGGGCATTCTGAACAAGTTATATACAGTGTCCTCCAGTAATGACTTTGCCtgtttacatttgttttttattcatttgAACTGTCATTTGTGAAATGCATTCCATTTATAAGTTATTGTTTTACGTCAGGTTGATCCTCACTGTCTTTTTTActtgtacagtatatatttaagTAAAATCTTA
>TU1306245
GTTTTATCAGGTGTCCCTTTGTCAGTTGATTTTGATATTGCTGCTCTGGTTTACGGTAAAATGAGCAGTGCTGTGAGCTGACACTAGAGGGCAAAGTTGAACTAATAATAATATTCACTATTTTTATCGTGCTTTTCAATTCAAGTAACAAAGTGCTTCATATCATAAAATTATCAAATAAAAGTACTAACAAAGAAACAAAGACAGGAGGAAGTAACATTTGAAAGATATCTAATTCAAGTCATAGATAGCTAATCAAAAGATGTCTCATTAATATCATACAAATAATACTAACTTTAACTAGGATACCGTACTTCAATAACAGGTACAGTGAGTGATACTGTACTTCAGTCAAGACTGAACCTATCCTCAAACACTCATACTACTGTACAAACAGTGGCAAAATATGATCCACCATTTTGAGTAATGCCAGCGTACTCCACTTGTATTCCACTTGTGTCGTGAGACAGTCAAATGTAAAAGAGCATAAGAGATTGGTATGATGGACATGGGGAACCGCGTGCACAATATTAAGACTAATAACACTCGGGGCATTCTGAACAAGTTATATACAGTGTCCTCCAGTAATGACTTTGCCtgtttacatttgttttttattcatttgAACTGTCATTTGTGAAATGCATTCCATTTATAAGTTATTGTTTTACGTCAGGTTGATCCTCACTGTCTTTTTTActtgtacagtatatatttaagTAAAATCTTAACATTTACCCTCGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060047 heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556140.2 False 1556 mRNA 0.49 2 13619774 13621578
NM_001124520.1 False 1760 mRNA 0.47 1 13619782 13621541
TU1306245 True 744 lncRNA 0.34 2 13619768 13652557

Neighbor

gene id symbol gene type direction distance location
LOC110485698 LOC106564568 coding downstream 5691 13600728 ~ 13614083 (-)
LOC110485683 LOC106589359 coding downstream 69110 13544642 ~ 13550664 (-)
LOC110485687 LOC106564530 coding downstream 77706 13525979 ~ 13542068 (-)
LOC110485686 LOC106589400 coding downstream 95074 13519344 ~ 13524700 (-)
LOC118938214 NA coding downstream 109859 13505725 ~ 13509915 (-)
LOC110485696 LOC106564559 coding upstream 35875 13657453 ~ 13665295 (-)
LOC110485695 LOC106564561 coding upstream 44224 13665802 ~ 13672084 (-)
LOC110485694 LOC106564562 coding upstream 53072 13674650 ~ 13681639 (-)
LOC110485693 LOC106589449 coding upstream 68185 13689763 ~ 13698310 (-)
c13h22orf23 cssa12h22orf23 coding upstream 101243 13722821 ~ 13726634 (-)
G1145234 NA non-coding downstream 63484 13556069 ~ 13556290 (-)
G1145209 NA non-coding downstream 102042 13517440 ~ 13517732 (-)
G1145203 NA non-coding downstream 119114 13499483 ~ 13500660 (-)
LOC110485677 LOC106564572 non-coding downstream 147873 13471224 ~ 13494372 (-)
G1145196 NA non-coding downstream 158314 13461254 ~ 13461460 (-)
G1145292 NA non-coding upstream 38980 13660558 ~ 13661218 (-)
G1145224 NA non-coding upstream 67550 13689128 ~ 13700548 (-)
G1145301 NA non-coding upstream 85649 13707227 ~ 13707457 (-)
G1145303 NA non-coding upstream 89045 13710623 ~ 13710888 (-)
G1145305 NA non-coding upstream 89627 13711205 ~ 13711453 (-)
G1145110 LOC106589620 other downstream 258966 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 325631 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 448617 13163816 ~ 13178960 (-)
G1145035 NA other downstream 493176 13124870 ~ 13126598 (-)
G1144338 NA other downstream 1001616 12617959 ~ 12618158 (-)
LOC110485704 NA other upstream 181988 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 465374 14086952 ~ 14087567 (-)
G1145790 NA other upstream 468080 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 555669 14177247 ~ 14180330 (-)

Expression


Co-expression Network