LOC110485696 (LOC106564559)


Basic Information

Item Value
gene id LOC110485696
gene name LOC106564559
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13657453 ~ 13665295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556817.2
TAGCTCTCGGCAGGCTGTCGCTTGTGGTCCATCACCGATTTAAAATGCACTGTGCAGAAAAGCTCGCTCTCCCAGTAGGGGACATACACTAACGAGCTTCGTCTCCTCCAATTTTCGGGATTTGCCCCGGGGCGCTCGAACCACAGAACGCACTGCTGAGGCTCCAGCATCCAAGGATTACCCTCTACTGCTGCCTTCTTTTACTGTATGATGTATCGGCTGAATGGGTTACCAACGGTGGACGTAGAATGATTAACTGATAGACGACATCATGACGGTCACCTACACCGCGCAAGTTGCCAATGCGCGCTTCTGCGGGTTCTCCAAACTGCTCCTAGCCTGGAGGGGAAGCATCTACAAGGTCTTATGGAAGGAGTTCCTTGCTTTCTTCGCCATGTACACTGCCATCAGTGTCACATACAGATTCTTCCTCTTTGATGACCAGAAGAGGTATTTTGAAAAACTGGCAATTTACTGCAACCACTATGCCAGTCTCATCCCCATGTCTTTTGTGCTAGGTTTTTACGTGACACTGGTGGTGAACCGCTGGTGGAATCAGTACACCCGCATTCCATTACCTGACCGCCTGATGTGCGTGCTCTCCGGCGGCCTGCAGGGTGTGGACGAGCGCGGGCGGCTGCTGCGACGCACCATGATGCGCTATGCAAGTCTGTCCGCGTTACTGATTTTGCGCTCGGTCAGCACCGCGGTGTTCAAACGCTTCCCGACCATGGACCACGTCGTGGAAGCAGGGTTCATGACCAGGGAGGAGCGGAAGAAGTTTGAGAGCCTCAAGTCCCCCTATAACAAGTACTGGATTCCCTGTGTGTGGTTCACTAACCTGGCCGCCCTGGCCCGCTGTGAGGGCAGGATTAAGGACGACAGCACCCTCAAACTAGTGCTGGAGGAGCTCAATCATTTCAGAGGGAACTGCAGTATGCTTTTCCATTACGACATGATCAGTGTTCCCCTGGTCTACActcagGTGGTGACTCTGGCCGTGTACAGTTTTTTCTTCGTGTGTCTGATAGGACGTCAGTTCCTGGACCCCACACAGGGCTACCTGGGTCATGACCTGGACCTGTACGTCCCCATCTTCACTCTGCTACAGTTCTTTTTCTACGCTGGCTGGCTCAAGGTAGCAGAGCAGTTGATAAACCCATTTGGAGAGGACGATGATGACTTTGAGACCAACTGGCTGATAGACAGGAACTTCCAGGTCTCCATGATGGCAGTCGATGAGATGTATGGGGATCTTCCCATCATGGAAAGAGACCGATATTGGAACGACTCTAACCCTCGTCCTCCCTACACTGCAGCAACTCTATTCGGGCTGCGCAAACCCTCCTTCCAGGGCTCCACATTCGACATGGCGATTCCCAAAGAGGAGATGCACTTCGCTCCCCTGGCAGATATCACTGAGAATGTGGAGTCTCAGGGTGGGGGCCACCACCCCAACATGGCCCTGTTCAACCGGCTCCTCTTCACTGCCCCGTCCCCCACGGGACTCATTGGAGGGGCGCTGCGCCGCACCTCCGCCCAGCTCCAAAGGTTCCGCCGTCGCTCCGGGATGTACCCGCCCTCGTTCAGTGATGAAGAGGGTGAGGACGAGGATGACGAAGGTGGGAAGACTTTGGGGCCGTCTGGGGGCTCGCTGCCGTCTGTTTTAGCTCAGGATACTCAGAGTACCATATGTAGTTGTGGAGGGGTGTTTAATGCTAGGACACCCCTCATGGAGGTACAGTTTGGGGTTGGGGTGGAGAGATGTGGGGACGCCCTTCAAAGCCAGGAAGAGATtatggaagaagaggaagaagaaaaggATGAGGGGAACACCCAGAAGGGGGCAGAGAAAGAAAAGATGGAGGAAGGGAACACTGAGGTGACAGGAGATATTCAAAGCCGCATGCCACTGCTCCCATCACCCCTCCAGCCTTCCAGAGACCGAGGCCAAACATCCATCAGACAACCCCAGAATAAGACACCCAGACCAGCCTCGACAACCCCCTCCAGCCCCCTAGCCCCCAGAATCATCCACCCCCGTTCCACAGCCTGCTCCACCCAAGACCTTTTCATCTCTGAACCAATCACAGAGCAGAGCACAGTGATCCCCGCCATTCCCAAGCCGCCCATTGGTGGAGCCAAGATGTCTTTCCTCACTGTGCCGTCCTACAGCGCCCCACAGCGTCATAGGAGCGTCAGCATGGGGTCAGAGTCCCCATCGGCTCCGAAACGAGAAACTGCACCCTGTTCTAgccaaaattagtgcactacttagggaataggatgccatttcagaaCCGGACTATGAGTAAGGGAGAACATACATACTTCTGTCCAACtgggaccaa
>TU1306332
AACAAAACTAACACAATATATGTTTtccgagatatatatatatatttttaatatgaTAGATTAACTGATAGACGACATCATGACGGTCACCTACACCGCGCAAGTTGCCAATGCGCGCTTCTGCGGGTTCTCCAAACTGCTCCTAGCCTGGAGGGGAAGCATCTACAAGGTCTTATGGAAGGAGTTCCTTGCTTTCTTCGCCATGTACACTGCCATCAGTGTCACATACAGATTCTTCCTCTTTGATGACCAGAAGAGGTATTTTGAAAAACTGGCAATTTACTGCAACCACTATGCCAGTCTCATCCCCATGTCTTTTGTGCTAGG

Function

NR:

description
PREDICTED: bestrophin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556817.2 False 2351 mRNA 0.54 10 13657453 13665295
TU1306332 True 327 TUCP 0.43 2 13663180 13663620

Neighbor

gene id symbol gene type direction distance location
LOC100136256 LOC100136256 coding downstream 35875 13619768 ~ 13652557 (-)
LOC110485698 LOC106564568 coding downstream 43370 13600728 ~ 13614083 (-)
LOC110485683 LOC106589359 coding downstream 106789 13544642 ~ 13550664 (-)
LOC110485687 LOC106564530 coding downstream 115385 13525979 ~ 13542068 (-)
LOC110485686 LOC106589400 coding downstream 132753 13519344 ~ 13524700 (-)
LOC110485695 LOC106564561 coding upstream 507 13665802 ~ 13672084 (-)
LOC110485694 LOC106564562 coding upstream 9355 13674650 ~ 13681639 (-)
LOC110485693 LOC106589449 coding upstream 24468 13689763 ~ 13698310 (-)
c13h22orf23 cssa12h22orf23 coding upstream 57526 13722821 ~ 13726634 (-)
LOC110485690 sox10 coding upstream 63217 13728512 ~ 13733700 (-)
G1145234 NA non-coding downstream 101163 13556069 ~ 13556290 (-)
G1145209 NA non-coding downstream 139721 13517440 ~ 13517732 (-)
G1145203 NA non-coding downstream 156793 13499483 ~ 13500660 (-)
LOC110485677 LOC106564572 non-coding downstream 185552 13471224 ~ 13494372 (-)
G1145224 NA non-coding upstream 23833 13689128 ~ 13700548 (-)
G1145301 NA non-coding upstream 41932 13707227 ~ 13707457 (-)
G1145303 NA non-coding upstream 45328 13710623 ~ 13710888 (-)
G1145305 NA non-coding upstream 45910 13711205 ~ 13711453 (-)
G1145306 NA non-coding upstream 46447 13711742 ~ 13711976 (-)
G1145110 LOC106589620 other downstream 296645 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 363310 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 486296 13163816 ~ 13178960 (-)
G1145035 NA other downstream 530855 13124870 ~ 13126598 (-)
G1144338 NA other downstream 1039295 12617959 ~ 12618158 (-)
LOC110485704 NA other upstream 138271 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 421657 14086952 ~ 14087567 (-)
G1145790 NA other upstream 424363 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 511952 14177247 ~ 14180330 (-)
G1146251 NA other upstream 1045287 14710582 ~ 14711954 (-)
G1145292 NA non-coding downstream 1962 13660558 ~ 13661218 (-)

Expression


Co-expression Network