LOC110485690 (sox10)


Basic Information

Item Value
gene id LOC110485690
gene name sox10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13728512 ~ 13733700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556808.2
tttctctctttccttctcacaACGGCGCTCTTTAAGCTCCGGTGCGCGATACAGAGCGGCCATTCATTGAAGGGCAAACCAAACGAGGGGGCAGGGGACAGGGCGAGCGTCACACTGGTGGACAGGGGAACGCACGAACTCCCGTGTTGAACGGGCGACCTCCTAAACTCTGCATTGgcGACATCGGTGGAAGTGAATGGGAAGTGCAAAGGACAGGATTTGGGTACATTCGATTACGCACGAGTAGGCTATGGGTTTACGCGTGGCATATAGGAATAATTCCACATAAAGGAGCGAGTCCGGAGCACATCTCTCAGCTGTAGCTTAAAGTTTTGCATTCTCTGAACAAATTTAACAAATTTTCCTGCAAGGATATTTTTTGTTGCCAATCGATAATAGGCCATACATTAAAATGTCTGGAGAGGAGCACAGTCTATCCGAGGCAGAGTTGAGTCCCGGGGGCTCAGATGATGGTCACTCTCTGTCACCGGCACACTCCGGGGCCAACGGCGGCCGGGACTCCCCGCTCATCGGTCCGTCGCAGCAACTGACTGGGCTTTCTGGCGCAGATGGCGGCGGAGAGGACGGTGGACTAGTACCCAAGTCAGAGGTGGATATGGACCGGTTCCCCATCGGCATCCGCGAGGCGGTCAGCCAGGTGCTGGACGGATACGACTGGACGCTCGTGCCAATGCCCGTGCGCGTAAACAACGGGAACAAGAGCAAGCCGCACGTGAAGAGGCCGATGAACGCCTTCATGGTGTGGGCGCAGGCCGCGCGCCGTAAACTGGCGGACCAGTACCCTCACCTGCACAACGCGGAGCTCAGCAAGACACTCGGCAAACTGTGGAGGCTCCTGAATGAGAGTGACAAGAGGCCTTTCATTGAGGAGGCGGAGCGACTGCGGAAACAACATAAGAAGGACTACCCAGAGTACAAGTACCAGCCCCGCAGACGCAAGAACGGCAAGCTGGGGACCAAtggtgagggaggggagggagcagagggggaggGCAGCCACGCCCAGTCCCATTACAAGGCCCTCCACCTGGATGTGCACAGTACAGGGGCTGGGTCCCCCCTGGCCGacctccaccaccatcatcaccaccaccctgCAGGTCAGGGTCACAGCCCGCCAACACCCCCCACCACCCCAAAGACAGAGCTCCAGTCTGGAAAGATGacggaggggaagagggagggcgGAGGTGGCTCAGGGTCCTCCCGTGGAGGAGGCCTGGGGGTAGGAGCAGAGGGGGCCTCTGGGGGCCATTCATCAGCGGGCGGGAAAccccacatcgacttctgcaccaTGGACATCGGCGAGATCAGCCACGACGTGATGGCCAACATCGAGCCCTTCGACGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGGCACCCGGGGGTCGGCCAGGGCGGCGCCGCCACATCAAGCTCCTCCGCTACATCCTACGCCTATGCCCTTGCTGCTGCCAGCGGCCACTCAGCCGCCTGGCTCTCCAAGCAGCATCAGCATCAACAGCCCTCCCCCTCAGCCTCAGACGCCACCAAGGCCCAGATCAAGAGTGAGTCTGGGGCCGGGAGCCACTACGcagagtcttcctcctcttcgtctggaACCCACGTCACCTACACCCCCCTCAGCCTCCCCCACTACGGATCAGCCTTCCCCTCGCTGCCATCCAGGGCCCAGTTTGAGTACGGGGAGCACCAGGCTCCGGGGCCGTACTACGCCCACTCCAGCCAGGCCCCAGGGCTGTACTCAGCCTTCTCCTACAtggggcccagccagaggcccctctacactaccatcaCTGATCCCTCCAGCGTGGCCCAGTCTCACAGTCCTACACATTGGGAGCAGCCTGTCTATACCACCCTGTCACGGCCATGAGAGACTGAGATGCATGGGatcggatgtgtgtgtgtgtgcgtctctacACCACCTTCTCACGACCCTGAGAAAGGGATAAAGAAAGACAAAGATTGGAAGAGTGGCTActgaataaatgtgtgtgtgtgtgtgtggcgggttAACAAAGGATGGATATCTTACTGATGTTGTATTGGGATTCATTGGGACTTGACAGTATCTCTATCCATGGAGTCCTTATAATcttttactgtacagtatattttcTATCACAGCCAATGGTCAATAGCCAATCAGAATAAACCTTTAACCAATGTGTGCCATGTTTTAGTGTGTAAGGTCAGGATCCCAGCTGCCAGAGTGTCATAGTGTATAGTAAGAGGGCTTATTGTGATGATGAGCCCAGAGCACACAGAACTAATACCGTAGTGGTAAGAAGGATACACACAGGGTCTCAAAATGCTGCTAACTTCCCCCAAATTCCccggttttccagaaatcctatTTGGAAGTTCCTGGAattaggagggaataagcaggataTCCAGGAATCCTCTtactgggatttctggaaaaccagggaatttggggaaagttaatGGAATTTTTCCAACCCTAGCTACCTATATAACCAGGATTGAGTAACATTGCCAGCAAGGACTGGCTTTCAGCGGGTTTCGACAGGCTATCAGCCTAGGAAAAATACAACATGATGTTTATCAGAACTGGGTTGTTTTAGATTGAAATAATCTGAGTCTATTAACCAAACTAAAGGAAATGTTTGTGTGACTTCattttagtatttttttatgACTTAAGTGATGTATTTGTTGGTTATTTTTTATATGACTTTACATTCTGGTTCGATATTACACTGGCATATCTTCACCACTGCTTTTGAAAGAAAGGTCAGTTTACCGGGTCAAAAACGTTATGCGTTGGTCTacgggcgtcaggtagcctagccgTTAAGTGCAttaggccagtaactgaaagctTGCCTGTTCGAAACCCTGAGCCGGCGCGGTGGAAAAATCTTctattctgcccttgagcaaggcagttcacCTGCAACAACTACTCCCCGGGCGCCATGGacgtcaattaaggcagcccccacTGCACATCTCTGATTCAAAGGGTTTCTGTTAGATGTGGAAGACACGGTTGAATGCGTTCAgtttgtgcaactgactaggtatcacctTCTGGGATGCTGCTTGACTCCTTATGTGTTGCGTTGTGCAAAACCAGAGTTGACGAGGAAAAAGGACAAAaaaaaggagggaaagagaattcCTGGAAACACTTTAGCATAGAGTTCTGGAAAGCAGCACATTACCTCAACTCAATGTACATGTGCCAATAACACTCTACATGCTCTAATATCCTCGATGAGAATATATGGCACACATTTCGCTTATAAATAATAAAACAGTTGTTGGAGtcactggatttttttttttttttattgatatgGATTGCATTTGTACGCTCTGGTTGCTTCTAATTCCATTTGTCTACCAAATTATCAAAGCAAAACAATCTACAAGACTCAGCAAGTACAAAGTCGGCAAAATCTTTTTGTGAAGAATTCTCCAGCTTTAAACTAAAGATTTACTCTTAGTGAGAATTAGTGAGCTGTTTAGAACAAATGCCACATGCTATAGTTTATGTACATAGGTTTCCCCTCTGCATCTCCCTTTTCTGTATCCTGTTTAAATGTCCCTCTCGGCTCCCTCTGCAATGTGAATGATCACCACATGCCTCTTCTTCCATAGGTGACTTAGACGGGAGTCATTTTATACTGACCCTCTCTGCTTTGTagtttttataaaaaataatttcACGTTTagctttttctctctccattttgTACATTTCTGGATAGTTTCTAAAACGTTGTAAGCTACACATTTGATGTATCTGCTTTCTTCTACAAGAAACAACAATGTACAAATATTATTGATGTTGTCATTACGTCGTCATTCTATTAAAGCAATTTATTTATACAAAA
>XM_036940339.1
tttctctctttccttctcacaACGGCGCTCTTTAAGCTCCGGTGCGCGATACAGAGCGGCCATTCATTGAAGGGCAAACCAAACGAGGGGGCAGGGGACAGGGCGAGCGTCACACTGGTGGACAGGGGAACGCACGAACTCCCGTGTTGAACGGGCGACCTCCTAAACTCTGCATTGATGGCGGCGGAGAGGACGGTGGACTAGTACCCAAGTCAGAGGTGGATATGGACCGGTTCCCCATCGGCATCCGCGAGGCGGTCAGCCAGGTGCTGGACGGATACGACTGGACGCTCGTGCCAATGCCCGTGCGCGTAAACAACGGGAACAAGAGCAAGCCGCACGTGAAGAGGCCGATGAACGCCTTCATGGTGTGGGCGCAGGCCGCGCGCCGTAAACTGGCGGACCAGTACCCTCACCTGCACAACGCGGAGCTCAGCAAGACACTCGGCAAACTGTGGAGGCTCCTGAATGAGAGTGACAAGAGGCCTTTCATTGAGGAGGCGGAGCGACTGCGGAAACAACATAAGAAGGACTACCCAGAGTACAAGTACCAGCCCCGCAGACGCAAGAACGGCAAGCTGGGGACCAAtggtgagggaggggagggagcagagggggaggGCAGCCACGCCCAGTCCCATTACAAGGCCCTCCACCTGGATGTGCACAGTACAGGGGCTGGGTCCCCCCTGGCCGacctccaccaccatcatcaccaccaccctgCAGGTCAGGGTCACAGCCCGCCAACACCCCCCACCACCCCAAAGACAGAGCTCCAGTCTGGAAAGATGacggaggggaagagggagggcgGAGGTGGCTCAGGGTCCTCCCGTGGAGGAGGCCTGGGGGTAGGAGCAGAGGGGGCCTCTGGGGGCCATTCATCAGCGGGCGGGAAAccccacatcgacttctgcaccaTGGACATCGGCGAGATCAGCCACGACGTGATGGCCAACATCGAGCCCTTCGACGTCAACGAGTTTGACCAGTACCTGCCGCCCAACGGGCACCCGGGGGTCGGCCAGGGCGGCGCCGCCACATCAAGCTCCTCCGCTACATCCTACGCCTATGCCCTTGCTGCTGCCAGCGGCCACTCAGCCGCCTGGCTCTCCAAGCAGCATCAGCATCAACAGCCCTCCCCCTCAGCCTCAGACGCCACCAAGGCCCAGATCAAGAGTGAGTCTGGGGCCGGGAGCCACTACGcagagtcttcctcctcttcgtctggaACCCACGTCACCTACACCCCCCTCAGCCTCCCCCACTACGGATCAGCCTTCCCCTCGCTGCCATCCAGGGCCCAGTTTGAGTACGGGGAGCACCAGGCTCCGGGGCCGTACTACGCCCACTCCAGCCAGGCCCCAGGGCTGTACTCAGCCTTCTCCTACAtggggcccagccagaggcccctctacactaccatcaCTGATCCCTCCAGCGTGGCCCAGTCTCACAGTCCTACACATTGGGAGCAGCCTGTCTATACCACCCTGTCACGGCCATGAGAGACTGAGATGCATGGGatcggatgtgtgtgtgtgtgcgtctctacACCACCTTCTCACGACCCTGAGAAAGGGATAAAGAAAGACAAAGATTGGAAGAGTGGCTActgaataaatgtgtgtgtgtgtgtgtggcgggttAACAAAGGATGGATATCTTACTGATGTTGTATTGGGATTCATTGGGACTTGACAGTATCTCTATCCATGGAGTCCTTATAATcttttactgtacagtatattttcTATCACAGCCAATGGTCAATAGCCAATCAGAATAAACCTTTAACCAATGTGTGCCATGTTTTAGTGTGTAAGGTCAGGATCCCAGCTGCCAGAGTGTCATAGTGTATAGTAAGAGGGCTTATTGTGATGATGAGCCCAGAGCACACAGAACTAATACCGTAGTGGTAAGAAGGATACACACAGGGTCTCAAAATGCTGCTAACTTCCCCCAAATTCCccggttttccagaaatcctatTTGGAAGTTCCTGGAattaggagggaataagcaggataTCCAGGAATCCTCTtactgggatttctggaaaaccagggaatttggggaaagttaatGGAATTTTTCCAACCCTAGCTACCTATATAACCAGGATTGAGTAACATTGCCAGCAAGGACTGGCTTTCAGCGGGTTTCGACAGGCTATCAGCCTAGGAAAAATACAACATGATGTTTATCAGAACTGGGTTGTTTTAGATTGAAATAATCTGAGTCTATTAACCAAACTAAAGGAAATGTTTGTGTGACTTCattttagtatttttttatgACTTAAGTGATGTATTTGTTGGTTATTTTTTATATGACTTTACATTCTGGTTCGATATTACACTGGCATATCTTCACCACTGCTTTTGAAAGAAAGGTCAGTTTACCGGGTCAAAAACGTTATGCGTTGGTCTacgggcgtcaggtagcctagccgTTAAGTGCAttaggccagtaactgaaagctTGCCTGTTCGAAACCCTGAGCCGGCGCGGTGGAAAAATCTTctattctgcccttgagcaaggcagttcacCTGCAACAACTACTCCCCGGGCGCCATGGacgtcaattaaggcagcccccacTGCACATCTCTGATTCAAAGGGTTTCTGTTAGATGTGGAAGACACGGTTGAATGCGTTCAgtttgtgcaactgactaggtatcacctTCTGGGATGCTGCTTGACTCCTTATGTGTTGCGTTGTGCAAAACCAGAGTTGACGAGGAAAAAGGACAAAaaaaaggagggaaagagaattcCTGGAAACACTTTAGCATAGAGTTCTGGAAAGCAGCACATTACCTCAACTCAATGTACATGTGCCAATAACACTCTACATGCTCTAATATCCTCGATGAGAATATATGGCACACATTTCGCTTATAAATAATAAAACAGTTGTTGGAGtcactggatttttttttttttttattgatatgGATTGCATTTGTACGCTCTGGTTGCTTCTAATTCCATTTGTCTACCAAATTATCAAAGCAAAACAATCTACAAGACTCAGCAAGTACAAAGTCGGCAAAATCTTTTTGTGAAGAATTCTCCAGCTTTAAACTAAAGATTTACTCTTAGTGAGAATTAGTGAGCTGTTTAGAACAAATGCCACATGCTATAGTTTATGTACATAGGTTTCCCCTCTGCATCTCCCTTTTCTGTATCCTGTTTAAATGTCCCTCTCGGCTCCCTCTGCAATGTGAATGATCACCACATGCCTCTTCTTCCATAGGTGACTTAGACGGGAGTCATTTTATACTGACCCTCTCTGCTTTGTagtttttataaaaaataatttcACGTTTagctttttctctctccattttgTACATTTCTGGATAGTTTCTAAAACGTTGTAAGCTACACATTTGATGTATCTGCTTTCTTCTACAAGAAACAACAATGTACAAATATTATTGATGTTGTCATTACGTCGTCATTCTATTAAAGCAATTTATTTATACAAAA

Function

symbol description
sox10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in olfactory bulb development. Acts upstream of or within with a positive effect on iridophore differentiation; melanocyte differentiation; and xanthophore differentiation. Acts upstream of or within several processes, including nervous system development; neural crest cell migration; and sensory organ development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; head; iridoblast; nervous system; and neural crest. Used to study Hirschsprung's disease and Waardenburg's syndrome. Human ortholog(s) of this gene implicated in Kallmann syndrome; PCWH syndrome; Waardenburg syndrome type 2E; and Waardenburg syndrome type 4C. Orthologous to human SOX10 (SRY-box transcription factor 10).

NR:

description
transcription factor SOX-10-like

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556808.2 False 3899 mRNA 0.50 4 13728512 13733700
XM_036940339.1 True 3507 mRNA 0.50 4 13728512 13733700

Neighbor

gene id symbol gene type direction distance location
c13h22orf23 cssa12h22orf23 coding downstream 1878 13722821 ~ 13726634 (-)
LOC110485693 LOC106589449 coding downstream 30202 13689763 ~ 13698310 (-)
LOC110485694 LOC106564562 coding downstream 46873 13674650 ~ 13681639 (-)
LOC110485695 LOC106564561 coding downstream 56428 13665802 ~ 13672084 (-)
LOC110485696 LOC106564559 coding downstream 63217 13657453 ~ 13665295 (-)
LOC110485689 LOC106564549 coding upstream 19396 13753096 ~ 13762248 (-)
smdt1b NA coding upstream 47875 13781575 ~ 13783130 (-)
LOC110485704 NA coding upstream 65053 13798679 ~ 13812239 (-)
LOC110485709 NA coding upstream 161888 13895588 ~ 13896731 (-)
LOC110485713 LOC106588978 coding upstream 378826 14112526 ~ 14116588 (-)
G1145310 NA non-coding downstream 9126 13717309 ~ 13719386 (-)
G1145309 NA non-coding downstream 12528 13715675 ~ 13715984 (-)
G1145308 micall1 non-coding downstream 13571 13713723 ~ 13714941 (-)
G1145307 NA non-coding downstream 15236 13712245 ~ 13713276 (-)
G1145306 NA non-coding downstream 16536 13711742 ~ 13711976 (-)
G1145324 NA non-coding upstream 8831 13742531 ~ 13742775 (-)
G1145332 NA non-coding upstream 84516 13818216 ~ 13819806 (-)
G1145110 LOC106589620 other downstream 367704 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 434369 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 557355 13163816 ~ 13178960 (-)
G1145035 NA other downstream 601914 13124870 ~ 13126598 (-)
G1145789 LOC106588930 other upstream 353252 14086952 ~ 14087567 (-)
G1145790 NA other upstream 355958 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 443547 14177247 ~ 14180330 (-)
G1146251 NA other upstream 976882 14710582 ~ 14711954 (-)

Expression


Co-expression Network