septin3 (LOC106589417)


Basic Information

Item Value
gene id septin3
gene name LOC106589417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13822748 ~ 13850213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940348.1
CTCGAGTGTATTTGTCAATGGACATGTCAGAGTCCATTGTTCCCCCTGAAGTGAGACCCAAACCTGCTGTCCCTGCCAAGCCCCCTCATGTGGCAGCACCATCCCCCACAGCACCCCATGGACCATCAGGGCTAGGTGGCGGGGTCGGGGTTGATCGAGTTCCAGGGTTGGGACACTCTGGCGGTGGATCCACGTTGCTGGGATACATTGGGATTGACACCATCATCGAGCAGATGAGGAAGAAGACCATGAAGGCTGGTTTCGACTTCAATATTATGATAGTGGgtCACAGCGGGCTGGGGAAGTCAACACTGGTGAACACGCTGTTCAAGTCCCAGGTCAGCAGGTGGAGCTCAGGATGGGGCAGCGAGCATAAGATCCCCAAGACAGTGGAGATCAAGGCTGTGTCCCACGTGATCGAGGAGGGCGGAGTGAAGATGAAGTTGACAGTAATCGACACACCGGGTTTTGGTGATCAGATCAACAATGAAAACTGCTGGGATCCCATCTCCAAGTACATCAACGAACAGTATGAGAAGTTCCTGAAGGAAGAGGTCAATATTGCTCGAAAGAAGCGAATCCCTGACACTAGAGTTCACTGCTGCCTCTACTTCATCTCCCCAACGGGACACTCtcttcgACAGCTAGACATTGAGTTTATGAAGCACCTAAGTCGTGTGGTGAACATCATCCCCGTCATTGCCAAGTCTGACACCATGACCCTTGACGAGAAGAATGAGTTCAAACACAGGGTGAGGAAGGAGCTGGAGACGCATGGGATTGAGTACTACCCGCAGAATGAGTTTGATGATGATATGGAGGATAAGAATGAAAATGACAAGATTAGGGAGACCATGCCCTTTGCAGTGGTGGGCAGCGACAAGGAGTTCCAAGTGAACGGCAAACGGGTTCTGGGGAGGAAGACAGCCTGGGGTGTGGTAGAAGTTGAAAATCCCAATCACTGCGAATTTGCTCTGCTACGAGATTTCCTCATCAGgTCTCACCTCCAGGACCTGAAGGAAGTCACCCACAACATCCACTATGAAACCTACCGCGCCAGGAGACTCAACGACAACGGAGGTCTGCACCCCATCTCGGCCAACAACACTCAGGAGAGCAACCTTTAAATTTAGGACTAGGGattaaggaaagagagagataaacagagagatcaAAAGATATTGATCGACAAATCTATGTTGTGATATGAGCATCACTGCATGCTTTGGAGAACATTATAGATGTGGAATTCATTGTCGCTCAAAATATCATGTTAGGAGAGCTTTCATTCCAAAACACGTCCTACGTCTCCCTTTCCTCCGCCCGCCGTCCTAAACCGCCCACACTCACATCCCAGTTACACCTGGGATTAAACTTTGATCCTGCAATCCAAAACAAGGCCAACCCCAGTGTTTGCATTTAGCATCGGCGCAATAAATGGTGGCCGCCACTGCAAatgtattttgttatttttgttataatGTAGATGTGTAGATGTATGCCCCAGGAAGAACCCATCCGCCGCCCCCCGCAGGAAGAACCAAGGAAGACCCCATCCGCCACCCCCAGCTAAATCTGCAACCCAAAGAATTTTGGGATTGAAGGGAATTAATCAAATGAAGTACTTCAAATTCGAGGGAATTCCCTTTATTCATCAAAAATGGATTTCCTATTTCCGCTCACCTTGTGCTCTACTCATCCTTGCCCTgtaagtatacagtatgttatgtaGCTGCCACTATAAGAATTGATTTTGTGCTGAAATACTTTATGAAGGGGCTGGTAAATGAGCACCTCAACTTCCACGGAAGCAATGTGACGTAAATATAAATTGACAAAGGGCTTTATTTATTTACAATATAGGTATTTTGTCACTTTATCTTTAAATTGCACAAAATATAGAAATCACAGTCTGAAATGTTCTTTGACATGCACAACTTTTGTGGGCTTTTTTGAAAGCTCTGATGTCAAAGTGACGTGCCAATTCCCTTTAACTCTTTAATGCCGGCTTTCCTTCTCTCTGCCACACGAGGGCAGCGCTTCCCTGCGCATACTCACCCTGTGACAGGAAATGGTTTACTCATAGACTTAGATATATGTCTCTTTTTAGTCCTGTATCTATCTCTATAGTTTACTTCCCTCCCTCCTATTCACTCCCTCCACTTCATCTGGTGACCCATGCCTAGTACATGTTTACAACAAGTCCTCCATTACCAGAGTAATCATTCCAAATCGATCAGTTTCTTATGGAAATCACCCTTCGATAGAGCACAGGTATTCCAGAAGTAGCCTACAAGCAATTAAGTTTCACTATATTTATCAAACAATTCACTTTTGATCTAAACTGGGCTTCCCTGCAAAATTTGTATACAATCAtacaacgtgtgtgtgtttgtatgtgtgtgtgagtgagaagtGACTCAATTTGGTGTCTAACGTTTGGAAATGTGTAGTTCTATATCATTAGTGTGGTATTAGTGAAGACCTTTTTTCAAGGAACaatttaaataatacaaaaaaacaacTTGTTTCTATACAATGTTTTTATGTGTGCATGTCAGGAAACATCTCTCCTAGTCCTTCTGTCATTTTCATTTAAGGATATCCCCAGCTCGCATATCAATGCACAGTCATTTCAATACATTAACCATTTTTGAACGTGGTGTGTACATCAACCAGCCTCGAATAACAATGCATCACTAAAACTCCAGTAACTCAAATCATTCCACATCTCTTAAAAACAGCAGTGAAACTTTTGGCTGTGAATTTCATTTAAAACCCATTTTTCTTAAAAGTTGTTCTGATATGCTGAGATGTCATTTCAGTATTGCATTCTTTATTTATATATTCATGTattatttatagtaatttattgtttatttaataaAAATACTTTTGCCATCTCTTGA
>XM_021556845.2
GCAAAAAGTCTGCACACAATGTAGACTAGAGAGAACCAACAAACTTAGACAACATGAACACAAAAGACAGCAGTGTGAGAACCTAAGAGCTAACAACAAAACGCCATATATACATGTCAGAGTCCATTGTTCCCCCTGAAGTGAGACCCAAACCTGCTGTCCCTGCCAAGCCCCCTCATGTGGCAGCACCATCCCCCACAGCACCCCATGGACCATCAGGGCTAGGTGGCGGGGTCGGGGTTGATCGAGTTCCAGGGTTGGGACACTCTGGCGGTGGATCCACGTTGCTGGGATACATTGGGATTGACACCATCATCGAGCAGATGAGGAAGAAGACCATGAAGGCTGGTTTCGACTTCAATATTATGATAGTGGgtCACAGCGGGCTGGGGAAGTCAACACTGGTGAACACGCTGTTCAAGTCCCAGGTCAGCAGGTGGAGCTCAGGATGGGGCAGCGAGCATAAGATCCCCAAGACAGTGGAGATCAAGGCTGTGTCCCACGTGATCGAGGAGGGCGGAGTGAAGATGAAGTTGACAGTAATCGACACACCGGGTTTTGGTGATCAGATCAACAATGAAAACTGCTGGGATCCCATCTCCAAGTACATCAACGAACAGTATGAGAAGTTCCTGAAGGAAGAGGTCAATATTGCTCGAAAGAAGCGAATCCCTGACACTAGAGTTCACTGCTGCCTCTACTTCATCTCCCCAACGGGACACTCtcttcgACAGCTAGACATTGAGTTTATGAAGCACCTAAGTCGTGTGGTGAACATCATCCCCGTCATTGCCAAGTCTGACACCATGACCCTTGACGAGAAGAATGAGTTCAAACACAGGGTGAGGAAGGAGCTGGAGACGCATGGGATTGAGTACTACCCGCAGAATGAGTTTGATGATGATATGGAGGATAAGAATGAAAATGACAAGATTAGGGAGACCATGCCCTTTGCAGTGGTGGGCAGCGACAAGGAGTTCCAAGTGAACGGCAAACGGGTTCTGGGGAGGAAGACAGCCTGGGGTGTGGTAGAAGTTGAAAATCCCAATCACTGCGAATTTGCTCTGCTACGAGATTTCCTCATCAGgTCTCACCTCCAGGACCTGAAGGAAGTCACCCACAACATCCACTATGAAACCTACCGCGCCAGGAGACTCAACGACAACGGAGGTCTGCACCCCATCTCGGCCAACAACACTCAGGAGAGCAACCTTTAAATTTAGGACTAGGGattaaggaaagagagagataaacagagagatcaAAAGATATTGATCGACAAATCTATGTTGTGATATGAGCATCACTGCATGCTTTGGAGAACATTATAGATGTGGAATTCATTGTCGCTCAAAATATCATGTTAGGAGAGCTTTCATTCCAAAACACGTCCTACGTCTCCCTTTCCTCCGCCCGCCGTCCTAAACCGCCCACACTCACATCCCAGTTACACCTGGGATTAAACTTTGATCCTGCAATCCAAAACAAGGCCAACCCCAGTGTTTGCATTTAGCATCGGCGCAATAAATGGTGGCCGCCACTGCAAatgtattttgttatttttgttataatGTAGATGTGTAGATGTATGCCCCAGGAAGAACCCATCCGCCGCCCCCCGCAGGAAGAACCAAGGAAGACCCCATCCGCCACCCCCAGCTAAATCTGCAACCCAAAGAATTTTGGGATTGAAGGGAATTAATCAAATGAAGTACTTCAAATTCGAGGGAATTCCCTTTATTCATCAAAAATGGATTTCCTATTTCCGCTCACCTTGTGCTCTACTCATCCTTGCCCTgtaagtatacagtatgttatgtaGCTGCCACTATAAGAATTGATTTTGTGCTGAAATACTTTATGAAGGGGCTGGTAAATGAGCACCTCAACTTCCACGGAAGCAATGTGACGTAAATATAAATTGACAAAGGGCTTTATTTATTTACAATATAGGTATTTTGTCACTTTATCTTTAAATTGCACAAAATATAGAAATCACAGTCTGAAATGTTCTTTGACATGCACAACTTTTGTGGGCTTTTTTGAAAGCTCTGATGTCAAAGTGACGTGCCAATTCCCTTTAACTCTTTAATGCCGGCTTTCCTTCTCTCTGCCACACGAGGGCAGCGCTTCCCTGCGCATACTCACCCTGTGACAGGAAATGGTTTACTCATAGACTTAGATATATGTCTCTTTTTAGTCCTGTATCTATCTCTATAGTTTACTTCCCTCCCTCCTATTCACTCCCTCCACTTCATCTGGTGACCCATGCCTAGTACATGTTTACAACAAGTCCTCCATTACCAGAGTAATCATTCCAAATCGATCAGTTTCTTATGGAAATCACCCTTCGATAGAGCACAGGTATTCCAGAAGTAGCCTACAAGCAATTAAGTTTCACTATATTTATCAAACAATTCACTTTTGATCTAAACTGGGCTTCCCTGCAAAATTTGTATACAATCAtacaacgtgtgtgtgtttgtatgtgtgtgtgagtgagaagtGACTCAATTTGGTGTCTAACGTTTGGAAATGTGTAGTTCTATATCATTAGTGTGGTATTAGTGAAGACCTTTTTTCAAGGAACaatttaaataatacaaaaaaacaacTTGTTTCTATACAATGTTTTTATGTGTGCATGTCAGGAAACATCTCTCCTAGTCCTTCTGTCATTTTCATTTAAGGATATCCCCAGCTCGCATATCAATGCACAGTCATTTCAATACATTAACCATTTTTGAACGTGGTGTGTACATCAACCAGCCTCGAATAACAATGCATCACTAAAACTCCAGTAACTCAAATCATTCCACATCTCTTAAAAACAGCAGTGAAACTTTTGGCTGTGAATTTCATTTAAAACCCATTTTTCTTAAAAGTTGTTCTGATATGCTGAGATGTCATTTCAGTATTGCATTCTTTATTTATATATTCATGTattatttatagtaatttattgtttatttaataaAAATACTTTTGCCATCTCTTGA
>XM_021556844.2
agaggcagagagagacagagggaaagaggtaCTCAGACAAATCACATGACCCGTTTCCTACATCTTTGCTTCTCTATGTTGGACATCCATCGTTTATTCTTGAGCATTGGGTTGAAAGACTAGTCGAAATTTCACTAGCGCGGAACAAAACTATTTGGGAAATTGAATCTATAAACAGGAATCGACATGTCAGAGTCCATTGTTCCCCCTGAAGTGAGACCCAAACCTGCTGTCCCTGCCAAGCCCCCTCATGTGGCAGCACCATCCCCCACAGCACCCCATGGACCATCAGGGCTAGGTGGCGGGGTCGGGGTTGATCGAGTTCCAGGGTTGGGACACTCTGGCGGTGGATCCACGTTGCTGGGATACATTGGGATTGACACCATCATCGAGCAGATGAGGAAGAAGACCATGAAGGCTGGTTTCGACTTCAATATTATGATAGTGGgtCACAGCGGGCTGGGGAAGTCAACACTGGTGAACACGCTGTTCAAGTCCCAGGTCAGCAGGTGGAGCTCAGGATGGGGCAGCGAGCATAAGATCCCCAAGACAGTGGAGATCAAGGCTGTGTCCCACGTGATCGAGGAGGGCGGAGTGAAGATGAAGTTGACAGTAATCGACACACCGGGTTTTGGTGATCAGATCAACAATGAAAACTGCTGGGATCCCATCTCCAAGTACATCAACGAACAGTATGAGAAGTTCCTGAAGGAAGAGGTCAATATTGCTCGAAAGAAGCGAATCCCTGACACTAGAGTTCACTGCTGCCTCTACTTCATCTCCCCAACGGGACACTCtcttcgACAGCTAGACATTGAGTTTATGAAGCACCTAAGTCGTGTGGTGAACATCATCCCCGTCATTGCCAAGTCTGACACCATGACCCTTGACGAGAAGAATGAGTTCAAACACAGGGTGAGGAAGGAGCTGGAGACGCATGGGATTGAGTACTACCCGCAGAATGAGTTTGATGATGATATGGAGGATAAGAATGAAAATGACAAGATTAGGGAGACCATGCCCTTTGCAGTGGTGGGCAGCGACAAGGAGTTCCAAGTGAACGGCAAACGGGTTCTGGGGAGGAAGACAGCCTGGGGTGTGGTAGAAGTTGAAAATCCCAATCACTGCGAATTTGCTCTGCTACGAGATTTCCTCATCAGgTCTCACCTCCAGGACCTGAAGGAAGTCACCCACAACATCCACTATGAAACCTACCGCGCCAGGAGACTCAACGACAACGGAGGTCTGCACCCCATCTCGGCCAACAACACTCAGGAGAGCAACCTTTAAATTTAGGACTAGGGattaaggaaagagagagataaacagagagatcaAAAGATATTGATCGACAAATCTATGTTGTGATATGAGCATCACTGCATGCTTTGGAGAACATTATAGATGTGGAATTCATTGTCGCTCAAAATATCATGTTAGGAGAGCTTTCATTCCAAAACACGTCCTACGTCTCCCTTTCCTCCGCCCGCCGTCCTAAACCGCCCACACTCACATCCCAGTTACACCTGGGATTAAACTTTGATCCTGCAATCCAAAACAAGGCCAACCCCAGTGTTTGCATTTAGCATCGGCGCAATAAATGGTGGCCGCCACTGCAAatgtattttgttatttttgttataatGTAGATGTGTAGATGTATGCCCCAGGAAGAACCCATCCGCCGCCCCCCGCAGGAAGAACCAAGGAAGACCCCATCCGCCACCCCCAGCTAAATCTGCAACCCAAAGAATTTTGGGATTGAAGGGAATTAATCAAATGAAGTACTTCAAATTCGAGGGAATTCCCTTTATTCATCAAAAATGGATTTCCTATTTCCGCTCACCTTGTGCTCTACTCATCCTTGCCCTgtaagtatacagtatgttatgtaGCTGCCACTATAAGAATTGATTTTGTGCTGAAATACTTTATGAAGGGGCTGGTAAATGAGCACCTCAACTTCCACGGAAGCAATGTGACGTAAATATAAATTGACAAAGGGCTTTATTTATTTACAATATAGGTATTTTGTCACTTTATCTTTAAATTGCACAAAATATAGAAATCACAGTCTGAAATGTTCTTTGACATGCACAACTTTTGTGGGCTTTTTTGAAAGCTCTGATGTCAAAGTGACGTGCCAATTCCCTTTAACTCTTTAATGCCGGCTTTCCTTCTCTCTGCCACACGAGGGCAGCGCTTCCCTGCGCATACTCACCCTGTGACAGGAAATGGTTTACTCATAGACTTAGATATATGTCTCTTTTTAGTCCTGTATCTATCTCTATAGTTTACTTCCCTCCCTCCTATTCACTCCCTCCACTTCATCTGGTGACCCATGCCTAGTACATGTTTACAACAAGTCCTCCATTACCAGAGTAATCATTCCAAATCGATCAGTTTCTTATGGAAATCACCCTTCGATAGAGCACAGGTATTCCAGAAGTAGCCTACAAGCAATTAAGTTTCACTATATTTATCAAACAATTCACTTTTGATCTAAACTGGGCTTCCCTGCAAAATTTGTATACAATCAtacaacgtgtgtgtgtttgtatgtgtgtgtgagtgagaagtGACTCAATTTGGTGTCTAACGTTTGGAAATGTGTAGTTCTATATCATTAGTGTGGTATTAGTGAAGACCTTTTTTCAAGGAACaatttaaataatacaaaaaaacaacTTGTTTCTATACAATGTTTTTATGTGTGCATGTCAGGAAACATCTCTCCTAGTCCTTCTGTCATTTTCATTTAAGGATATCCCCAGCTCGCATATCAATGCACAGTCATTTCAATACATTAACCATTTTTGAACGTGGTGTGTACATCAACCAGCCTCGAATAACAATGCATCACTAAAACTCCAGTAACTCAAATCATTCCACATCTCTTAAAAACAGCAGTGAAACTTTTGGCTGTGAATTTCATTTAAAACCCATTTTTCTTAAAAGTTGTTCTGATATGCTGAGATGTCATTTCAGTATTGCATTCTTTATTTATATATTCATGTattatttatagtaatttattgtttatttaataaAAATACTTTTGCCATCTCTTGA

Function

NR:

description
neuronal-specific septin-3-like isoform X1

GO: NA

KEGG:

id description
K16938 SEPT3_9_12; septin 3/9/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940348.1 False 2909 mRNA 0.43 10 13822748 13850213
XM_021556845.2 False 2999 mRNA 0.43 10 13823127 13850213
XM_021556844.2 True 3072 mRNA 0.43 10 13824252 13850213
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485706 LOC106564548 coding upstream 2927 13813935 ~ 13819821 (+)
LOC110485703 cenpm coding upstream 19334 13789692 ~ 13803414 (+)
LOC110485700 LOC105012183 coding upstream 33710 13783518 ~ 13789038 (+)
LOC110485701 triobp coding upstream 40988 13775791 ~ 13782295 (+)
LOC110485691 micall1 coding upstream 98305 13699062 ~ 13724443 (+)
LOC110485708 LOC106564542 coding downstream 46518 13896731 ~ 13957622 (+)
LOC110485710 LOC106589277 coding downstream 112488 13962701 ~ 14089440 (+)
LOC110485711 LOC106588956 coding downstream 254854 14105067 ~ 14112666 (+)
LOC110485714 LOC106588995 coding downstream 274937 14125150 ~ 14136711 (+)
LOC110485715 LOC106589218 coding downstream 287331 14137544 ~ 14175896 (+)
G1144883 NA non-coding upstream 67569 13753196 ~ 13755179 (+)
G1144878 NA non-coding upstream 76539 13745916 ~ 13746209 (+)
G1144876 NA non-coding upstream 80662 13740566 ~ 13742086 (+)
G1145442 NA non-coding downstream 128264 13978477 ~ 13981969 (+)
G1145425 NA non-coding downstream 244541 14094754 ~ 14095390 (+)
G1145497 NA non-coding downstream 249743 14099956 ~ 14100327 (+)
G1145509 NA non-coding downstream 268142 14118355 ~ 14118593 (+)
LOC110487284 LOC107691491 other upstream 133954 13681729 ~ 13689683 (+)
G1144655 NA other upstream 308805 13509213 ~ 13513943 (+)
LOC110485680 LOC106564571 other upstream 320268 13499396 ~ 13505510 (+)
G1144683 NA other upstream 490875 13330813 ~ 13331873 (+)
G1145578 LOC106581475 other downstream 426496 14276709 ~ 14277333 (+)
LOC110485721 LOC106588948 other downstream 448043 14298243 ~ 14299604 (+)
LOC110485722 NA other downstream 453522 14301288 ~ 14305526 (+)
bmerb1 LOC106564575 other downstream 464669 14314608 ~ 14339355 (+)

Expression

septin3(LOC106589417) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
End of interactive chart.

septin3(LOC106589417) Expression in each Bioproject

Bar chart with 20 bars.
septin3(LOC106589417) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network