Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110485733 |
| gene name | xylt1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 14546527 ~ 14674363 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| xylt1 | Predicted to enable protein xylosyltransferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in cartilage element; forebrain; and opercle. Human ortholog(s) of this gene implicated in Desbuquois dysplasia; pseudoxanthoma elasticum; and type 1 diabetes mellitus. Orthologous to human XYLT1 (xylosyltransferase 1). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036940395.1 | False | 6507 | mRNA | 0.49 | 11 | 14546527 | 14674363 |
| TU1307348 | False | 995 | lncRNA | 0.37 | 1 | 14546557 | 14547551 |
| TU1307347 | True | 2435 | lncRNA | 0.39 | 1 | 14546625 | 14549059 |
14,520,000
14,540,000
14,560,000
14,580,000
14,600,000
14,620,000
14,640,000
14,660,000
14,680,000
14,700,000
14,720,000
14,740,000
14,760,000
14,780,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110485729 | LOC106588920 | coding | downstream | 95176 | 14420198 ~ 14451351 (-) |
| LOC110485730 | cp063 | coding | downstream | 127771 | 14415041 ~ 14418756 (-) |
| LOC110485728 | LOC100380663 | coding | downstream | 137397 | 14369684 ~ 14409130 (-) |
| LOC110485726 | LOC106564611 | coding | downstream | 184546 | 14339653 ~ 14361981 (-) |
| LOC110485718 | NA | coding | downstream | 277150 | 14265680 ~ 14269377 (-) |
| LOC110487291 | LOC106564596 | coding | upstream | 130305 | 14804668 ~ 14843432 (-) |
| LOC110487289 | LOC106588894 | coding | upstream | 201480 | 14875843 ~ 14891457 (-) |
| LOC110485736 | sec23b | coding | upstream | 221467 | 14895830 ~ 14911145 (-) |
| LOC118938532 | NA | coding | upstream | 461239 | 15135602 ~ 15141540 (-) |
| LOC118938534 | LOC106564623 | coding | upstream | 680303 | 15354666 ~ 15357765 (-) |
| G1146147 | NA | non-coding | downstream | 7256 | 14538840 ~ 14539271 (-) |
| G1146144 | NA | non-coding | downstream | 12307 | 14533984 ~ 14534220 (-) |
| G1146136 | NA | non-coding | downstream | 31621 | 14514688 ~ 14514906 (-) |
| G1146135 | NA | non-coding | downstream | 31915 | 14514371 ~ 14514612 (-) |
| G1146131 | NA | non-coding | downstream | 36042 | 14510198 ~ 14510485 (-) |
| G1146228 | NA | non-coding | upstream | 3812 | 14678175 ~ 14678662 (-) |
| G1146229 | NA | non-coding | upstream | 7251 | 14681614 ~ 14681819 (-) |
| G1146246 | NA | non-coding | upstream | 30267 | 14704630 ~ 14705135 (-) |
| G1146248 | NA | non-coding | upstream | 31198 | 14705561 ~ 14706682 (-) |
| G1146255 | NA | non-coding | upstream | 45078 | 14719441 ~ 14720085 (-) |
| G1145830 | LOC103354157 | other | downstream | 366197 | 14177247 ~ 14180330 (-) |
| G1145790 | NA | other | downstream | 455740 | 14089658 ~ 14090787 (-) |
| G1145789 | LOC106588930 | other | downstream | 458960 | 14086952 ~ 14087567 (-) |
| LOC110485704 | NA | other | downstream | 734288 | 13798679 ~ 13812239 (-) |
| LOC110485696 | LOC106564559 | other | downstream | 882907 | 13657453 ~ 13665295 (-) |
| G1146251 | NA | other | upstream | 36219 | 14710582 ~ 14711954 (-) |
| G1146446 | NA | other | upstream | 122303 | 14796666 ~ 14797272 (-) |
| G1146485 | NA | other | upstream | 248247 | 14922610 ~ 14925617 (-) |
| LOC110485744 | LOC106588598 | other | upstream | 707797 | 15376146 ~ 15383913 (-) |
| LOC110485748 | pdcd11 | other | upstream | 760738 | 15432063 ~ 15454831 (-) |
| G1146152 | NA | non-coding | upstream | 3078 | 14552137 ~ 14552359 (-) |
| G1146153 | NA | non-coding | upstream | 3435 | 14552494 ~ 14552698 (-) |
| G1146156 | NA | non-coding | upstream | 7709 | 14556768 ~ 14556991 (-) |
| G1146161 | NA | non-coding | upstream | 12946 | 14562005 ~ 14564299 (-) |
| G1146127 | NA | non-coding | upstream | 15592 | 14564651 ~ 14570094 (-) |
