XLOC_030211 (rpl12)


Basic Information

Item Value
gene id XLOC_030211
gene name rpl12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32882688 ~ 32887020 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059075
CTTGCGCTCTCTTCGGCCTTTTCCTTTTTCACTTTTGTGGTGAAGGTGCAACAGTTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCCTCACCAATTCCAATTGAAGTGAACTCAACTTCATCTGATACACCATGCCTCCTAAATTCGACCCCAACGAGATTAAAGTTGtgttCATGAGATGCACTGGTGGAGAGGTCGGTGCCACTTCCTCGCTGGCCCCCAAAATTGGACCTTTGGGTCTTTCCCCTAAAAAGGTGGGTGATGACATCGCAAAGGCCACCGGTGACTGGAAGGGCCTGAGAATCACTGTGAAGCTGACCATCCAGAACAGACAAGCAGCGATTGAGGTAGTGCCATCAGCCTCTGCCCTCATTATCAAGGCTCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACATCAAGCACTCTGGAAGTGTTGCTTTTGATGAGATCGTCAACATTGCCCGCGTCATGAGGCACAGATCAATTGCCAGGGAACTTTCAGGTACCATTAAGGAGATTCTTGGCACAGCTCAGTCTGTGGGCTGCACCATTGATGGTCGCCTTCCCCATGATGTCATTGATGACATCAACAGCGGTGCAGTTGAGTGCCCAACTGAGTAAAATGGAGGATTGAAGACCAAAATAAATTTTTCATAAGCATAAAGTTTGACTTCTGTGGTTTGTGACCTTCTATAATCCTCAATGTATTGTAGAGAAGGGATCTGGGCCTTGAGGTGAGAGGATACTTTAAAAGGAAAATGTTTAGTATTAAAGT
>TCONS_00059076
TCGGCCTTTTCCTTTTTCACTTTTGTGGTGAAGGTGCAACAGTTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCCTCACCAATTCCAATTGAAGTGAACTCAACTTCATCTGATACACCATGCCTCCTAAATTCGACCCCAACGAGATTAAAGTTGtgttCATGAGATGCACTGGTGGAGAGGTCGGTGCCACTTCCTCGCTGGCCCCCAAAATTGGACCTTTGGGTCTTTCCCCTAAAAAGGTGGGTGATGACATCGCAAAGGCCACCGGTGACTGGAAGGGCCTGAGAATCACTGTGAAGCTGACCATCCAGAACAGACAAGCAGCGATTGAGGTAGTGCCATCAGCCTCTGCCCTCATTATCAAGGCTCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACAGTAAGTGGCTTTTTACCCCACCTCAATGCACTATTGTAGGAATGGCATCTTTTGTGTCTTGTGACCTTTTGTGGCTATGGACCGTGAGCCTCCCGCCACTGTGCTTGTCTGTAAGAGTGACTGTGTACTGTCCAGAGGAGGCTCAGAGTGACCCAGCTCTAGGAAGCAGAACTGCCCAGTTTCATGGGTAACTCTGTGCCGAAAGGTCTGGGACATGTTTACTTGTGCAAATCAGAGCTTTATTGTATGGTAGAATATAGTGCACGCATACAAGGCACGATATTCATGGTAAAGGATATGAAAAATGGAAATATTTGCCAGTAAAAACATTAAGGATACAAGTTTGTGgtcagtaacttatttaattaaatgttgctGCTAAAATATTTACATCAATCCTGAA
>TCONS_00059077
TTTCCTTTTTCACTTTTGTGGTGAAGGTGCAACAGTTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCCTCACCAATTCCAATTGAAGTGAACTCAACTTCATCTGATACACCATGCCTCCTAAATTCGACCCCAACGAGATTAAAGTTGGTATGTGTGAGGAATACTGTAACGTTTCGACGGGTTTTTGAGCGTGACCAAGCGGCCATGTTTGTGCTCTGGGCTCCAGAGCGCCGGGACTATAATAAACGATGAATGGtgttCATGAGATGCACTGGTGGAGAGGTCGGTGCCACTTCCTCGCTGGCCCCCAAAATTGGACCTTTGGGTCTTTCCCCTAAAAAGGTGGGTGATGACATCGCAAAGGCCACCGGTGACTGGAAGGGCCTGAGAATCACTGTGAAGCTGACCATCCAGAACAGACAAGCAGCGATTGAGGTAGTGCCATCAGCCTCTGCCCTCATTATCAAGGCTCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACATCAAGCACTCTGGAAGTGTTGCTTTTGATGAGATCGTCAACATTGCCCGCGTCATGAGGCACAGATCAATTGCCAGGGAACTTTCAGGTACCATTAAGGAGATTCTTGGCACAGCTCAGTCTGTGGGCTGCACCATTGATGGTCGCCTTCCCCATGATGTCATTGATGACATCAACAGCGGTGCAGTTGAGTGCCCAACTGAGTAAAATGGAGGATTGAAGACCAAAATAAATTTTTCATAAGCATAAA
>TCONS_00059078
ACCATGCCTCCTAAATTCGACCCCAACGAGATTAAAGTTGtgttCATGAGATGCACTGGTGGAGAGGTCGGTGCCACTTCCTCGCTGGCCCCCAAAATTGGACCTTTGGGTCTTTCCCCTAAAAAGGTGGGTGATGACATCGCAAAGGCCACCGGTGACTGGAAGGGCCTGAGAATCACTGTGAAGCTGACCATCCAGAACAGACAAGCAGCGATTGAGGTAGTGCCATCAGCCTCTGCCCTCATTATCAAGGCTCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACATCAAGCACTCTGGAAGTGTTGCTTTTGATGAGATCGTCAACATTGCCCGCGTCATGAGGCACAGATCAATTGCCAGGGAACTTTCAGGTACCATTAAGGAGATTCTTGGCACAGCTCAGTCTGTGGGCTGCACCATTGATGGTCGCCTTCCCCATGATGTCATTGATGACATCAACAGCGGTGCAGTTGAGTGCCCAACTGTAAGTATTGTGCCACTAATCCTGCTTT
>TCONS_00059079
CAGTTTgcccattttcttttcggttgtAGCATAATTATTATGGCTTGCATTTTTTTAACTGACCTTTGTAAGATGCTGTGCTGTTTTCAGTTGCTGTAAATGATACACGATGCTAAATAGTTTAAGTTCTCTCTTCGCTAATGTCACACAGCAGTCAACACAATCTTAAGAACATTGTGAGTTTAGTTGTTAATGAGGCTAGTTGTCTCTCTACAtttcttaatttagtttttttctttttagtgttCATGAGATGCACTGGTGGAGAGGTCGGTGCCACTTCCTCGCTGGCCCCCAAAATTGGACCTTTGGGTCTTTCCCCTAAAAAGGTGGGTGATGACATCGCAAAGGCCACCGGTGACTGGAAGGGCCTGAGAATCACTGTGAAGCTGACCATCCAGAACAGACAAGCAGCGATTGAGGTAGTGCCATCAGCCTCTGCCCTCATTATCAAGGCTCTGAAGGAACCTCCCCGTGACAGGAAGAAGGTCAAGAACATCAAGCACTCTGGAAGTGTTGCTTTTGATGAGATCGTCAACATTGCCCGCGTCATGAGGCACAGATCAATT
>TCONS_00059081
CCCGCCACTGTGCTTGTCTGTAAGAGTGACTGTGTACTGTCCAGAGGAGGCTCAGAGTGACCCAGCTCTAGGAAGCAGAACTGCCCAGTTTCATGGGTAACTCTGTGCCGAAAGGTCTGGGACATGT

Function

symbol description
rpl12 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL12 (ribosomal protein L12).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-5297 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL12 (ribosomal protein L12).

Ensembl:

ensembl_id ENSDARG00000006691 ENSDARG00000085713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059075 False 787 mRNA 0.47 7 32882688 32887020
TCONS_00059076 False 818 lncRNA 0.46 4 32882700 32886071
TCONS_00059077 False 766 processed_transcript 0.49 7 32882707 32886909
TCONS_00059078 False 523 mRNA 0.51 6 32882820 32886809
TCONS_00059079 False 569 lncRNA 0.44 4 32883593 32886408
TCONS_00059081 True 127 snoRNA 0.54 1 32885760 32885886

Neighbor

gene id symbol gene type direction distance location
XLOC_030210 crata coding upstream 22988 32815745 ~ 32859700 (+)
XLOC_030209 ier5l coding upstream 89207 32791245 ~ 32793481 (+)
XLOC_030208 CR376857.1 coding upstream 244923 32637648 ~ 32637765 (+)
XLOC_030207 ndor1 coding upstream 383952 32490238 ~ 32498736 (+)
XLOC_030206 NA coding upstream 515207 32358880 ~ 32367481 (+)
XLOC_030214 ccn1l1 coding downstream 27301 32914321 ~ 32920149 (+)
XLOC_030215 lmo4a coding downstream 37649 32924669 ~ 32962023 (+)
XLOC_030216 CR855258.1 coding downstream 106766 32993786 ~ 32993891 (+)
XLOC_030217 npffr2b coding downstream 180263 33067283 ~ 33104366 (+)
XLOC_030218 surf1 coding downstream 394085 33281105 ~ 33283718 (+)
XLOC_030204 NA non-coding upstream 618628 32260163 ~ 32264060 (+)
XLOC_030198 NA non-coding upstream 796111 32083729 ~ 32086577 (+)
XLOC_030192 NA non-coding upstream 964552 31911003 ~ 31918136 (+)
XLOC_030221 NA non-coding downstream 445429 33332449 ~ 33338469 (+)
XLOC_030228 NA non-coding downstream 1048599 33935619 ~ 33937420 (+)
XLOC_030229 NA non-coding downstream 1406241 34293261 ~ 34295073 (+)
XLOC_030234 NA non-coding downstream 1756427 34643447 ~ 34797351 (+)

Expression


Co-expression Network