LOC110487300


Basic Information

Item Value
gene id LOC110487300
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 17056420 ~ 17386459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110487300
tggggaaagaggggtggggattattcctagttaaagctggggaaagacGGTGGTATTTTTGTCAGTGACAAATGCACTGCTGCTTTTTCCAATTCAAATCTGTTGCAGGGAAAGAAAACACAGCCGTTTAGGCTGTGACACTATCCAAGTCACGCTTTTCCTTCTCCCTTTTCTGTCTGGGTTTAGTAGTTTCTTATAATTATAGCATATTTGAGCTATGTATGTCTTATTAATCAAGATATCTATGGATTATTTTGAGAGAAAAAATCCATGGTTTTATATAGAGGAAATGGTTTTTAGggatatttctgtgttttgtgagTAATGAACTGTAATGAAAATGTATGCTTTACATcgcacccccccaaaaaatcatatTATACCAAGATATAGATACTACACGAATAAGGTCAGATTTTGTTACAATGTAGTatttaatattatatatatatatcatacagGCTTCCAAACCAAGGGCTTCATCTTAATTAAGTTGTGTCAATGTTGTGTACTTTCACAGTAtcttattttatagtatgaacaTGTACTGCAATTTACATGTTTATACCTAATACCTACATTTGTATTCCTATTATGATTTTAGTTTTACAGATTGTGCTCTGTTATTGCTTTCACAAGAGGCTCATTTCCAACAAATATGCAGcaacacatttacattttcaCTGAATTTATGACGAAATGAAAGTAGAGACTATATTATTTCTAGCATGGAAATAGAAATCCTCCCATGGTGGTAAGAGTCACGCCCATAGATAgatagtcacgccctgaccatagagagctttttattcctctattttggtttggtcagggtgtgatttgggtgggcattctatgtcctttttctatgctttgtatttctttgttttggccgggtatggttctcaatcagggacagctgtctctcattgtctctgtttgggaaccatacttaggtagttttttccccacatgggttttgtgggtagttattttctgtttagtgtttgcacCTTTCAGAACTGTTTTGTGTTGTGCCATTTTGTCTGTGTTCAGTTTTAATAAATAATTATGAatactgcgctttggtccgatccttctacATACGACGAGAGTTACAGTAAGATTGAGCATTCCACAAAGACATTCTTTATTGCACAAATATTTGTTCTTTCTTATCACACATTTAAATATTGTTCAAAACAAATTGCATTGCgtagacatttttattttatttatttcacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaactgagctGTAGTCACGCATGGTAAATGCAAAGTTGTGGAGTTCTCTCTTCCTTCACAGCGGTGTTACAGAATACCATAGCACAGCAGCCTATTGATCTACACTATATTCTTACAACTTAAAACTTATCCTATTCTTTAACATAGCAACTTATTGTTTTAGTTGTGTTGTGGCCCCTCACGATTTACTTACacctctatttaaaaaaaaaatgtttttaacctttatttagctaggcaagtcagttaagaacaaattcttatttacaatgacggcgtaggaacagtgggttaactgccttgttcaggggcagaacaacagatttttaccttgtcagctcggggatttgatctagcaacctatCTCATTAAAGTGAATGCATCTGGACAGGGGTGACTGGAAGCCAAAGTGCACCAAAGAACAGACCTGTGAGTGCACTGGAAGAGGCCAAAACCATGGCAACAGAGGTGAGAGGCACATTTGTAAATTGAAGTCCAAAACAAAGTGAAGGTCTTAGCGCTAGTAACAGCATGCTGCATGCCAACCACTAGACCTGGAGTGCTGatatggctctctctctcctctctcttctctctccactctctctctctaccctctctctctctctccaccctctctctctctccactctctctctctctctctctaccctctccctctcttccagaTAATGGTGCTGACAGACCCTGAGTTTGAGAGCAGTGTGCTCATCAGCTCAGATGAAAGAGCGAGCTATCCGAAATGCCGCCTTAGCTTCTACATCCTAATCCTTCTGTTCCATCCAACACAGGAGGACTGGGCTCTAGGCTACAGCCACGATCAGAAGTTGTACGCCTCCCTGGACTTTGGGAGTAAATAGCCGCTGGTTCATGAGCATGTGAAGAGGTTCTACTGGTTTGTAATGGGTCTAGACAAGGAGTCAGATCTGGTTAACATGGAGTATACAagacataaaatAGATCCATCCCTCAAAATCAAACTGCCCAAATATTCTCTGCCTAAGGTAAGCAACATTAATTTTACAGTGATAAACAACATCATCGCTGCAGTGCCAGAGTGGAACCAGAAGGACACATACAACCTGTACCTCTCCGACACCCTGGCCATGGAGAATGTCAAGACCACCCAGATGCTGGACCTGTATGAGGTAGCAGGTATCAAAGGCATGCTGGTCGCTAACAGGAGGCTAGACAACCAAGTGAAGATCTACATCACCTACAACAAGGGCCGTGATTGGAGGTTCCTGCAGGCCCCGGCGACAGGCCTGGCTGGCAACAACACCCACTGTTTTCAGCCTTTCTGTTCGCTCCGTCTCCAACTGCAGAAGTCTGAAAACCCCTATGTGTCAGGCAGCATATCAACCAAGGCCTCAGCACCGGGAATCATAGTGGCCACAGGGAACATTGAGTCTGAGCTGTCAAACAATAATTTTGGAATGTTCATCTCATCTGATGCTGGTAACAACTGGAGAAAGCCTGTATGTGTTTCACAGGGCGAGTCATGTTTGATGGGCCAGAAACAGATCTATATGAAACACAGACCAGGAAACTATTGCATGCTGGGAAAAGACTACATCAAAGTCCTCTCTGCTGAGTCATGTATCTGTTGGGCCCATGACTTTGAATGTGATTATGGTTATGAACGACGTAGAGAAGGGAACTGTCTACCAGCGTTCTGGTTCAACCCAGCTGTTGTATCACGGAGCTGCAGCCAAGGACAGAAGTACCTCATCAGCACAGGGTACCGAAAAGTGGTGTCCAACAACTGCATCAAGGGAGTCAAGGACATGTACACACCCAGGAAGCAGATGTGTCCCAACAGGGCTCCAAAAGGcctttctctctccaccagaGAGGGCAAGCTTACTGCTGACATGCACACCAACGTCACCTTCCTAGTGCATCTAGATGAGATCTATGACCTGTTGGGCACTGAAACGTGCACTCATGGTTTCAGCAAAGAGAGGACTGGGGGGACTGTCATCTGCAGCACCTGTTCTGTGGAACATGTCCAGCTGCTGGCTCCGTTTGTGGCCATCAAGAACAAGGCAGTAAACCTAACAGCAGTGGTGTGGCCTGTCCAGTCAAGGACCCTCACCTACTTCTGGTGGCTGGGGAACAGAAGTGAACCGGTGATCAGCTTAGACTGGAGCATCTACACCTTCACCAGCAAGGGAATGAACACTGTTATGGTCCAAGCGTCTTCAGAAAACGCCATACTGCAAGACACCAAGACGATAGCAGTACAGGagttcTTCAAATCTCTGCTTTTATCTTTCTCCGCTAATCTGGACGAGtacaaccctgatgtccccgaGTGGAGACAGGATGTGGGGGGAGTCATTAAGAAGGCTCTGCTCCAAGTGCGAGAGGCTCGGCTTCTTCTTCCCAAGGCGAGGCAGCTTGATGAGCACTAA

Function

NR:

description
PREDICTED: VPS10 domain-containing receptor SorCS3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110487300 True 3726 mRNA 0.43 17 17056420 17386459

Neighbor

gene id symbol gene type direction distance location
LOC118936445 NA coding upstream 250 16930798 ~ 17056170 (+)
LOC110485785 LOC106586800 coding upstream 163895 16679367 ~ 16892525 (+)
LOC110485783 LOC106586780 coding upstream 577298 16359511 ~ 16479122 (+)
LOC110487299 LOC106586766 coding upstream 696975 16355963 ~ 16359445 (+)
LOC110487298 LOC106586738 coding upstream 734989 16310961 ~ 16322202 (+)
LOC110485792 LOC106586869 coding downstream 683307 18069766 ~ 18076476 (+)
LOC110485794 LOC106586900 coding downstream 735710 18122169 ~ 18124885 (+)
LOC110485795 LOC106586907 coding downstream 745596 18132055 ~ 18169673 (+)
LOC110485098 LOC106564685 coding downstream 788452 18174911 ~ 18202596 (+)
LOC110485796 LOC106586953 coding downstream 817158 18203617 ~ 18218025 (+)
G1148347 NA non-coding upstream 200103 16797469 ~ 16856317 (+)
G1148271 NA non-coding upstream 382175 16673979 ~ 16674245 (+)
G1148186 NA non-coding upstream 497809 16558358 ~ 16558611 (+)
G1148172 NA non-coding upstream 507081 16549133 ~ 16549339 (+)
G1149288 NA non-coding downstream 46778 17433237 ~ 17433451 (+)
G1149289 NA non-coding downstream 47131 17433590 ~ 17433797 (+)
G1149411 NA non-coding downstream 113528 17499987 ~ 17500284 (+)
G1149417 NA non-coding downstream 124529 17510988 ~ 17511536 (+)
G1149434 NA non-coding downstream 137743 17524202 ~ 17524415 (+)
G1148286 NA other upstream 346309 16708824 ~ 16710111 (+)
G1147590 LOC106586738 other upstream 748887 16300976 ~ 16307533 (+)
G1147529 NA other upstream 855793 16199471 ~ 16200627 (+)
LOC110485768 LOC106564707 other upstream 955070 15965856 ~ 16104020 (+)
G1146820 LOC106588633 other upstream 1614561 15438658 ~ 15441859 (+)
LOC110485799 LOC106586988 other downstream 850030 18236043 ~ 18250838 (+)
G1150206 NA other downstream 866815 18253248 ~ 18256354 (+)
G1150536 NA other downstream 1440927 18827386 ~ 18827882 (+)
LOC110485813 LOC106587120 other downstream 1465952 18852294 ~ 18855764 (+)
G1151061 LOC106587131 other downstream 1510609 18897068 ~ 18920852 (+)

Expression

LOC110487300 Expression in all Baseline Samples

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LOC110487300 Expression in each Bioproject

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LOC110487300 Expression in each Sample
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Co-expression Network