Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110485825 |
| gene name | LOC106587236 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 19335163 ~ 19369998 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: mitochondrial Rho GTPase 1-A-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0019725 | cellular homeostasis | biological_process |
| GO:0005741 | mitochondrial outer membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| id | description |
|---|---|
| K07870 | RHOT1, ARHT1; mitochondrial Rho GTPase 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036940498.1 | False | 3641 | mRNA | 0.48 | 20 | 19335163 | 19369997 |
| XM_036940499.1 | True | 3519 | mRNA | 0.48 | 19 | 19335163 | 19369998 |
19,308,000
19,312,000
19,316,000
19,320,000
19,324,000
19,328,000
19,332,000
19,336,000
19,340,000
19,344,000
19,344,000
19,348,000
19,352,000
19,356,000
19,360,000
19,364,000
19,368,000
19,372,000
19,376,000
19,380,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110485824 | LOC106564658 | coding | downstream | 2195 | 19277856 ~ 19332983 (-) |
| LOC110485823 | LOC106587227 | coding | downstream | 69603 | 19258659 ~ 19265560 (-) |
| LOC110485822 | LOC106587218 | coding | downstream | 79789 | 19251828 ~ 19255374 (-) |
| stx8 | LOC106587090 | coding | downstream | 717306 | 18569500 ~ 18617857 (-) |
| LOC110485801 | LOC106587077 | coding | downstream | 867080 | 18439488 ~ 18468083 (-) |
| LOC110487518 | rn135 | coding | upstream | 120 | 19370118 ~ 19372822 (-) |
| LOC110485827 | LOC106564656 | coding | upstream | 9410 | 19379408 ~ 19387327 (-) |
| LOC110485829 | NA | coding | upstream | 20125 | 19388990 ~ 19392179 (-) |
| suz12b | LOC106587302 | coding | upstream | 26211 | 19396209 ~ 19409561 (-) |
| LOC110485834 | NA | coding | upstream | 100420 | 19470418 ~ 19473351 (-) |
| G1151830 | NA | non-coding | downstream | 57688 | 19277219 ~ 19277475 (-) |
| G1151825 | NA | non-coding | downstream | 63992 | 19270953 ~ 19271171 (-) |
| G1151766 | NA | non-coding | downstream | 78648 | 19256117 ~ 19256515 (-) |
| G1151822 | NA | non-coding | downstream | 83613 | 19251211 ~ 19251550 (-) |
| G1151821 | NA | non-coding | downstream | 84624 | 19245067 ~ 19250539 (-) |
| G1151888 | NA | non-coding | upstream | 5564 | 19375562 ~ 19376132 (-) |
| G1151879 | NA | non-coding | upstream | 58156 | 19428154 ~ 19432673 (-) |
| G1151911 | NA | non-coding | upstream | 108280 | 19478278 ~ 19478501 (-) |
| G1151978 | NA | non-coding | upstream | 204602 | 19574600 ~ 19579832 (-) |
| G1151983 | LOC100194703 | non-coding | upstream | 221694 | 19591692 ~ 19592008 (-) |
| G1151820 | NA | other | downstream | 92089 | 19242845 ~ 19243074 (-) |
| G1151819 | LOC106587198 | other | downstream | 92684 | 19241913 ~ 19242479 (-) |
| G1151033 | NA | other | downstream | 481786 | 18852227 ~ 18853377 (-) |
| G1150846 | NA | other | downstream | 779090 | 18555781 ~ 18556073 (-) |
| G1151940 | LOC108272819 | other | upstream | 285776 | 19655774 ~ 19656885 (-) |
| G1152298 | NA | other | upstream | 782435 | 20152433 ~ 20156750 (-) |
| G1152720 | NA | other | upstream | 1133512 | 20503510 ~ 20503766 (-) |
