LOC110487518 (rn135)


Basic Information

Item Value
gene id LOC110487518
gene name rn135
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 19370118 ~ 19372822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559437.2
CATTACACCTCTCAGCAATGAGCATCAGcctcaagacacacacacacagagacacacacactatatttccctgctttcaaacacacacacagaaagagagagataattaatTAGGTGTTTTTCCATGAATTAGATACATGTATTTGTTCTTTGAGAGGGAAAATCCCGTTTTACTGTATTTTCGGTTTCAATTCAGGCATTACAGCCTACACACCGAACCGCAATGGCGTTACTACTTGAAGAACTTCTTACAGATATAGGAACATATCTCACATGTTCAATATGCCTTGACATTTTCACTGATCCAGTGACTTTAACTTGTGGCCACAGTTATTGCATGACATGTTTAGAGGATTGTCTACGTGGAAGAGCGAAGACGAAGGATTGTCCCGATTGCAGAGGAAAAATTCGACCAGGTTTTAAACTGTATAAAAATGTTACACtttgtaacatcgtggatgttcaTTACTACCATAAACGTTTTGCATCCACTGAAGAATTTACTAAAGGACATGAAATGGAAGCGGACTTCAATAAGGATAAAGCTGAAGAATGTGTGGCCTCACACTCACAACAGACTGATATCAACAGACCATCTGAGCTTGGAAGTACTATACAACAGCAACAGATGGAGGACCCTGTTGTTATAAATGACACAAGCTCAGAAGTGACAGATGACCGGTTTCCTGATGTAACAGCCTCCCATGATGGCCGGGTTCAGGAGTTGCCCATCTCCCCTCCCTCAAATGACAGATACAGTGCTGAAGGCTTCGCCCCTCCACCCCATCCCCTGCCTGGGGCCAGCTTCTCCTGGCTCACCTTCAACCCAGCCCAGGGCCACAGGTGCCTGACCTTTCTACCCAATGAGCACAAAGTGGTGACCAAGAGGACGTCCTCTGCATACCACGACGGCCGCTTTGACATCAGCCAGTGGATGGCGGAGCAGGAGTTCAGTGAAGGCTGCCACTATTGGGACGTGGATACGTCAGCGAGCGTGGGCTGGGCTGTCGGGGTTTCCTACCCCAGCATTGGCCGCAGAGATCAGCTGGGTCGCACAGCCAACTCCTGGTGCCTGGAGTGGAGCAGGGACAAGCTGTGCTACTGGCACGATAACATAGGGGTGTTTATCAAACATGGCTGCCCCAGTATCGTTAGACTGGCTCTGGATGTGACAAATGGGACCTTGTCGTTTTATAGCCTGTCTGACAGTCAGACTCTGCTGCATTGTGTGGAGGAGGGATTCACAGAGCCAGTGAGGCCAGTCTTCTGGCTGTTTGGGCTGAAGCTAAACAATgctctgtcctttcctccttGGGTGTCATAAGGTGATGTGAGGATGGGGACAACATAAAGAGTTGTCTGTTTATCAAtgagataaataaaataaaatatttagtaATGAATATATTTAGCACAATATTCCTATTAGATGTCAAAATAAAATGACAAACACCTA
>XM_021559436.2
ACATATTCTCATTACACCTCTCAGCAATGAGCATCAGcctcaagacacacacacacagagacacacacactatatttccctgctttcaaacacacacacagaaagagagagataattaatTAGGTGTTTTTCCATGAATTAGATACATGTATTTGTTCTTTGAGAGGGAAAATCCCGTTTTACTGTATTTTCGGTTTCAATTCAGGCATTACAGCCTACACACCGAACCGCAATGGCGTTACTACTTGAAGAACTTCTTACAGATATAGGAACATATCTCACATGTTCAATATGCCTTGACATTTTCACTGATCCAGTGACTTTAACTTGTGGCCACAGTTATTGCATGACATGTTTAGAGGATTGTCTACGTGGAAGAGCGAAGACGAAGGATTGTCCCGATTGCAGAGGAAAAATTCGACCAGGTTTTAAACTGTATAAAAATGTTACACtttgtaacatcgtggatgttcaTTACTACCATAAACGTTTTGCATCCACTGAAGAATTTACTAAAGGACATGAAATGGAAGCGGACTTCAATAAGGATAAAGCTGAAGAATGTGTGGCCTCACACTCACAACAGACTGATATCAACAGACCATCTGAGCTTGGAAGTACTATACAACAGCAACAGATGGAGGACCCTGTTGTTATAAATGACACAAGCTCAGAAGTGACAGATGACCGGTTTCCTGATGTAACAGCCTCCCATGATGGCCGGGTTCAGGAGTTGCCCATCTCCCCTCCCTCAAATGACAGATACAGTGCTGAAGCAGGCTTCGCCCCTCCACCCCATCCCCTGCCTGGGGCCAGCTTCTCCTGGCTCACCTTCAACCCAGCCCAGGGCCACAGGTGCCTGACCTTTCTACCCAATGAGCACAAAGTGGTGACCAAGAGGACGTCCTCTGCATACCACGACGGCCGCTTTGACATCAGCCAGTGGATGGCGGAGCAGGAGTTCAGTGAAGGCTGCCACTATTGGGACGTGGATACGTCAGCGAGCGTGGGCTGGGCTGTCGGGGTTTCCTACCCCAGCATTGGCCGCAGAGATCAGCTGGGTCGCACAGCCAACTCCTGGTGCCTGGAGTGGAGCAGGGACAAGCTGTGCTACTGGCACGATAACATAGGGGTGTTTATCAAACATGGCTGCCCCAGTATCGTTAGACTGGCTCTGGATGTGACAAATGGGACCTTGTCGTTTTATAGCCTGTCTGACAGTCAGACTCTGCTGCATTGTGTGGAGGAGGGATTCACAGAGCCAGTGAGGCCAGTCTTCTGGCTGTTTGGGCTGAAGCTAAACAATgctctgtcctttcctccttGGGTGTCATAAGGTGATGTGAGGATGGGGACAACATAAAGAGTTGTCTGTTTATCAAtgagataaataaaataaaatatttagtaATGAATATATTTAGCACAATATTCCTATTAGATGTCAAAATAAAATGACAAACACCTA
>XM_036940504.1
CATTCATTGACATATTCTCATTACACCTCTCAGCAATGAGCATCAGcctcaagacacacacacacagagacacacacactatatttccctgctttcaaacacacacacagaaagagagagataattaatTAGGTGTTTTTCCATGAATTAGATACATGTATTTGTTCTTTGAGAGGGAAAATCCCGTTTTACTGTATTTTCGGTTTCAATTCAGGCATTACAGCCTACACACCGAACCGCAATGGCGTTACTACTTGAAGAACTTCTTACAGATATAGGAACATATCTCACATGTTCAATATGCCTTGACATTTTCACTGATCCAGTGACTTTAACTTGTGGCCACAGTTATTGCATGACATGTTTAGAGGATTGTCTACGTGGAAGAGCGAAGACGAAGGATTGTCCCGATTGCAGAGGAAAAATTCGACCAGGTTTTAAACTGTATAAAAATGTTACACtttgtaacatcgtggatgttcaTTACTACCATAAACGTTTTGCATCCACTGAAGAATTTACTAAAGGACATGAAATGGAAGCGGATAAAGCTGAAGAATGTGTGGCCTCACACTCACAACAGACTGATATCAACAGACCATCTGAGCTTGGAAGTACTATACAACAGCAACAGATGGAGGACCCTGTTGTTATAAATGACACAAGCTCAGAAGTGACAGATGACCGGTTTCCTGATGTAACAGCCTCCCATGATGGCCGGGTTCAGGAGTTGCCCATCTCCCCTCCCTCAAATGACAGATACAGTGCTGAAGCAGGCTTCGCCCCTCCACCCCATCCCCTGCCTGGGGCCAGCTTCTCCTGGCTCACCTTCAACCCAGCCCAGGGCCACAGGTGCCTGACCTTTCTACCCAATGAGCACAAAGTGGTGACCAAGAGGACGTCCTCTGCATACCACGACGGCCGCTTTGACATCAGCCAGTGGATGGCGGAGCAGGAGTTCAGTGAAGGCTGCCACTATTGGGACGTGGATACGTCAGCGAGCGTGGGCTGGGCTGTCGGGGTTTCCTACCCCAGCATTGGCCGCAGAGATCAGCTGGGTCGCACAGCCAACTCCTGGTGCCTGGAGTGGAGCAGGGACAAGCTGTGCTACTGGCACGATAACATAGGGGTGTTTATCAAACATGGCTGCCCCAGTATCGTTAGACTGGCTCTGGATGTGACAAATGGGACCTTGTCGTTTTATAGCCTGTCTGACAGTCAGACTCTGCTGCATTGTGTGGAGGAGGGATTCACAGAGCCAGTGAGGCCAGTCTTCTGGCTGTTTGGGCTGAAGCTAAACAATgctctgtcctttcctccttGGGTGTCATAAGGTGATGTGAGGATGGGGACAACATAAAGAGTTGTCTGTTTATCAAtgagataaataaaataaaatatttagtaATGAATATATTTAGCACAATATTCCTATTAGATGTCAAAATAAAATGACAAACACCTA
>XM_036940505.1
CATTCATTGACATATTCTCATTACACCTCTCAGCAATGAGCATCAGcctcaagacacacacacacagagacacacacactatatttccctgctttcaaacacacacacagaaagagagagataattaatTAGGTGTTTTTCCATGAATTAGATACATGTATTTGTTCTTTGAGAGGGAAAATCCCGTTTTACTGTATTTTCGGTTTCAATTCAGGCATTACAGCCTACACACCGAACCGCAATGGCGTTACTACTTGAAGAACTTCTTACAGATATAGGAACATATCTCACATGTTCAATATGCCTTGACATTTTCACTGATCCAGTGACTTTAACTTGTGGCCACAGTTATTGCATGACATGTTTAGAGGATTGTCTACGTGGAAGAGCGAAGACGAAGGATTGTCCCGATTGCAGAGGAAAAATTCGACCAGGTTTTAAACTGTATAAAAATGTTACACtttgtaacatcgtggatgttcaTTACTACCATAAACGTTTTGCATCCACTGAAGAATTTACTAAAGGACATGAAATGGAAGCGATGGAGGACCCTGTTGTTATAAATGACACAAGCTCAGAAGTGACAGATGACCGGTTTCCTGATGTAACAGCCTCCCATGATGGCCGGGTTCAGGAGTTGCCCATCTCCCCTCCCTCAAATGACAGATACAGTGCTGAAGCAGGCTTCGCCCCTCCACCCCATCCCCTGCCTGGGGCCAGCTTCTCCTGGCTCACCTTCAACCCAGCCCAGGGCCACAGGTGCCTGACCTTTCTACCCAATGAGCACAAAGTGGTGACCAAGAGGACGTCCTCTGCATACCACGACGGCCGCTTTGACATCAGCCAGTGGATGGCGGAGCAGGAGTTCAGTGAAGGCTGCCACTATTGGGACGTGGATACGTCAGCGAGCGTGGGCTGGGCTGTCGGGGTTTCCTACCCCAGCATTGGCCGCAGAGATCAGCTGGGTCGCACAGCCAACTCCTGGTGCCTGGAGTGGAGCAGGGACAAGCTGTGCTACTGGCACGATAACATAGGGGTGTTTATCAAACATGGCTGCCCCAGTATCGTTAGACTGGCTCTGGATGTGACAAATGGGACCTTGTCGTTTTATAGCCTGTCTGACAGTCAGACTCTGCTGCATTGTGTGGAGGAGGGATTCACAGAGCCAGTGAGGCCAGTCTTCTGGCTGTTTGGGCTGAAGCTAAACAATgctctgtcctttcctccttGGGTGTCATAAGGTGATGTGAGGATGGGGACAACATAAAGAGTTGTCTGTTTATCAAtgagataaataaaataaaatatttagtaATGAATATATTTAGCACAATATTCCTATTAGATGTCAAAATAAAATGACAAACACCTA

Function

NR:

description
tripartite motif-containing protein 65-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559437.2 False 1456 mRNA 0.46 4 19370118 19372804
XM_021559436.2 False 1468 mRNA 0.46 4 19370118 19372813
XM_036940504.1 False 1465 mRNA 0.46 4 19370118 19372822
XM_036940505.1 True 1375 mRNA 0.46 3 19370118 19372822

Neighbor

gene id symbol gene type direction distance location
LOC110485825 LOC106587236 coding downstream 120 19335163 ~ 19369998 (-)
LOC110485824 LOC106564658 coding downstream 37150 19277856 ~ 19332983 (-)
LOC110485823 LOC106587227 coding downstream 104558 19258659 ~ 19265560 (-)
LOC110485822 LOC106587218 coding downstream 114744 19251828 ~ 19255374 (-)
stx8 LOC106587090 coding downstream 752261 18569500 ~ 18617857 (-)
LOC110485827 LOC106564656 coding upstream 6586 19379408 ~ 19387327 (-)
LOC110485829 NA coding upstream 17301 19388990 ~ 19392179 (-)
suz12b LOC106587302 coding upstream 23387 19396209 ~ 19409561 (-)
LOC110485834 NA coding upstream 97596 19470418 ~ 19473351 (-)
LOC110485835 LOC106587336 coding upstream 122870 19495692 ~ 19584664 (-)
G1151830 NA non-coding downstream 92643 19277219 ~ 19277475 (-)
G1151825 NA non-coding downstream 98947 19270953 ~ 19271171 (-)
G1151766 NA non-coding downstream 113603 19256117 ~ 19256515 (-)
G1151822 NA non-coding downstream 118568 19251211 ~ 19251550 (-)
G1151821 NA non-coding downstream 119579 19245067 ~ 19250539 (-)
G1151888 NA non-coding upstream 2740 19375562 ~ 19376132 (-)
G1151879 NA non-coding upstream 55332 19428154 ~ 19432673 (-)
G1151911 NA non-coding upstream 105456 19478278 ~ 19478501 (-)
G1151978 NA non-coding upstream 201778 19574600 ~ 19579832 (-)
G1151983 LOC100194703 non-coding upstream 218870 19591692 ~ 19592008 (-)
G1151820 NA other downstream 127044 19242845 ~ 19243074 (-)
G1151819 LOC106587198 other downstream 127639 19241913 ~ 19242479 (-)
G1151033 NA other downstream 516741 18852227 ~ 18853377 (-)
G1150846 NA other downstream 814045 18555781 ~ 18556073 (-)
G1151940 LOC108272819 other upstream 282952 19655774 ~ 19656885 (-)
G1152298 NA other upstream 779611 20152433 ~ 20156750 (-)
G1152720 NA other upstream 1130688 20503510 ~ 20503766 (-)

Expression

LOC110487518(rn135) Expression in all Baseline Samples

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LOC110487518(rn135) Expression in each Bioproject

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LOC110487518(rn135) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network