XLOC_030218 (surf1)


Basic Information

Item Value
gene id XLOC_030218
gene name surf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33281105 ~ 33283718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059091
GCGCATGTGCAGGATGTCTCAGAATCCCCGGAAATGGTTACATTGAAAACATTCCCCTGAAAGCAGAAGGCATGTTATGTAGTCGACCTGTTTTGAAAATTTCAGTGTTTGGGTTACAGCTATTTAGGCTAACATGAGCAGTTTTAGATTAATGCTGATGATCTCTAACCAGACATTTAAGATTCTTCGATGCAGTGCTCTCTTTTCACCAAGGAGGACTCTGTTTGTGACACGACAGAGTTTATTCAGACGTCAGGATGCTCCAGTGCTCCGGTATAACCTGGCCAGGTTTAGTCAACAATCAACTTCCACTGTCGAAGGAACAAAGAAAGGAGAAGACACCTTTCTGAAGTGGTTTCTCTTGTTGATACCCGTCACCACCTTTTGTCTTGGAACATGGCagGTGAAACGTAGAAAGTGGAAGTTGGAGCTGATCAGTGAACTTCAGAGTCTGACGACTTCAGTGCCAATCCCACTGCCTGTAGATACTATGGAAATCAAGCAGCTGGAGTACAGGCGTGTGAAGGTCCGTGGACATTTTGATCACTCTAAGGAGCTGTATATTTTGCCCCGTTCCCCTGTGGACCCTGAGAGAGAGGCTCGAGAGGCAGGGAGGATATCCTCCAGTGGTGAAAGTGGAGCAAATGTTATTACACCCTTTTTCTGCACTGATCTGGGGATCACTATCTTGGTGAACAGAGGTTATGTACCCAAAAACAAGATCAAACCAGAAACCAGGACGAAAGGACAGgtGATTGAGGATGTGGATCTTGTTGGTGTTGTGCGTTTAACTGAACAACGGAAACCATTTGTCCCTGAAAACAATGTGGAGGCAAACAGATGGCACTATCGTGACCTGGAGGCCATGGCTAAGGTCACTGGTGCCGAAGAGATCTTCATTGATGCTGTGCTTGatagCACAGTACCTGGTGGGCCAATAGGAGGGCAGACAAGAGTGACCTTGAGGAATGAACACCTGCAATACGTCATCACATGGTATGGACTGTGTGCTGCTACTTCCTACATGTGGTATGCAAAATTCATCAAGCGTATTGCTTTATGAAAAATATTCAGGATTTTGCCCTTTTtgaatgctgtaaaataaaaactattttatgttaaacttaa
>TCONS_00059092
GAAAGCAGAAGGCATGTTATGTAGTCGACCTGTTTTGAAAATTTCAGTGTTTGGGTTACAGCTATTTAGGCTAACATGAGCAGTTTTAGATTAATGCTGATGATCTCTAACCAGACATTTAAGATTCTTCGATGCAGTGCTCTCTTTTCACCAAGGAGGACTCTGTTTGTGACACGACAGAGTTTATTCAGACGTCAGGATGCTCCAGTGCTCCGGTATAACCTGGCCAGGTTTAGTCAACAATCAACTTCCACTGTCGAAGGAACAAAGAAAGGAGAAGACACCTTTCTGAAGTGGTTTCTCTTGTTGATACCCGTCACCACCTTTTGTCTTGGAACATGGCagGTGAAACGTAGAAAGTGGAAGTTGGAGCTGATCAGTGAACTTCAGAGTCTGACGACTTCAGTGCCAATCCCACTGCCTGTAGATACTATGGAAATCAAGCAGCTGGAGTACAGGCGTGTGAAGGTCCGTGGACATTTTGATCACTCTAAGGAGCTGTATATTTTGCCCCGTTCCCCTGTGGACCCTGAGAGAGAGGCTCGAGAGGCAGGGAGGATATCCTCCAGTGGTGAAAGTGGAGCAAATGTTATTACACCCTTTTTCTGCACTGATCTGGGGTACAAACACACACTATTAGAATTTTACTTGGATTATGCATATACTTGATTTGCAACtcactgcagcacatttttaGGATCACTATCTTGGTGAACAGAGGTTATGTACCCAAAAACAAGATCAAACCAGAAACCAGGACGAAAGGACAGGTAATATAGtgcttttcttaatttatttttagatcaAATCTAGGCGTA
>TCONS_00061734
GAAAGCAGAAGGCATGTTATGTAGTCGACCTGTTTTGAAAATTTCAGTGTTTGGGTTACAGCTATTTAGGCTAACATGAGCAGTTTTAGATTAATGCTGATGATCTCTAACCAGACATTTAAGATTCTTCGATGCAGTGCTCTCTTTTCACCAAGGAGGACTCTGTTTGTGACACGACAGAGTTTATTCAGACGTCAGGATGCTCCAGTGCTCCGGTATAACCTGGCCAGGTTTAGTCAACAATCAACTTCCACTGTCGAAGGAACAAAGAAAGGAGAAGACACCTTTCTGAAGTGGTTTCTCTTGTTGATACCCGTCACCACCTTTTGTCTTGGAACATGGCagGTGAAACGTAGAAAGTGGAAGTTGGAGCTGATCAGTGAACTTCAGAGTCTGACGACTTCAGTGCCAATCCCACTGCCTGTAGATACTATGGAAATCAAGCAGCTGGAGTACAGGCGTGTGAAGGTCCGTGGACATTTTGATCACTCTAAGGAGCTGTATATTTTGCCCCGTTCCCCTGTGGACCCTGAGAGAGAGGCTCGAGAGGCAGGGAGGATATCCTCCAGTGGTGAAAGTGGAGCAAATGTTATTACACCCTTTTTCTGCACTGATCTGGGGATCACTATCTTGGTGAACAGAGGTTATGTACCCAAAAACAAGATCAAACCAGAAACCAGGACGAAAGGACAGGTAATATAGtgcttttcttaatttatttttagatcaAATCTAGGCGTAAATATtgccaattaattttttttctttgttagtCCAAACT
>TCONS_00059093
GTGAAACGTAGAAAGTGGAAGTTGGAGCTGATCAGTGAACTTCAGAGTCTGACGACTTCAGTGCCAATCCCACTGCCTGTAGATACTATGGAAATCAAGCAGCTGGAGTACAGGCGTGTGAAGGTCCGTGGACATTTTGATCACTCTAAGGAGCTGTATATTTTGCCCCGTTCCCCTGTGGACCCTGAGAGAGAGGCTCGAGAGGCAGGGAGGATATCCTCCAGTGGTGAAAGTGGAGCAAATGTTATTACACCCTTTTTCTGCACTGATCTGGGGATCACTATCTTGGTGAACAGAGGTTATGTACCCAAAAACAAGATCAAACCAGAAACCAGGACGAAAGGACAGGTAATATAGtgcttttcttaatttatttttagatcaAATCTAGGCGTAAATATtgccaattaattttttttctttgttagtCCAAACT

Function

symbol description
surf1 Enables cytochrome-c oxidase activity. Acts upstream of or within embryonic organ development and spinal cord motor neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K; Leigh disease; and cytochrome-c oxidase deficiency disease. Orthologous to human SURF1 (SURF1 cytochrome c oxidase assembly factor).

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0048568 embryonic organ development biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041108-2 Enables cytochrome-c oxidase activity. Acts upstream of or within embryonic organ development and spinal cord motor neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K; Leigh disease; and cytochrome-c oxidase deficiency disease. Orthologous to human SURF1 (SURF1 cytochrome c oxidase assembly factor).

Ensembl:

ensembl_id ENSDARG00000003592

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059091 False 1128 mRNA 0.45 9 33281105 33283718
TCONS_00059092 False 818 lncRNA 0.43 5 33281163 33282835
TCONS_00061734 False 781 lncRNA 0.43 6 33281163 33282875
TCONS_00059093 True 436 processed_transcript 0.43 3 33282261 33282875

Neighbor

gene id symbol gene type direction distance location
XLOC_030217 npffr2b coding upstream 176739 33067283 ~ 33104366 (+)
XLOC_030216 CR855258.1 coding upstream 287214 32993786 ~ 32993891 (+)
XLOC_030215 lmo4a coding upstream 319082 32924669 ~ 32962023 (+)
XLOC_030214 ccn1l1 coding upstream 360956 32914321 ~ 32920149 (+)
XLOC_030213 CR925757.2 coding upstream 394507 32886472 ~ 32886598 (+)
XLOC_030219 med22 coding downstream 3893 33287611 ~ 33294747 (+)
XLOC_030220 usp20 coding downstream 17287 33301005 ~ 33330923 (+)
XLOC_030221 NA coding downstream 48731 33332449 ~ 33338469 (+)
XLOC_030222 ptges coding downstream 56044 33339762 ~ 33347993 (+)
XLOC_030223 si:dkey-238j22.1 coding downstream 205142 33488860 ~ 33491935 (+)
XLOC_030212 CR925757.1 non-coding upstream 395774 32885205 ~ 32885331 (+)
XLOC_030208 CR376857.1 non-coding upstream 643340 32637648 ~ 32637765 (+)
XLOC_030206 NA non-coding upstream 913624 32358880 ~ 32367481 (+)
XLOC_030228 NA non-coding downstream 651901 33935619 ~ 33937420 (+)
XLOC_030229 NA non-coding downstream 1009543 34293261 ~ 34295073 (+)
XLOC_030234 NA non-coding downstream 1359729 34643447 ~ 34797351 (+)
XLOC_030235 NA non-coding downstream 1437419 34721137 ~ 34731442 (+)

Expression


Co-expression Network