cdc6 (LOC106587717)


Basic Information

Item Value
gene id cdc6
gene name LOC106587717
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 20455403 ~ 20460142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557094.2
CTTAGCTGCGGGAAGTCCAGCTGATTGGGGGAGGAGTTGTGGAGACATTTGGCGCAAGTTTTGTTTCATAAGTCAGTCAGACCAGAGCGCGCCAGAGACCACACGAAATCCACCTAGACGACTAGCCGAATACTATTTAATCAAGAACTGAAATAAGTCTTTTGAAACCGGTCTGGACGCTAAAGTGCTCACAGGGAAGATGCCCAGCACACGTTCCCAGGCTCAGCCTATCCTCCAGTTCCCCAGACGCAAGTCCTCTGGGGTTCACTCAAAAAGCACCCCCTCCAAGAGCACATCCCAACTGAAGGAGACCCAGTCCCTCTGCTCCGTGGGGGCTTCTAAACCGCAGTCCCTTCCAGAGAGGGCCCAGCTAACGCCCCTCTCACATGGGCCCGTGGCCCTCAAAGGCATAACTTTGTGCCCAAGAATACCCCTCAGCCCTCGCAAACGCACAGGAGATGAAAATGGCTGTAACCTCAGTGCCACCCTGCTGGGCTCTCCTCCCAAACAGCCCTGCCTTAACCTGGCCTCCCCCCGCAAGCTGGGCTTTGAGAACTCCCCCCTTCTATCCCCGAGGAGACTACTGACCCCCCTCTCCCCAACCTCCCGCCCCAGGGCCTCCCCCAGCAGACTGCATGAGACCCCCAGTGGGAGCCCATGTCCCCGATCAGAGAAGACGCCTGGGGTCCGCCTCTTTGCTGAAAAGTCTAAGTTCCACAGTGTGAAGCAGGCCCTCCACACTGCTGTCCCAGAGCGCCTGCTATCCCGGGAGGACGAGAGGTCCTCCATCCGCTCCTTCCTGGAGGACAAGGCCCTGAAGGCCAGCCCGGCCAGCCTCTACATCTCTGGAGCCCCTGGCACCGGCAAGACGGCTTGCCTCAACTGTGTGTTGCAGGAGATGAAGGATGAGCTGAAGGAGATTCAGACAGTGGTGTTGAACTGTATGGCTCTGCGTAGCTCCCACGCCATCTTCCCCTTGCTGGCAGAGAAGCTGGGGGCCTCCGGGGGCCACACCGACACCAAGCTGCAGAAACTGCTGACCAGCACAGGGCCCACTGTTCTTCTAGTCCTGGATGAAATGGACCAGTTGGACAGCAAGGCACAAGACGTTCTCTACACCATCTTTGAGTGGCCCTACCTGCCCAAGTCCCGCCTCTGTCTCATTGGTATCGCCAACGCTCTGGACCTGACCGACAGGATCCTCCCCCGGCTGCAGGCCCTGCCTCGCTGTCGCCCCCAGCTGTTACACTTCCCACCCTACAGCCGCCAGGAGCTCGCCGCCATCGTGCAGGACCGACTCGCACAGGTGTCCGGAGAAGGGTTACTGGACGTGTCGGCCGTGCAGTTTTGTGCCAGGAAGGTGTCTGCTGTGTCGGGAGACGCACGCAAAGCTCTGGATATCTGCCGGAGAGCTGTAGAGCTTGTGGAATCTGACGACCGAAAGAAGGCCGCAGAAACGACAGCGTCTCGTGTGAGCGTGCCCCAGGTGGCCAGGGTGCTGTCGGAGGTGTACGGGGACCGCATGTCCTCCTCCGAGGGAGAGAGCTTCCCCCTCCAGCAGAAACTACTGGTGTGCTGTCTGCTACTGCTCACCCGCAACGGCAAGAACAAAGAGATCCCACTGGGCAAGCTCCACGAGGTGTACAGCCGCCTGTGTGCCAAGAGACAGGTGGGTGGTGTGGGCCAGGGCGAGTGCCTCTCCCTCTGCGGTCTGCTGGAGAGCCGGGGCATCTTTGCCCTGAAAAAAGCCAAGGAGGCTCGCCTCACCAAGGTTTCTCTGAAGATTGAGGAGAGGGACGTGGAGAATGCTCTGAAGGATCGCACCCTGCTGGGCAGCATCCTGACCTCTGGCCTACCATGACCTCTCACCCCAATGATATCAACTGACCCAGATTTATatttgtgatttatttattttcattttgggggggattccttttttgggggggggcggAACAATGGGGAAATGCAGCGATTTGTTACATTTTTATTAACAGATGATGAACATGGACTAGAAACATTTCAAATGGTCAGCCAAACTGACTAGCTGCTTTTAACTTGTTTAAAATgctcatttttggggggggggtgaaaaccGTATGTACATTTATGTTGTAATAAATGAATGTACAAACTTTTTAAACA
>XM_021557093.2
ATCAGTCAAGTTTAACTAGCTAGTCAGATACAAAAAAACAGTTTGTCGAAAACCGCAATAAATATATTTCCTGTTTTCTTTGATTGTGGTATTTTACGACATTTCAGTGTTTTTAATCATATTTGTACTGTTGGCGCCACAAATGAGTACACGTATAGTTGTCGCCATTGAGTCTGCAGATACAGTAGTTACTGAGAATTCACACCATTCTGATGGCCCCGGAAGATGGCAAGTTGTTTGTTGCATTGTCAGTATACAATCGAACATTCGGGCTATAACCTTTTGTAATGTTGATTTACAACAGTGCAACAACGGCACAAAGATCGCATACTCTTCTAAATCGTGGGACTCATGCTTAGCAGTTATAACAGTAACTTGCGTGGAAAATACCGGAACTACTTCGATCAGGTCTTTTGAAACCGGTCTGGACGCTAAAGTGCTCACAGGGAAGATGCCCAGCACACGTTCCCAGGCTCAGCCTATCCTCCAGTTCCCCAGACGCAAGTCCTCTGGGGTTCACTCAAAAAGCACCCCCTCCAAGAGCACATCCCAACTGAAGGAGACCCAGTCCCTCTGCTCCGTGGGGGCTTCTAAACCGCAGTCCCTTCCAGAGAGGGCCCAGCTAACGCCCCTCTCACATGGGCCCGTGGCCCTCAAAGGCATAACTTTGTGCCCAAGAATACCCCTCAGCCCTCGCAAACGCACAGGAGATGAAAATGGCTGTAACCTCAGTGCCACCCTGCTGGGCTCTCCTCCCAAACAGCCCTGCCTTAACCTGGCCTCCCCCCGCAAGCTGGGCTTTGAGAACTCCCCCCTTCTATCCCCGAGGAGACTACTGACCCCCCTCTCCCCAACCTCCCGCCCCAGGGCCTCCCCCAGCAGACTGCATGAGACCCCCAGTGGGAGCCCATGTCCCCGATCAGAGAAGACGCCTGGGGTCCGCCTCTTTGCTGAAAAGTCTAAGTTCCACAGTGTGAAGCAGGCCCTCCACACTGCTGTCCCAGAGCGCCTGCTATCCCGGGAGGACGAGAGGTCCTCCATCCGCTCCTTCCTGGAGGACAAGGCCCTGAAGGCCAGCCCGGCCAGCCTCTACATCTCTGGAGCCCCTGGCACCGGCAAGACGGCTTGCCTCAACTGTGTGTTGCAGGAGATGAAGGATGAGCTGAAGGAGATTCAGACAGTGGTGTTGAACTGTATGGCTCTGCGTAGCTCCCACGCCATCTTCCCCTTGCTGGCAGAGAAGCTGGGGGCCTCCGGGGGCCACACCGACACCAAGCTGCAGAAACTGCTGACCAGCACAGGGCCCACTGTTCTTCTAGTCCTGGATGAAATGGACCAGTTGGACAGCAAGGCACAAGACGTTCTCTACACCATCTTTGAGTGGCCCTACCTGCCCAAGTCCCGCCTCTGTCTCATTGGTATCGCCAACGCTCTGGACCTGACCGACAGGATCCTCCCCCGGCTGCAGGCCCTGCCTCGCTGTCGCCCCCAGCTGTTACACTTCCCACCCTACAGCCGCCAGGAGCTCGCCGCCATCGTGCAGGACCGACTCGCACAGGTGTCCGGAGAAGGGTTACTGGACGTGTCGGCCGTGCAGTTTTGTGCCAGGAAGGTGTCTGCTGTGTCGGGAGACGCACGCAAAGCTCTGGATATCTGCCGGAGAGCTGTAGAGCTTGTGGAATCTGACGACCGAAAGAAGGCCGCAGAAACGACAGCGTCTCGTGTGAGCGTGCCCCAGGTGGCCAGGGTGCTGTCGGAGGTGTACGGGGACCGCATGTCCTCCTCCGAGGGAGAGAGCTTCCCCCTCCAGCAGAAACTACTGGTGTGCTGTCTGCTACTGCTCACCCGCAACGGCAAGAACAAAGAGATCCCACTGGGCAAGCTCCACGAGGTGTACAGCCGCCTGTGTGCCAAGAGACAGGTGGGTGGTGTGGGCCAGGGCGAGTGCCTCTCCCTCTGCGGTCTGCTGGAGAGCCGGGGCATCTTTGCCCTGAAAAAAGCCAAGGAGGCTCGCCTCACCAAGGTTTCTCTGAAGATTGAGGAGAGGGACGTGGAGAATGCTCTGAAGGATCGCACCCTGCTGGGCAGCATCCTGACCTCTGGCCTACCATGACCTCTCACCCCAATGATATCAACTGACCCAGATTTATatttgtgatttatttattttcattttgggggggattccttttttgggggggggcggAACAATGGGGAAATGCAGCGATTTGTTACATTTTTATTAACAGATGATGAACATGGACTAGAAACATTTCAAATGGTCAGCCAAACTGACTAGCTGCTTTTAACTTGTTTAAAATgctcatttttggggggggggtgaaaaccGTATGTACATTTATGTTGTAATAAATGAATGTACAAACTTTTTAAACA

Function

NR:

description
cell division control protein 6 homolog isoform X1

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K02213 CDC6; cell division control protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557094.2 False 2145 mRNA 0.57 9 20455403 20460142
XM_021557093.2 True 2397 mRNA 0.54 9 20455715 20460142
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485890 LOC106587723 coding upstream 347 20442132 ~ 20455056 (+)
LOC110485891 LOC106564749 coding upstream 15725 20437453 ~ 20439678 (+)
LOC110485887 LOC106587691 coding upstream 18180 20417015 ~ 20437223 (+)
LOC110485885 LOC106587662 coding upstream 46279 20388891 ~ 20409124 (+)
si:dkey-23f9.4 LOC106587578 coding upstream 160444 20287730 ~ 20294959 (+)
LOC110485893 LOC106587732 coding downstream 45978 20506120 ~ 20549922 (+)
LOC110485895 k1c20 coding downstream 97854 20557996 ~ 20565671 (+)
LOC110487521 NA coding downstream 119341 20579483 ~ 20584768 (+)
k13 k13 coding downstream 132322 20592464 ~ 20621018 (+)
LOC118936336 LOC106587783 coding downstream 163104 20623246 ~ 20627422 (+)
G1152434 LOC106587647 non-coding upstream 69203 20384369 ~ 20386200 (+)
G1152436 NA non-coding upstream 72707 20382453 ~ 20382696 (+)
G1152433 NA non-coding upstream 75621 20374599 ~ 20379782 (+)
G1152432 NA non-coding upstream 81222 20373975 ~ 20374181 (+)
G1152426 NA non-coding upstream 91810 20361193 ~ 20363593 (+)
G1152471 NA non-coding downstream 1885 20462027 ~ 20462236 (+)
G1152472 NA non-coding downstream 3065 20463207 ~ 20463495 (+)
G1152473 NA non-coding downstream 4275 20464417 ~ 20464859 (+)
G1152480 NA non-coding downstream 19336 20479478 ~ 20480194 (+)
G1152481 NA non-coding downstream 39917 20500059 ~ 20502863 (+)
G1152190 LOC106587516 other upstream 248729 20193594 ~ 20206674 (+)
G1152244 LOC106564734 other upstream 263510 20191158 ~ 20191893 (+)
LOC110485866 LOC106587513 other upstream 276583 20177543 ~ 20183351 (+)
LOC110485904 LOC106564952 other downstream 402830 20860370 ~ 20880503 (+)
LOC110485920 LOC106588056 other downstream 598986 21057745 ~ 21068780 (+)
G1152985 LOC106588089 other downstream 695352 21155494 ~ 21156878 (+)
LOC110485931 LOC106564932 other downstream 751570 21208787 ~ 21214615 (+)
G1153651 LOC106576875 other downstream 1147350 21607492 ~ 21608829 (+)

Expression

cdc6(LOC106587717) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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cdc6(LOC106587717) Expression in each Bioproject

Bar chart with 21 bars.
cdc6(LOC106587717) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network