LOC110485895 (k1c20)


Basic Information

Item Value
gene id LOC110485895
gene name k1c20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 20557996 ~ 20565671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557107.2
CTCGAGGACACGAAGGGGGTTATTTTACCTGACGCCTCAACTACGAAGAACGCACTTTAACCTCCCAGGACGCATCGCCAGACTATCTCTCGCCATGTCCATTGTAGCCAGTCGCAGTAGTAGCCTTAGATACAGCTCAGGTAGCGGTGTCGTTTCGAGTGGCCTCAGTTCGCCTGGTGGGATGCAGTCTTCCAGCGGTTTGGGATACGGTAGGTCCCGTATGAGCGTGTCCTCTGTTGGGAGCAGTCGCTCGCCGAGTGTATATGGAGGTGCCGGGGGATACGGCACCCGTATCTCTCAATCTTCTTTCTCTACGGACGGGCCAGGTCAGATCACTATCGGTGCCAACGAGAAGCATACCATGCAGAATCTGAACGATCGTTTGGCCCGCTACCTGGAAAAGGTGCGCTCTCTAGAGGCAGCCAATAGCAAGTTGGAGTTGCAGATCAAAGAGTTCTACGAGATGAGATCACCGACTCACAAGAAGGACCTCAGTGGGTTCTATGCCACCATCACAGACATCCGCAACAAGATCCATGCCAGGTCTGTGGAGAACGCTCAGATGATCCTGCGGGTGGATAATGCCAGAGTTGCAGCTGATGACTTCAAGATGAAGTTCGAGACGGAGGTTAACATGCGTATGACCTTGGAAGGGGATGTTGCTCGTCTGAGAGGAGTGCTGGACAGCTTTATGCTCGCCAGAGGAGACCTGGACATGCAGATTGAGGGGCTGAAGGAGGAGCTGGTCTACCTCAGGAAGAACCATGAGGAGGAGATgcatttgataaggacacagcaGTGTGGTGCTGTGAATGTGGAGATGGACTGTGCTTCCTCAGTGGACATGAGCAAGGTGCTGGAGGAGATGAGGACCCAGTATGAGGGCATGGTGGCGAAGAACCAGAGAGATGCTGCCAAGTGGTTTGAGAGCAAGgtggagGTGCTTCAGAGCCAGATCACCACCAGCACCACAGAGGTGAAGACCTCTCAGTCTCAGGTGACCGACCTGAAGAGGACCTTCCAGAGCCTGGAGATTGAACTGCATGGCCTGCTCACTCAGAAGGGGTACCTGGAGCAGAGCGTCGCTGATATAAACGGCCGCCACGGCTCCCAGCTGAGCCAGCTGCAGGTTTGTATCAAcagcatggaggaggagctgCAGCAGCTCAACGTCAGCATCCAGCAGCAGGCCTCCGAGTACCAGATCCTGCTGGACATCAAGATGAGGCTGGAGATGGAGATCGCTGAGTACAGGAGGCTGCTGGATGGAGAGGGATTCAGTAAGCATGTGGAGACCAGACAGGAGGTCAGGAAAGTGATCGTGGTCGAGAAGATCCAGGAAGTACAACAAGTCCAGGAAGTGGTGGAAGAGTATAACTCCCACATGCAGAAGCGGGTGAGGGTGATCGTGGAGGAGATGGTGGATGGGAAGGTGGTGTCCACCTCAGTTGATGAGAAGGTCCAGGATTTGAACTAACTGAGAAGGCCAGATAGTTCTGGAATCTGGTGAAGCGGTAACGGACCAAACATACCCCTGGACCACACATACCCCTGGACCACACATACCCCTGGACCACACATACCCCTGGACCACACATACCCCTGGACCACACATATCCCTGGACCACACATATCCCTGGACCACACATATCCCTGGTGACGGGTGTTCAATccccatctatatatatataaatcatgTCATGGTTGCATACTGTAATATTTCCCTTTAGACAGGATTGCATCAGCTGAATGATAACTGATATAATTTACTCGTGTTACCTTATAACTCTTATATGTCTCGATCATGTGGCAACTTGAATATTATTTCTCGTGTGCTTTTGTTCCATTTGTGGCCGCCAGGTGACGTCTCTCATTTTAACATCTTTGGCCAGTGCAATTAAAAGTGAAAATGATTGTGTGAAAAGTGGAAACAGATTATTCCAGTTACATAAGTGACATCAGGGAAAATATGACTCATGTCATCAGCCATTATAAAGCTATTTTAGCTCCATTATATCCTCCCAGGACCACAAGCCGTGTATGTTCTCTGGACTCTATGACAAGGTTAAAGTTCATGTTCTGTAGGCCTACGACACTGACACTACATGTTACATTTGGCTGTTGATTAAATATAGATGTCAATGCATTTCAGGGCGCTAATATCATAATTGAGGGTGCGTTGTTGTCCTCTAAAAAGCTGAAAAGAAACACCTTTAcagcagtggcggtcggtgccgtttaagatgagggaggacgacaATTGTTTTTAGAAgcttggccttatttctattgcaCCATATTGGATGagtgtcattcatattccattcacccagttcaatgtaacaatGACAGGTTTAGGCTTCCTCATGATTCTCACATTTTCCCTATAAACGTCATGAGGTTTacaaagtttacaacgtaggtgcacgaGAGAAAATATTTGAGGGTACAGATAATGACACATTTAACTTGCACACTTTTGCCTGcctctagctgatctagggtgtaatgaTTAgaccaacagttgcaaacaagcgTTTCTACTGgccaaattcaggtatgtttatccccgttttgttcgcTTCCGCTTAAGAAAGGTTTTTCAACCGAATCGGCAGAATgattcccgagtggcgcagcggtctaaggaacagcatcacagtgctagctgtaccACTAGAGATTCCTTACCTgatgggtttgagtccaggctctgtcgcagccggctacAAACGGGAGACCCAtgtggcggcgcacaattggccaagcgtcgtccgggttaggggagggtttggccggcagggatgtccttatcccatcgcgcactagcgactcctgtggcgggctgggcgtagtgcacgctgacacagtcgccaggtgtacagtgtttcctctgacacattggtgtggctggcttctgggttaagtgggcattgtgtcaagcaACAGTGCTGTtttgttgggttgtgtttcggaggactctCGACATTTGTGTCTCTTGAGTCCGTACGgcagttgcagcaatgagacaacactgtatgtaacaattggatatcatgaaattggggcgAAAACAGGGTGAAAAAAATGTTGTAATAA

Function

NR:

description
keratin, type I cytoskeletal 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557107.2 True 3099 mRNA 0.49 9 20557996 20565671

Neighbor

gene id symbol gene type direction distance location
LOC110485893 LOC106587732 coding upstream 8074 20506120 ~ 20549922 (+)
cdc6 LOC106587717 coding upstream 97854 20455403 ~ 20460142 (+)
LOC110485890 LOC106587723 coding upstream 102940 20442132 ~ 20455056 (+)
LOC110485891 LOC106564749 coding upstream 118318 20437453 ~ 20439678 (+)
LOC110485887 LOC106587691 coding upstream 120773 20417015 ~ 20437223 (+)
LOC110487521 NA coding downstream 13812 20579483 ~ 20584768 (+)
k13 k13 coding downstream 26793 20592464 ~ 20621018 (+)
LOC118936336 LOC106587783 coding downstream 57575 20623246 ~ 20627422 (+)
LOC110485896 LOC106587793 coding downstream 90887 20656558 ~ 20661638 (+)
LOC118936333 LOC106587793 coding downstream 109052 20674723 ~ 20679621 (+)
G1152497 NA non-coding upstream 52940 20504796 ~ 20505056 (+)
G1152481 NA non-coding upstream 55133 20500059 ~ 20502863 (+)
G1152480 NA non-coding upstream 77802 20479478 ~ 20480194 (+)
G1152473 NA non-coding upstream 93137 20464417 ~ 20464859 (+)
G1152529 NA non-coding downstream 1278 20566949 ~ 20567176 (+)
G1152546 NA non-coding downstream 29423 20595094 ~ 20599377 (+)
G1152913 LOC106587865 non-coding downstream 259656 20825327 ~ 20826960 (+)
LOC110485904 LOC106564952 non-coding downstream 313947 20860370 ~ 20880503 (+)
G1152944 NA non-coding downstream 353001 20918672 ~ 20920491 (+)
LOC110485885 LOC106587662 other upstream 167550 20388891 ~ 20409124 (+)
G1152190 LOC106587516 other upstream 351322 20193594 ~ 20206674 (+)
G1152244 LOC106564734 other upstream 366103 20191158 ~ 20191893 (+)
LOC110485866 LOC106587513 other upstream 379176 20177543 ~ 20183351 (+)
LOC110485920 LOC106588056 other downstream 493457 21057745 ~ 21068780 (+)
G1152985 LOC106588089 other downstream 589823 21155494 ~ 21156878 (+)
LOC110485931 LOC106564932 other downstream 646041 21208787 ~ 21214615 (+)
G1153651 LOC106576875 other downstream 1041821 21607492 ~ 21608829 (+)

Expression

LOC110485895(k1c20) Expression in all Baseline Samples

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LOC110485895(k1c20) Expression in each Bioproject

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LOC110485895(k1c20) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network