XLOC_030229


Basic Information

Item Value
gene id XLOC_030229
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 34293261 ~ 34295073 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061442
ctttttaTTGTCATACACAGttacatgtgtttgttttctCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTTTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACTGGAACGGTCTCAACAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCAGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacattaatatatttctcCCTTTATATTACCATGGATAAacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTctATCCTTCTGGTACAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATgccATCACACAGTCAGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAATTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATGGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGA
>TCONS_00061441
ctttttaTTGTCATACACAGttacatgtgtttgttttctCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTTTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACTGGAACGGTCTCAACAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCAGACTCATTAGAAAGAAGTGTGCACTCATTACAgTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTctATCCTTCTGGTACAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGTAAGAATGTTTTTACATCATAAACTGAATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatgtcaggaggattttttttttgctaggccATCACACAGTCAGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTGGTTGTCTCTGATAAAGGAGATGCGACCATCACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATGGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGA
>TCONS_00061440
ctttttaTTGTCATACACAGttacatgtgtttgttttctCATTGTGCTGTATGAATTTCTCTCTTAGGAGATGGAAGTCGAGGAACAAATTACAGTCACTCTTAACACTTCTACACCGCGTTTTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGTTGGAGATCTGATAGCCTTAGTCAAACTGGAACGGTCTCAACAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCAGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacattaatatatttctcCCTTTATATTACCATGGATAAacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTctATCCTTCTGGTACAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGTAAGAATgccATCACACAGTCAGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTGGTTGTCTCTGATAAAGGAGATGCGACCATCACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttgaTGGACATTGAATTTTCCAAGCTCACAGATGGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGA
>TCONS_00061737
AACGGTCTCAACAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTTGGCAAAtttcaaatatattatattgCAAGCAACACCCCAGACTCATTAGAAAGAAGTGTGCACTCATTACAggtaaaacattaatatatttctcCCTTTATATTACCATGGATAAacgtaaacatttaaataaataaaatgttttggcaTTTCTTAGTGTCCTTTAACAGATTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTCAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTCCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttctatattaaaataaattctaaatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGAAGTACCACTGTTTAGTCCATTTTTTATGTTTGTCAATGTTTGTGTATAAGCAATTTATgcaactgtatttgttttttttacttttttagctATCCTTCTGGTACAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGTAAGAATGTTT
>TCONS_00061738
ccATCACACAGTCAGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTGGTTGTCTCTGATAAAGGAGATGCGACCATCACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTAcacagacatttatttcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATGGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAAAATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGGTATGAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTTGATGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGTATCTTCACTTCAAGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061442 False 1028 lncRNA 0.38 5 34293261 34294841
TCONS_00061441 False 1152 lncRNA 0.38 4 34293261 34294841
TCONS_00061440 False 1121 lncRNA 0.38 4 34293261 34294841
TCONS_00061737 False 734 lncRNA 0.31 1 34293474 34294207
TCONS_00061738 True 753 lncRNA 0.35 1 34294321 34295073

Neighbor

gene id symbol gene type direction distance location
XLOC_030228 NA coding upstream 355841 33935619 ~ 33937420 (+)
XLOC_030227 ttll11 coding upstream 624301 33611951 ~ 33668960 (+)
XLOC_030226 ms4a17c.1 coding upstream 767584 33519943 ~ 33525677 (+)
XLOC_030225 si:dkey-174k12.3 coding upstream 788294 33503108 ~ 33504967 (+)
XLOC_030224 ms4a17c.2 coding upstream 792930 33498253 ~ 33500331 (+)
XLOC_030230 lamc3 coding downstream 112690 34407763 ~ 34542480 (+)
XLOC_030231 aif1l coding downstream 254292 34549365 ~ 34575502 (+)
XLOC_030232 gfm2 coding downstream 283406 34578479 ~ 34600710 (+)
XLOC_030233 enc1 coding downstream 327247 34622320 ~ 34638624 (+)
XLOC_030234 NA coding downstream 348374 34643447 ~ 34797351 (+)
XLOC_030221 NA non-coding upstream 954792 33332449 ~ 33338469 (+)
XLOC_030216 CR855258.1 non-coding upstream 1299370 32993786 ~ 32993891 (+)
XLOC_030213 CR925757.2 non-coding upstream 1406663 32886472 ~ 32886598 (+)
XLOC_030212 CR925757.1 non-coding upstream 1407930 32885205 ~ 32885331 (+)
XLOC_030235 NA non-coding downstream 426064 34721137 ~ 34731442 (+)
XLOC_030236 NA non-coding downstream 533731 34828804 ~ 34837166 (+)
XLOC_030237 BX530075.1 non-coding downstream 625322 34920395 ~ 34921911 (+)
XLOC_030240 CR377210.1 non-coding downstream 825975 35121048 ~ 35127014 (+)

Expression


Co-expression Network