LOC110485944 (LOC106588224)


Basic Information

Item Value
gene id LOC110485944
gene name LOC106588224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 21968146 ~ 21974128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557201.2
CTCTGCTACACACacgttctctcactctctttcagaAGAGCTGCAAGAGGTAGTTATGAGACACACCTTTCTCAGAGATAAGTACAGCAGCCACACAAAGCCTCCTTACTTAATCATTAACGACCTTGGTATGTAAAGAAACCTACAAGGAAATGGGAGGACTAATTTTAGCAGGGGCTCAGAAGGTATCAGACAGAGTTACTCAAAGAAGCAAGGGACAAGCACGTCTTCATATTGGGGAGATCAAGTCAAGAGAAACAAGATGGACCTGCTAATCCAGCAAACGGTGATGCTTTGGCTCTCTGTTGCTCGCACACTCACAACAGCAGAGCTGGTGAAGCTAAGCACTGTTGACTCTGTCATTGTGCCATGTCACCAGCGTGTAACCCTCCGATGTGGCATCACCACATTACAGGAGGGGCTGTCGATCAAACATCTGGCCTGGGTCCGCCAGGACGGCATGCACCTGTGTGACGTTAACGGAACTGGAGTGACCGGGACCCACTCAGGGAGCACACCTAGTACCATGGAGTGTAGTTATACCCCGCAGACACAGCTGACCCTGACTCTGCTGCAGGTACAGCCACTGGAGCGGGGAAAGTACTTGTGCAAGCTACGCTCCAATCACGGAGTAAAGGAGGCCACTACAACGGTGGAGCTGCAAGAGTGCTACAGGGAGGCCCAGCCCAGTGTCAGTGATGAGGGCCCAACCTGCCGCTTCACTGGGGTCTACCCTGATGGAGAGGTGCACTGGTTCCAGGGACCCAACAACGTGACTGGGGACTCTACAATCAACACTAAACAAGTGGAAGATGGAGCGTCATTGACTATAACTAGTTCCCTGAAAAGAAAGACCGTCTCTGGGGAAGGGGCCTACAACTGCTCCCTGTGGATCCCCAGTACCGGAGCCTACCTGACCAGCAGCTTAGTGGTACCAGAGCATAGTAAAGCAAAGGTTGTGTGGCCCAATGCCAGTGGGGCAGGGTCCATTGGTCCTTTGTGGAAACCTTTTCTATTCCTCCTGAGTACTCTCTTCCTGGTGTGATGTCTTGAAAACAAACATTGACAAGCAAGTGGATCATTTAATAAGAATATAGAAGAGCCATTGTGTGAGGTTCCTTTCATGGTCCAAAGGTTTCCTTGGCTGCGTAGAACAAGGAAATGATAACCTGAGGCTGGTAACCTGCTGCAAATCAACCTATTGTGAACGCACCCTTGTTGGTCTGCCAGTGCCCGATGTTAATTAGATTGTTAATTAAAAACAGCAAAtggcagtagaaacaataacaaagcttaCTTCCTTCCCGTTTCGgtgaaaagctgagggatggggccggagaaatgtaaccactctcaaattcatagacagtgcTTTGGATGCATGgcctgaccatccatgatatcaaaataatTAGTTTTAACAATGTTtcgaggctatatagtgttttatTAAATTGGAGTTAAACAAGCTTCTGATGGTGTAAGACAGTTgcactaagctcatgaggcatttgtaagttatattcttcaagaatgaaTGTGTACAtatataaaatttaaaaaatgatgtaACAACtactgattgcccctttaagggcGTGACCTTTTGTAGAAAAGCATTCCTGTTTGCGTTAATCAGAGATCCCCTTACTGTTCGGCGTGCTTTGGGCGGACAGGAGCGGTGGTTTAATTGGGTTGATTTTCTACGTTTGATTGAATGTGAGTTGTGCGAGAAACGTATTGTTAGTAATGATGTCTGTGAGGTGATATTCCTGCTTAGGATGGATGTAAATAAATGGCTGCGTCCTGA
>XM_036940617.1
CTCTGCTACACACacgttctctcactctctttcagaAGAGCTGCAAGAGGTAGTTATGAGACACACCTTTCTCAGAGATAAGTACAGCAGCCACACAAAGCCTCCTTACTTAATCATTAACGACCTTGGTATGTAAAGAAACCTACAAGGAAATGGGAGGACTAATTTTAGCAGGGGCTCAGAAGGTATCAGACAGAGTTACTCAAAGAAGCAAGGGACAAGCACGTCTTCATATTGGGgctgctggttgctgacgggctggctgagggtcaatctcatcctcttcttccaactcactgtcagaTTCCGAAGTGAATTCTTCATCTTCCAAAGTGGAAGACGGtccttccacactagcttctctctctgcaaaaATGATTTCTAAGGCCCTctgccatactgattgattgtgGAGATCAAGTCAAGAGAAACAAGATGGACCTGCTAATCCAGCAAACGGTGATGCTTTGGCTCTCTGTTGCTCGCACACTCACAACAGCAGAGCTGGTGAAGCTAAGCACTGTTGACTCTGTCATTGTGCCATGTCACCAGCGTGTAACCCTCCGATGTGGCATCACCACATTACAGGAGGGGCTGTCGATCAAACATCTGGCCTGGGTCCGCCAGGACGGCATGCACCTGTGTGACGTTAACGGAACTGGAGTGACCGGGACCCACTCAGGGAGCACACCTAGTACCATGGAGTGTAGTTATACCCCGCAGACACAGCTGACCCTGACTCTGCTGCAGGTACAGCCACTGGAGCGGGGAAAGTACTTGTGCAAGCTACGCTCCAATCACGGAGTAAAGGAGGCCACTACAACGGTGGAGCTGCAAGAGTGCTACAGGGAGGCCCAGCCCAGTGTCAGTGATGAGGGCCCAACCTGCCGCTTCACTGGGGTCTACCCTGATGGAGAGGTGCACTGGTTCCAGGGACCCAACAACGTGACTGGGGACTCTACAATCAACACTAAACAAGTGGAAGATGGAGCGTCATTGACTATAACTAGTTCCCTGAAAAGAAAGACCGTCTCTGGGGAAGGGGCCTACAACTGCTCCCTGTGGATCCCCAGTACCGGAGCCTACCTGACCAGCAGCTTAGTGGTACCAGAGCATAGTAAAGCAAAGGTTGTGTGGCCCAATGCCAGTGGGGCAGGGTCCATTGGTCCTTTGTGGAAACCTTTTCTATTCCTCCTGAGTACTCTCTTCCTGGTGTGATGTCTTGAAAACAAACATTGACAAGCAAGTGGATCATTTAATAAGAATATAGAAGAGCCATTGTGTGAGGTTCCTTTCATGGTCCAAAGGTTTCCTTGGCTGCGTAGAACAAGGAAATGATAACCTGAGGCTGGTAACCTGCTGCAAATCAACCTATTGTGAACGCACCCTTGTTGGTCTGCCAGTGCCCGATGTTAATTAGATTGTTAATTAAAAACAGCAAAtggcagtagaaacaataacaaagcttaCTTCCTTCCCGTTTCGgtgaaaagctgagggatggggccggagaaatgtaaccactctcaaattcatagacagtgcTTTGGATGCATGgcctgaccatccatgatatcaaaataatTAGTTTTAACAATGTTtcgaggctatatagtgttttatTAAATTGGAGTTAAACAAGCTTCTGATGGTGTAAGACAGTTgcactaagctcatgaggcatttgtaagttatattcttcaagaatgaaTGTGTACAtatataaaatttaaaaaatgatgtaACAACtactgattgcccctttaagggcGTGACCTTTTGTAGAAAAGCATTCCTGTTTGCGTTAATCAGAGATCCCCTTACTGTTCGGCGTGCTTTGGGCGGACAGGAGCGGTGGTTTAATTGGGTTGATTTTCTACGTTTGATTGAATGTGAGTTGTGCGAGAAACGTATTGTTAGTAATGATGTCTGTGAGGTGATATTCCTGCTTAGGATGGATGTAAATAAATGGCTGCGTCCTGA

Function

NR:

description
uncharacterized protein LOC110485944

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557201.2 False 1810 mRNA 0.47 4 21968146 21974128
XM_036940617.1 True 1983 mRNA 0.47 5 21968146 21974128

Neighbor

gene id symbol gene type direction distance location
LOC118938483 NA coding upstream 406149 21560819 ~ 21561997 (+)
LOC110485938 LOC106564925 coding upstream 478951 21484377 ~ 21489195 (+)
LOC110485937 NA coding upstream 502167 21465211 ~ 21465979 (+)
LOC110485931 LOC106564932 coding upstream 753531 21208787 ~ 21214615 (+)
LOC110485928 pp12c coding upstream 782966 21173895 ~ 21185180 (+)
LOC110485943 LOC106588557 coding downstream 37883 22012011 ~ 22021092 (+)
LOC110485945 LOC105021619 coding downstream 66560 22040688 ~ 22042468 (+)
LOC101268942 NA coding downstream 116845 22090973 ~ 22091293 (+)
LOC110485949 NA coding downstream 119832 22093904 ~ 22102095 (+)
LOC110485951 LOC106588251 coding downstream 150156 22124284 ~ 22153833 (+)
G1153777 NA non-coding upstream 108930 21858880 ~ 21859216 (+)
G1153702 NA non-coding upstream 192442 21711234 ~ 21775704 (+)
G1153730 NA non-coding upstream 199907 21767546 ~ 21768239 (+)
G1153672 NA non-coding upstream 317992 21644913 ~ 21650154 (+)
G1153670 NA non-coding upstream 318498 21643821 ~ 21649648 (+)
G1154161 NA non-coding downstream 49556 22023684 ~ 22023891 (+)
G1154194 NA non-coding downstream 102601 22076729 ~ 22076956 (+)
G1154217 NA non-coding downstream 148327 22122455 ~ 22237759 (+)
G1154263 NA non-coding downstream 242230 22216358 ~ 22216872 (+)
G1153651 LOC106576875 other upstream 359317 21607492 ~ 21608829 (+)
G1152985 LOC106588089 other upstream 811268 21155494 ~ 21156878 (+)
LOC110485920 LOC106588056 other upstream 907346 21057745 ~ 21068780 (+)
LOC110485904 LOC106564952 other upstream 1088609 20860370 ~ 20880503 (+)
G1154234 NA other downstream 184443 22158571 ~ 22159429 (+)
G1154335 NA other downstream 465508 22439636 ~ 22456349 (+)
G1154412 mcoln1 other downstream 537251 22511379 ~ 22511740 (+)
c13h17orf67 LOC106564992 other downstream 632180 22606256 ~ 22610371 (+)
G1155006 LOC100136012 other downstream 984804 22958932 ~ 22959351 (+)

Expression


Co-expression Network