LOC110485947 (LOC106588570)


Basic Information

Item Value
gene id LOC110485947
gene name LOC106588570
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22069722 ~ 22073496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557205.2
GTCAGAATGGAACCTGTACTGGTGAGTGGACGTGTACTGTGACCTCAACATTTTGTGTGTATCAGCTGATCCCGGATACATGCAGATATGGAACGTGTGGTGGAGATGGCAAATAACGGTGgTTTCTCCCTCGCCGGCCCCTCCACCACTCCCCGCAAGCGACAGGTGCGATTCTCCGCCCGCCACGACATCCTGCTGCTCCGTGAGGTCATTGCTCAGAACCCGTTCTGTTCCAAGGAGTCGGGTCGTATCTGGGCCCGTGTCGGGGAGATCATCACAGCTGCCCTGCAGGACGAGAGCTTTGAGGTGGACGCCCGGCGTTGCAGGGAGAGGACCATGCTGCTGCTGGACTACTACAAGAAGCAGGACTTCCCCAGCCTACGCAGGTTTGGGACAGAGAGGCTGTATGCCCAGAAAGAAGACCTACTCCATGAGGTGTTGGAGCTGGAGGCAGAGAAGGGTCTTCTGGCCAGCGGGGAGAGTAAGTACCAGGATGAGGAACTCAGGAAACGAGCCTTGGAAGAGCTGGCTAGTCAACCAGAGCAGGACAAACCCATCATTATCTCCACACAAACAGGACAACCCAAAGTCCCCATGACCCCAGAGCccgaggagcagcaggagaacctGGCGGAGCTCTCGCTAGTCTCGGCGGCGCCCATGGCCAAGCAGCCTTGCCAATGCTGCTGCCAGACCTACTCAGAGATCCTCAGCTTCCTGGAGAAGCGCTCGGAGGCGGAACAACGACTGCGGGAGGAGGAGTTATTGCTGAGGAGGGAGGAGCTAGAGATCCAGAGGAGTAAGatcactctggagagagagaggctgggggcggagaggaaggagagggagaggaggttcgAGCTGGAGAGCCAGGAAAGACAGGTCATATTGGACCTGCTAAAGGAGAAGGTGCTCAAAGGATGAGAGGATtgatggggtggtggtggaggggggcaGGTGAGGGGCTGAAGGGACCAAAggtgtatggtgtggatgtaacagtataacttctgtcccctcacccctacctgggctcgaaccagggaccctctgcacacatcaacaactgacacccacgaagcatcgttacccatcgctccacaaaagccgcagcccttgcagagcaaggggaacaactactccaggTCTCAGAGAGTGACGTcacccgattgaaacgctattagcgcgcaccaccgctaactagctagcaatttcacatcggttacatggACATAACATTAAGACGTTGGGAGGGTGGTACTACCTCTGGATCGCACCCTCTGCCCCCTGTTCTACGCCAATGGCCTTAGTGAAGGAATCTGCTGTGACACCCATATATAAGTGTGGAGATCCATGCCTAGCATTGAGCTAAGCTGGATGACCGCATTCCACAAGGACACTGACAAAAAAAATAGGTAGCACATCCTCACACTGTACATATACCCACACATTATCTTATTAAACAAATCCTTTGGTGATAGAATAACAAGCTGTTCATCAAGGGTAATTTTTATAGTGAAAAGACAAAATTGCCAGCAATTCTCCCAATGTCAATTAACTCTTTAGTCAATTCTGACTTTGTGGTCATTATTATGAAGCTGTTCCTGCTGAAAATTCAAGAAAGTACTTACGTAACCTCCTAATGATATGGGATGACTACAAGCAATTTTGAAACTGTATTTGTTAATTGAGGAAAGAGTATAGAAAAGTTTCATTAGGCTAGTTAGATTTCTAGGAAATATGACAAAGTTGTGTAacaatttttatttgatttgtattATATTAAATTATACATGACGTACCGTTCCCCCTGAAATACCACTTTTAAAGTATTTAAAACATAATATGTTACCTAGATGTTGTTTCTTCATAATAACTCATTACTTGAGCGTCTCTTTACGTCTTTTTACGCCTTCTACGTAAGGTTACTCTTTGACCTCGCGCATAATTGAAGTAGTCTGAGTGGTTGAAAATTCGAACAAACCGCCCTCTGTTCCAAAGCAGCAATCACATTGGATTATTATACTGCCAATATGTTAATCGTTGGCTACCCAATGAAATTACTCTTATTTTCTTTGACGCGACCTCGTTGCTACAAAGTTTACATTAGCTACGCTAGACGCAACATTGTATACACTTTTTGAGATTACACGAGTCTGCTGTAGTGTACTTTTATTGCAAAAATATTTTTCCAGTTGAAGAATTAGGTGGAGCGCGTTTTTCGTAGAGTAGCCTACAGATCTATGTGCGGATGTGGAAAAACTCAGTTTTCTAGTTTGATAGACCAGTCATACTGCGATCGATAAGTAGCTGTGTTTACTTACGCCAGTTATGTGGGTTAGCTACATATAGGCCGGTGTTTATTTTAGATTTTGTAACATTCCTCACTCGACGTATTTCCGTGTTCTTAAATCCTGCATTTATAAAAGGAGTCGATATTGTCAAT
>TU1316659
gtggatgtaacagtataacttctgtcccctcacccctacctgggctcgaaccagggaccctctgcacacatcaacaactgacacccacgaagcatcgttacccatcgctccacaaaagccgcagcccttgcagagcaaggggaacaactactccaggTCTCAGAGAGTGACGTcacccgattgaaacgctattagcgcgcaccaccgctaactagctagcaatttcacatcggttacatggACATAACATTAAGACGTTGGGAGGGTGGTACTACCTCTGGATCGCACCCTCTGCCCCCTGTTCTACGCCAATGGCCTTAGTGAAGGAATCTGCTGTGACACCCATATATAAGTGTGGAGATCCATGCCTAGCATTGAGCTAAGCTGGATGACCGCATTCCACAAGGACACTGACAAAAAAAATAGGTAGCACATCCTCACACTGTACATATACCCACACATTATCTTATTAAACAAATCCTTTGGTGATAGAATAACAAGCTGTTCATCAAGGGTAATTTTTATAGTGAAAAGACAAAATTGCCAGCAATTCTCCCAATGTCAATTAACTCTTTAGTCAATTCTGACTTTGTGGTCATTATTATGAAGCTGTTCCTGCTGAAAATTCAAGAAAGTACTTACGTAACCTCCTAATGATATGGGATGACTACAAGCAATTTTGAAACTGTATTTGTTAATTGAGGAAAGAGTATAGAAAAGTTTCATTAGGCTAGTTAGATTTCTAGGAAATATGACAAAGTTGTGTAacaatttttatttgatttgtattATATTAAATTATACATGACGTACCGTTCCCC
>TU1316660
CCGGATACATGCAGATATGGAACGTGTGGTGGAGATGGCAAATAACGGTGgTTTCTCCCTCGCCGGCCCCTCCACCACTCCCCGCAAGCGACAGGTGCGATTCTCCGCCCGCCACGACATCCTGCTGCTCCGTGAGGTCATTGCTCAGAACCCGTTCTGTTCCAAGGAGTCGGGTCGTATCTGGGCCCGTGTCGGGGAGATCATCACAGCTGCCCTGCAGGACGAGAGCTTTGAGGTGGACGCCCGGCGTTGCAGGGAGAGGACCATGCTGCTGCTGGACTACTACAAGAAGCAGGACTTCCCCAGCCTACGCAGGTTTGGGACAGAGAGGCTGTATGCCCAGAAAGAAGACCTACTCCATGAGGTGTTGGAGCTGGAGGCAGAGAAGGGTCTTCTGGCCAGCGGGGAGAGTAAGTACCAGGATGAGGAACTCAGGAAACGAGCCTTGGAAGAGCTGGCTAGTCAACCAGAGCAGGACAAACCCATCATTATCTCCACACAAACAGGACAACCCAAAGTCCCCATGACCCCAGAGCccgaggagcagcaggagaacctGGCGGAGCTCTCGCTAGTCTCGGCGGCGCCCATGGCCAAGCAGCCTTGCCAATGCTGCTGCCAGACCTACTCAGAGATCCTCAGCTTCCTGGAGAAGCGCTCGGAGGCGGAACAACGA

Function

NR:

description
trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557205.2 False 2449 mRNA 0.47 4 22069722 22073496
TU1316659 False 821 lncRNA 0.42 1 22070358 22071178
TU1316660 True 676 TUCP 0.59 4 22071424 22073425

Neighbor

gene id symbol gene type direction distance location
LOC118938240 NA coding downstream 105936 21952314 ~ 21963786 (-)
LOC110485942 LOC106588199 coding downstream 152796 21755738 ~ 21916926 (-)
LOC110485941 NA coding downstream 431091 21631086 ~ 21638631 (-)
LOC110485940 LOC106564923 coding downstream 440311 21571828 ~ 21629411 (-)
LOC110485939 LOC106588153 coding downstream 499634 21514788 ~ 21570088 (-)
LOC110485950 LOC106588250 coding upstream 77011 22150507 ~ 22193737 (-)
LOC110485109 LOC106588262 coding upstream 129516 22203012 ~ 22242594 (-)
LOC110485953 LOC100380782 coding upstream 169783 22243279 ~ 22270450 (-)
LOC110485952 LOC106588289 coding upstream 199852 22273348 ~ 22289965 (-)
LOC110485956 srp68 coding upstream 220747 22294243 ~ 22310225 (-)
G1154489 NA non-coding downstream 37393 22031877 ~ 22032329 (-)
G1154093 NA non-coding downstream 73133 21931406 ~ 21996589 (-)
G1154033 NA non-coding downstream 145497 21923947 ~ 21924225 (-)
G1154031 NA non-coding downstream 147421 21921921 ~ 21922301 (-)
G1154027 NA non-coding downstream 150736 21918457 ~ 21918986 (-)
G1154511 NA non-coding upstream 2178 22075674 ~ 22075909 (-)
G1154513 NA non-coding upstream 15234 22088730 ~ 22091285 (-)
G1154582 NA non-coding upstream 106816 22180312 ~ 22180630 (-)
G1154554 NA non-coding upstream 140058 22213554 ~ 22214077 (-)
G1154560 NA non-coding upstream 240205 22313701 ~ 22313989 (-)
LOC110485936 LOC106588110 other downstream 604456 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 809079 21247188 ~ 21260739 (-)
G1153336 NA other downstream 1081949 20984731 ~ 20987773 (-)
G1152758 NA other downstream 1382921 20674724 ~ 20686801 (-)
G1152754 LOC107090753 other downstream 1393970 20656472 ~ 20675752 (-)
si:ch211-214c7.4 LOC106588372 other upstream 389457 22462260 ~ 22502075 (-)
LOC110485982 LOC106567469 other upstream 1142687 23216183 ~ 23220256 (-)
G1155674 NA other upstream 1152718 23226214 ~ 23250232 (-)
G1155782 LOC106585672 other upstream 1328883 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 1526011 23599507 ~ 23601690 (-)
LOC110485946 prpsap1 coding downstream 261 22045534 ~ 22070097 (-)
LOC110485947 LOC106588570 other upstream 246 22069722 ~ 22073496 (-)

Expression


Co-expression Network