XLOC_030232 (gfm2)


Basic Information

Item Value
gene id XLOC_030232
gene name gfm2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 34578479 ~ 34600710 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059110
TGTGCAGTCGATAAGTGTCACCGACTGAACGAAGGCGTTTTATAACCACAAGTCATCCGTTTTCTACATGCTGTTTGTGGAAAATGtcaataaattagtttatttttgagACAGCGCTTCAACCGTCATGTTTTATAGCAAACATAGCAAATTCTCAACGTGACTTTGAAGCACATCAGTCAGTCATGTGTCATAGAGTACAACAGCATCTTTGACTCAACAAGACATTCTTTTGCAAAATGCTTTTAAGTCTGACGTTCCCCGTCCTCCGAGGGTGCACTGGACACCTGGTAAACAGATCCTTACAGGCTCCAAGATGGAGAGTGACATGGAAAAGAAGTTACAGCTTGTTACAAGATGAGGTAAAGTCACTTAGAACGGTGGTCAACCCTGACATCTCAAAAATTCGCAACATAGGCATCATGGCGCATATAGATGCAGGGAAAACCACCACCACTGAGAGGATGCTCTACTACTCTGGCTACACACGGGCTCTTGGAGATGTGGATGATGGAGACACAGTAACTGATTACATGGCCCAGGAGAGGGAGAGAGGTATCACCATCCAGTCAGCTGCTGTTACCTTTGACTGGAAGGATTACAGGATTAACCTCATAGACACACCAGgtCATGTTGATTTTACTCTGGAGGTTGAGAGAGCTTTACGAGTGCTCGATGGAGCTGTCGCTGTGTTTGATGCTTCTGCTGGAGTAGAGGCTCAAACCATGACTGTGTGGCGGCAGGCAGAAAAACatcaaattccttgtgtgtgctTCCTAAACAAGATGGACAAACCTGCAGCTAGCCTGAGGTATTCTTTAGACAGCATAAAGGCCAAATTAAAAGCCAACCCTGTTCTCCTTCAGATTCCCATTGGCTCTGGGAAGAGCTTTACCGGATTGGTGGACTTGATCACTAGGCAGAAAATGATGTGGCAAGGAAACGCACTCACAAACGATGGTCGTTCCTTTGAGATCAACAGCCTTCAGCCCTCGGATGACCCAAATGTGCTGCTGGCTGTCAGTGAGGCCAGAGCGGCTTTGATAGAACAGGTAGCAGATCTAGATGATGATTTTGCAGAGCTGCTGCTGGGAGAGTATGGTGAAAACTTTGATGCAGTTCCTGCAGTGAAGTTGCAGGAGGCGGTGAGGAGAGTGACTTTAGCTCGTAAGGGTGTACCTGTGTTGTGTGGAAGCTCTCTAAAAAATAAAGGCGTTCAACCTCTGCTGGATGCCATCACTGCTTACCTTCCTGCTCCCAATGAGAGGAACCATGACCTGGTGCGCTGGTATAAAAATGATCTGTGTGCCTTGGCATTCAAAGTGGTCCATGACAAACAGAGGGGTCCGCTTGTGTTTGTTCGAATCTATTCAGGAAGCATGAAAGCTCAGTCATCAGTGCACAACATCAACAGGAATGAAACGGAGAAAATGAGTCGACTTCTCTTACCTTTTGCCGATCAACAAATCGAAATCCCATCGTTGTCTGCAGGAAACATTGCACTCACTGTTGGACTCAAACAGACAGTAACCGGTGACACCATCGTGTCCTCCAAAGCATCTGCAGCAGCGGCAATCCGACGGGCTCAGGCTGAAGCAGAGAGCAGGAGCAACTCACATAGTGCGGCTCTTGCAGGAGTGGAGGTCCCTGAGCCAGTGTTCTTCTGCTCCATTGAACCTCCTACTATGGCCAAACAAGCAGatctggagcACGCACTCAACTGCCTGCAGAGGGAAGACCCCAGTCTGAAAGTTAGAATAGATCCTGATTCTGGACAGACAGTACTGTGTGGAATGGGAGAGCTGCACATTGAGATCATCCATGATCGCATTAAGAGAGAGTACAAAATCGAAACTCATCTTGGACCCCTGCAAGTGGCCTACAGAGAGACCATCCTGCAGTCAGCAACAGCCAAAGACCTGTTAGATCGTATTCTGGGAGAAAAGAGGCATGTTGTATCTGTGGAGCTCACCGTTCATCCTCTGAAGGAGAACTCTAGTGCTTCCTGTGACATCACTTTTGAAGAGGACGTAAAAGCGATGCTTCCTGCTGATGTCAGAGAGGCTGTGGAAAACGGAGTTCAGAGTGCCTACCTCCAAGGTCCTGTGCTGGGTTTTCCTGTTCAAGGAGTACAGACTGTCATCCAGAATGTACGTTTGGAATCAGGCACATCTGCAGCCATGGTGTCGGCTTGTGTGTCCCGCTGCATGCTCAAGGCTCTGAAGCAGGCTGGAGGGCAGGTTTTGGAGCCGGTAATGGCTCTGGAAGTGACTGTAGGAGAGGAGCATCTGAGTTCTGTGCTTGCAGATCTCTCCCAGCGACGTGGTACCATATGCGACATCCAAAGTCGACAGGACAACAAGATTTTGCTGGCTGATGTTCCTTTGGCTGAGATGATGGGATACTCAACCGTTCTGCGCACTCTTACCTCTGGAAATGCCACCTTTTCTTTGGAGCTGTCCAGCTATGAGCCCATGAACTCTCAGGACCAGAACATACTGCTCAACAAGATGGCTGGGCTCACTTGACCCTGTCACCAACTGATTATTTATACAGACAATTTCATATTGCTCTGTAGATTGCTGCTTGCATATGGTCTAGAAGATGATCTTGGAGCCCACATCTACAGACAACCCTTGCACTATTTTTTCTCAAGTGAAGAAAACACACCAAGAACCTATTAGTGTGagtatgcatatgtatgtatgtatgtgtgtaaatatacaataattttaCAACAA
>TCONS_00059111
ACAGTAACCGGTGACACCATCGTGTCCTCCAAAGCATCTGCAGCAGCGGCAATCCGACGGGCTCAGGCTGAAGCAGAGAGCAGGAGCAACTCACATAGTGCGGCTCTTGCAGGAGTGGAGGTCCCTGAGCCAGTGTTCTTCTGCTCCATTGAACCTCCTACTATGGCCAAACAAGCAGGTAAtgacattataattttttttccaagcaAGCTTAGTGCCAGAATTGAGATCTCTCTGTGGTttgtaaaacagatctggagcACGCACTCAACTGCCTGCAGAGGGAAGACCCCAGTCTGAAAGTTAGAATAGATCCTGATTCTGGACAGACAGTACTGTGTGGAATGGGAGAGCTGCACATTGAGATCATCCATGATCGCATTAAGAGAGAGTACAAAATCGAAACTCATCTTGGACCCCTGCAAGTGGCCTACAGAGAGACCATCCTGCAGTCAGCAACAGCCAAAGACCTGTTAGATCGTATTCTGGGAGAAAAGAGGCATGTTGTATCTGTGGAGCTCACCGTTCATCCTCTGAAGGAGAACTCTAGTGCTTCCTGTGACATCACTTTTGAAGAGGACGTAAAAGCGATGCTTCCTGCTGATGTCAGAGAGGCTGTGGAAAACGGAGTTCAGAGTGCCTACCTCCAAGGTCCTGTGCTGGGTTTTCCTGTTCAAGGAGTACAGACTGTCATCCAGAATGTACGTTTGGAATCAGGCACATCTGCAGCCATGGTGTCGGCTTGTGTGTCCCGCTGCATGCTCAA

Function

symbol description
gfm2 Predicted to enable GTPase activity. Predicted to be involved in mitochondrial translation and ribosome disassembly. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 39. Orthologous to human GFM2 (GTP dependent ribosome recycling factor mitochondrial 2).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0032790 ribosome disassembly biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060201-3 Predicted to enable GTPase activity. Predicted to be involved in mitochondrial translation and ribosome disassembly. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 39. Orthologous to human GFM2 (GTP dependent ribosome recycling factor mitochondrial 2).

Ensembl:

ensembl_id ENSDARG00000005561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059110 False 2741 mRNA 0.47 20 34578479 34600710
TCONS_00059111 True 766 lncRNA 0.49 4 34588927 34593635

Neighbor

gene id symbol gene type direction distance location
XLOC_030231 aif1l coding upstream 2977 34549365 ~ 34575502 (+)
XLOC_030230 lamc3 coding upstream 35999 34407763 ~ 34542480 (+)
XLOC_030229 NA coding upstream 283406 34293261 ~ 34295073 (+)
XLOC_030228 NA coding upstream 641059 33935619 ~ 33937420 (+)
XLOC_030227 ttll11 coding upstream 909519 33611951 ~ 33668960 (+)
XLOC_030233 enc1 coding downstream 21610 34622320 ~ 34638624 (+)
XLOC_030234 NA coding downstream 42737 34643447 ~ 34797351 (+)
XLOC_030235 NA coding downstream 120427 34721137 ~ 34731442 (+)
XLOC_030236 NA coding downstream 228094 34828804 ~ 34837166 (+)
XLOC_030237 BX530075.1 coding downstream 319685 34920395 ~ 34921911 (+)
XLOC_030221 NA non-coding upstream 1240010 33332449 ~ 33338469 (+)
XLOC_030216 CR855258.1 non-coding upstream 1584588 32993786 ~ 32993891 (+)
XLOC_030213 CR925757.2 non-coding upstream 1691881 32886472 ~ 32886598 (+)
XLOC_030240 CR377210.1 non-coding downstream 520338 35121048 ~ 35127014 (+)

Expression


Co-expression Network