LOC110485960 (LOC106564900)


Basic Information

Item Value
gene id LOC110485960
gene name LOC106564900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22448170 ~ 22451551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557224.2
CCGACTGATACAAGCAGAAGAAGACAATGCGGAAGTAAAACTGGGAGAGGGTTTGTTTTGTTTGTGGACAAAGCCATACCACATATTAAAGGGGTTAGTTATCAGTGTATTTGCAAAACTAGTTGAATACTCACCTCTCAGTCGCCTGAAAATGTCTACATTACAGATGTTGCAAGTGTTCTTAAATGAGCGTTTAACGGCGGCTGCTGTGGAGATTTTCGGGGCAGTTGAGAAAACGGTAGTCGAGTACCAGGAAGAGAATGATCGGCTACGGAGACTGCTGCGGATAACACCGGACATAAAACTATGTAGAAAAGAGTCCCTTCGGTTATCTGTTGCTGTCTCTGAAGACGAGGTTCCACCTGAGCAGCATCATTGTGAGCAGGAGTGGAGAACCAGTCTGCCGCAGGATGACCTAGAACCCAAacagattaaagaggaacaggaggaactctggacctgtcaggaggaagagcagcttcaaGGGCAGGAGGCTGACGTCATAGTTTTCAAATTCCCTCCTCTTTGTGTGAAAAGTAAATGTGATCAGGAAAACCCACTTCAGTCCTTTACTCTTCCCCAAACCCAGACggtggagaacagagagagtgccTCTAAACTAGTGGATCTCCCACATTTTGTCACTTTTACCCACCTAAAGGGTCTCGACATTCCCTGTGACCCTGCAGATAATCAAAACGATTCCTACAGCCACAGTCACAGCTCAGCTGTAAGCAGTGACCCAGTAGGACTTAGGCTGCTGTCACCATTCCATCCCAGCCCACCATTGAATCCCAACCTATCAATGGGGGAACACTGTTGCGAACCCAGCACCGTGTCTAGAAAAGCTCTCCGCTGCTGTGACTGTGGTGAAACGTTTGCTCTGAAAGCTGACCTTCAGGAGCATGTGACTCTCGCTAAGAAGATACCCAGCGAATGCCACCTCTGCCAAAAACTCTACAACTCCACCTGTAAATTGAAGGCCCATGTCAGACTCTGTCACGTGGAGAAACCCTCCACCTGCCCCTTTTGTGGAAAGACCTTCAAACTCAAAGGACATCTTTCCAGGCACATGAGGATTCACACAGGcgagaaaccatttagctgtggtgactgtgggaaaagcttcatTCAGAAGGGGGACCTAAGGAGGCACAtactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcGGAAAGGGAACCTGAACTTGCACTTTCTGACTCACACAGGAACGAATGTCCACAAAGAAagaaacaaataaagaaaacagaATGAAAACAAAGGAAATGAATTAGGACAAAGACATCTTGTTAGAAGATGGACAACACTTTGGAAAAGCAAAGCAACTCTCTGGATCATTCATTCTCTGGGTTTCAGGTAAATAGATGGCATGAATTTACTATTGTAAAACGTTCTATGaacaataaagtttgatttgattgaacaGTACAGAGTAGTTCAACTCACAGGTCTGCTGTTAAGTCTCTTGGTGTTTTCATGTCATTATTAAGCGGAATTCCTGCTAGTTTGTTTTGGAATGTCTCCAGAATAGTCTGACAGATGCTATTGATACATTAAAATGAATACTTCCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557224.2 True 1619 mRNA 0.45 2 22448170 22451551
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485959 LOC106588356 coding upstream 7279 22433438 ~ 22440891 (+)
LOC110485957 LOC106588316 coding upstream 107294 22323760 ~ 22340876 (+)
LOC110485954 ten1 coding upstream 174824 22270081 ~ 22273346 (+)
aanat1 aanat coding upstream 248381 22196238 ~ 22199789 (+)
LOC110485951 LOC106588251 coding upstream 294337 22124284 ~ 22153833 (+)
LOC118938241 NA coding downstream 2222 22453773 ~ 22457004 (+)
LOC110485110 LOC106564993 coding downstream 82499 22534050 ~ 22542246 (+)
LOC110485964 LOC106588395 coding downstream 103111 22554662 ~ 22568808 (+)
trim25 LOC106564896 coding downstream 129186 22580737 ~ 22596273 (+)
c13h17orf67 LOC106564992 coding downstream 154705 22606256 ~ 22610371 (+)
G1154306 NA non-coding upstream 100962 22344536 ~ 22347208 (+)
G1154300 NA non-coding upstream 124647 22323106 ~ 22323523 (+)
G1154276 LOC106588346 non-coding upstream 128626 22315106 ~ 22319544 (+)
G1154294 NA non-coding upstream 133572 22314161 ~ 22314598 (+)
G1154337 NA non-coding downstream 8188 22459739 ~ 22462152 (+)
G1154338 LOC106588372 non-coding downstream 10712 22462263 ~ 22463777 (+)
G1154408 NA non-coding downstream 51196 22502747 ~ 22503029 (+)
G1154410 NA non-coding downstream 52964 22504515 ~ 22510295 (+)
G1154415 NA non-coding downstream 59544 22511095 ~ 22511316 (+)
G1154234 NA other upstream 288741 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 839341 21607492 ~ 21608829 (+)
LOC110485931 LOC106564932 other upstream 1233558 21208787 ~ 21214615 (+)
G1152985 LOC106588089 other upstream 1291292 21155494 ~ 21156878 (+)
LOC110485920 LOC106588056 other upstream 1387370 21057745 ~ 21068780 (+)
G1154412 mcoln1 other downstream 59828 22511379 ~ 22511740 (+)
G1155006 LOC100136012 other downstream 507381 22958932 ~ 22959351 (+)
pitpnc1a LOC106585713 other downstream 1060375 23511706 ~ 23591433 (+)
LOC110485992 LOC106585723 other downstream 1144367 23595876 ~ 23608606 (+)

Expression

LOC110485960(LOC106564900) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110485960(LOC106564900) Expression in each Bioproject

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LOC110485960(LOC106564900) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network