LOC118938241


Basic Information

Item Value
gene id LOC118938241
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22453773 ~ 22457004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035498.1
ACACAACTTTCAGTTGACTGAAAATGGACTCGCTCTCGCTGATACaaatacaagacaaactggattTTGTGACTCCCTGcagctctctctcactgtctctggaAAAAGAGGTTCCTGCTGAGCAGCAGCAATGTGAGCAGAAGTGGAGCCCCTGTCTGGGGAAGGAGGACCCAGAGCCCACAGAGattaaagaggaagaggaggaagtcaAGGCCagtcaggaggaagagcagcttcaaGGACTCTTTGATATGAAATACTCCATATTCACTACTCCCTGTGTGAAAAGTGAATGTGATCAGGAGGTACTGTGACCTGTCTGAAGAGTCTAGACACTTCCTGTGACTATCCAGATAAACAAAACCATGCCTCCAGCTGTAAGCAGCGACCCAGTAGGACTTGACAGCAGCCCACCATTGGGGAACACCACTCCAAAACCAGCACCACGCCTAGAACAACGTACGGCTGCCCCGACTGTGGTGAAACGTTTGCTCTGAAAGCTGACCTGCAGGGGCATGTGAGTCTCACCAAGAAGGGATCCAGCGTCTGCAAAAAAAAGCAACAACTCCACCTGTAAATTGAAGGCCCATGTCCAAATCCGTCACATGGAGAAACTCTGCACCTTCCCCTTTTGTGGCAAGACCTTCAAGCAAAGGAAATATTTTCAGGCACATGatgattcacacaggagagaaataatttagctgtggtgactgtgggaaaagcttcatTCAGAAGGGGGACCTAATGAGACATAtactgactcacacaggagagaaaccatttagctgtggtgactgtgaGAAAAGCTTTAATCGGAGGGGGCAGCAGAAGGTGCACATAcagactcacacaggagagaaacaacaTGGCTGCTTAGTCTGTGGTAAAAGATTCACTCATAAGGCTTATCTAGTGAAACATGTGGATAAGGTCCacaaaggaaggaagaaagaaaacAGGATGAAAACGGAAAGAaaatgaaataggacaaatatattCTATCAACAGATGGGAATTTTAAAAAGCAGGATGAGGACAAACCACCTCTGGATCATTCATGCTGTTCTCTTAAGACAAAATGGATGTGATGAATTTACTTTTAACAGAATATTCTTTGTAATAAAGTTTCATTTTTATTTGAAGGGTGAGGTAATGATCAAACAGTAGTATGCAGTATTATGTGAATCTCACAGGTCTGCTGTTGAAAGTCTGTTGATGTTTTCACATGATTACCAACTGGAATATCTGGTTGTTTGTTTTGGAATgtctctcagggtgatgagagaatGGTCTGGCTGATGTTATTGATACGTAAAAAATGTTTACACTTTCCAGAAAATATCACCTTCCATCTGTCTTTTTGTCATACATTTTGACCTAATGCTGCTCATTCAGGATATTGTTTGAGTCTTTATGGAAGTAATGATTTAAAGTCGATTCCTGATAAGTGCACTTTGTGTGAGTGAAAACTCTGTTCTAAGTGCACAACAGTGTTTGTCCAGTCCCATTTCAGTGGCACCCCATGTAATTTCTCCCGATAAGCGCATTCTCTTTTTAAATGCATGTTTTCACATCAGTCCCAAGCCGTTGCAGTTGTCAAGAGTCACCTGTGTTAAAATGCATTGTCTTTCAATTCAGTTCATGCAAAAAAGATCGTCCTATTACTAATTAAAACTGTTTCCCCAAATGAA
>XR_005035499.1
AACTTTCAGTTGACTGAAAATGGACTCGCTCTCGCTGATACaaatacaagacaaactggattTTGTGGTTTGTTCATTTACCAGCATTATTTCCTCATTTACGAAGCTAGTGTGCTAGCTGAATATCCAACTCTCAGTTGACTAAACTACAACTGAAAATGTCTAAAATGAGTGTTTAACGGCGGCTGCTGTTGAGGTTTTCGGGGCAGTTGAGAAAACAGTAGTGTAGTATCAAGAGAAGAGGATCACACCGGATATAAAACTAAGTAGAATAGGCACCAATGCAGTAATGGCTGGCTCTGGTCTacttagtcccccccccccccctccttcaagactgttggaaaaggattccaagtgaagctggttgagagaataccaagagtgtgcaaagctgtcatcaaggcagacagaggACTCCCTGcagctctctctcactgtctctggaAAAAGAGGTTCCTGCTGAGCAGCAGCAATGTGAGCAGAAGTGGAGCCCCTGTCTGGGGAAGGAGGACCCAGAGCCCACAGAGattaaagaggaagaggaggaagtcaAGGCCagtcaggaggaagagcagcttcaaGGACTCTTTGATATGAAATACTCCATATTCACTACTCCCTGTGTGAAAAGTGAATGTGATCAGGAGGTACTGTGACCTGTCTGAAGAGTCTAGACACTTCCTGTGACTATCCAGATAAACAAAACCATGCCTCCAGCTGTAAGCAGCGACCCAGTAGGACTTGACAGCAGCCCACCATTGGGGAACACCACTCCAAAACCAGCACCACGCCTAGAACAACGTACGGCTGCCCCGACTGTGGTGAAACGTTTGCTCTGAAAGCTGACCTGCAGGGGCATGTGAGTCTCACCAAGAAGGGATCCAGCGTCTGCAAAAAAAAGCAACAACTCCACCTGTAAATTGAAGGCCCATGTCCAAATCCGTCACATGGAGAAACTCTGCACCTTCCCCTTTTGTGGCAAGACCTTCAAGCAAAGGAAATATTTTCAGGCACATGatgattcacacaggagagaaataatttagctgtggtgactgtgggaaaagcttcatTCAGAAGGGGGACCTAATGAGACATAtactgactcacacaggagagaaaccatttagctgtggtgactgtgaGAAAAGCTTTAATCGGAGGGGGCAGCAGAAGGTGCACATAcagactcacacaggagagaaacaacaTGGCTGCTTAGTCTGTGGTAAAAGATTCACTCATAAGGCTTATCTAGTGAAACATGTGGATAAGGTCCacaaaggaaggaagaaagaaaacAGGATGAAAACGGAAAGAaaatgaaataggacaaatatattCTATCAACAGATGGGAATTTTAAAAAGCAGGATGAGGACAAACCACCTCTGGATCATTCATGCTGTTCTCTTAAGACAAAATGGATGTGATGAATTTACTTTTAACAGAATATTCTTTGTAATAAAGTTTCATTTTTATTTGAAGGGTGAGGTAATGATCAAACAGTAGTATGCAGTATTATGTGAATCTCACAGGTCTGCTGTTGAAAGTCTGTTGATGTTTTCACATGATTACCAACTGGAATATCTGGTTGTTTGTTTTGGAATgtctctcagggtgatgagagaatGGTCTGGCTGATGTTATTGATACGTAAAAAATGTTTACACTTTCCAGAAAATATCACCTTCCATCTGTCTTTTTGTCATACATTTTGACCTAATGCTGCTCATTCAGGATATTGTTTGAGTCTTTATGGAAGTAATGATTTAAAGTCGATTCCTGATAAGTGCACTTTGTGTGAGTGAAAACTCTGTTCTAAGTGCACAACAGTGTTTGTCCAGTCCCATTTCAGTGGCACCCCATGTAATTTCTCCCGATAAGCGCATTCTCTTTTTAAATGCATGTTTTCACATCAGTCCCAAGCCGTTGCAGTTGTCAAGAGTCACCTGTGTTAAAATGCATTGTCTTTCAATTCAGTTCATGCAAAAAAGATCGTCCTATTACTAATTAAAACTGTTTCCCCAAATGAA

Function

NR:

description
PREDICTED: zinc finger protein 92 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035498.1 False 1694 mRNA 0.42 2 22453773 22457004
XR_005035499.1 True 2039 mRNA 0.43 3 22453777 22457004
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485960 LOC106564900 coding upstream 2222 22448170 ~ 22451551 (+)
LOC110485959 LOC106588356 coding upstream 12882 22433438 ~ 22440891 (+)
LOC110485957 LOC106588316 coding upstream 112897 22323760 ~ 22340876 (+)
LOC110485954 ten1 coding upstream 180427 22270081 ~ 22273346 (+)
aanat1 aanat coding upstream 253984 22196238 ~ 22199789 (+)
LOC110485110 LOC106564993 coding downstream 77046 22534050 ~ 22542246 (+)
LOC110485964 LOC106588395 coding downstream 97658 22554662 ~ 22568808 (+)
trim25 LOC106564896 coding downstream 123733 22580737 ~ 22596273 (+)
c13h17orf67 LOC106564992 coding downstream 149252 22606256 ~ 22610371 (+)
LOC110485978 LOC106564882 coding downstream 623659 23080663 ~ 23325301 (+)
G1154306 NA non-coding upstream 106565 22344536 ~ 22347208 (+)
G1154300 NA non-coding upstream 130250 22323106 ~ 22323523 (+)
G1154276 LOC106588346 non-coding upstream 134229 22315106 ~ 22319544 (+)
G1154294 NA non-coding upstream 139175 22314161 ~ 22314598 (+)
G1154337 NA non-coding downstream 2735 22459739 ~ 22462152 (+)
G1154338 LOC106588372 non-coding downstream 5259 22462263 ~ 22463777 (+)
G1154408 NA non-coding downstream 45743 22502747 ~ 22503029 (+)
G1154410 NA non-coding downstream 47511 22504515 ~ 22510295 (+)
G1154415 NA non-coding downstream 54091 22511095 ~ 22511316 (+)
G1154234 NA other upstream 294344 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 844944 21607492 ~ 21608829 (+)
LOC110485931 LOC106564932 other upstream 1239161 21208787 ~ 21214615 (+)
G1152985 LOC106588089 other upstream 1296895 21155494 ~ 21156878 (+)
LOC110485920 LOC106588056 other upstream 1392973 21057745 ~ 21068780 (+)
G1154412 mcoln1 other downstream 54375 22511379 ~ 22511740 (+)
G1155006 LOC100136012 other downstream 501928 22958932 ~ 22959351 (+)
pitpnc1a LOC106585713 other downstream 1054922 23511706 ~ 23591433 (+)
LOC110485992 LOC106585723 other downstream 1138914 23595876 ~ 23608606 (+)

Expression

LOC118938241 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

LOC118938241 Expression in each Bioproject

Bar chart with 21 bars.
LOC118938241 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network