si:ch211-214c7.4 (LOC106588372)


Basic Information

Item Value
gene id si:ch211-214c7.4
gene name LOC106588372
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22462260 ~ 22502075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557225.2
AAGGAGGGGCAGTGGTTTAGCATATGACATCATCCATAGTTTTTTAAATAAACCTCAGGCCATGGTTCTTCATTGGTCCTAGCTGAATAAAtcgattttttgggggggtgctTCTGCAATTTCACCCTCGCTCGACTTTGTGGTAACGCCACTCATTCCTCTGTCCCGAGAGGTAGCTTCTGCGGTCCCGGGAACGTTACTAAAGAGGGATGCACGCCGTTTGAACAAGTCAATTGAAACTACAGCGTCAGTGCGAAGCTTGCCAGTGAAGGGAGCCAGTTGCACGTTTGATTGTTTGTCCTCTACGTTTATAACCTCCGCACCGACATATTTGGTCTGTTTTTGTCCAGCCAGCGAGGAAGTAGCCTTAAAAACAGGAGTCGCCTACAACAGTACCTGAAAGAATTTGTGGGGGGGAAACGCTGCGAAGCGTGCCTCGACATTCTTACGATCCTTGAGGTTGTTGAGAGGACGTTGGCTTCATTCCGGGTTCAGTGTGTTTGTGAGCCGCTGGATCCGGTGAGTGAGACCGTTGCCAGGCCTACAAGGGATGAAACCGGATGGGGTTGCCATGGAGCCCACAGAAGCCGTAGGAGCTGAGCCTTCGGCCCAGGGGATGGCCACCGACGAGATGCCTGCCCAGCCAGCTCCTTCAACTTCCCCGTCCTCTCCATCACAGCCTGAAGACAACCAAAACAgcgcagcaccccctgaaaaccCCACAGCACCCCCTGAAAACCCCACAGCACCCCCTGAAAACCCCACAGCACCCCCTGCATCCAAGGAGGTCAATGGGGCCAATGGCAAGGCAGCAGCTGACCCCAAACCCAAGGCTAAGACCGTGGGCTTGGCTAAACCACGGCCAGGCACAGCTGGAACCAAGACCGTAACGGGTCCGGCAtcgggacccagcacctctcgtCCGGGCACGGCCCCAAGCCACATGGCCAATGGATTAAAGTCATCGGCcagtgacctggccaagaaagcTGCTTTGGACAAAAAGAGAATCTCCACTATAGCTGGAGCACCGGCTGCAGCCACAAAGAGGTCCGTGGCTTCCACTGTCAGGACCCAAACTAAGGTAGCTGTCCGAGTCCCCAGGTCCACCTCTGCTACCAGGCCAACCAACGCTACATGGACTGCGGCGACGGGGCTTGGCACTCCAACGAGGAGACCTCCAGCTGCTGGGCCCATTAATGGGGCTGGGGCCAGACCCAAAACCACAGctTCCAGACATGCTGCCCCCAAGCCTCCCAGCACTTCAGCTGCGGCCAAACCCGATAGGACACTGGTTTCCAAGACAACCAGGCCTGCCGCTGGTCACACTGGATTGTTAATGGGCACATCCAAGCCAGCTGCCTCCGGCTCCAGCAGACCTGCAGCTTCCAGAGTCGGTACCACAGCCCCCTCCACTGGCAGGACTACCACAGCGCAGGCACCCAAACCTACAGGCCCTGCCAAGAAAGATGTCAGCAGACCAGCAACCACTACCACAGCCAGAAAGCCGGTAACATCCACCACTACCAAAACGACCAAACCTGACCCCCCTAAAGCGACTGCAGCCTCCAGACCCGAGCCCGCCTCCAAAAGGCCCCATCCCACCAAGGCGGCAGACACCAAGCCAGCCCGCCCTACATCACAGGACCCCAAGCCCCTGCTCACACGTAAAGCCCCTCCCACCACACGGCCCCCTGCCACACGACAGCCCCAGGGTAAGaccccccctgcctcccccagCAACAAGCCCGTGGGCAGCACCGCCCCCCAGTTGGTCAAACGAGCCTCTAAACCAACCCAGTCTGTCCTGCCCTTCACTGCCAGACCTGGAGCTCCcaagtctgcagcagcagtggctGCCACAGCAGCAGCTGCCGTGGCAACAGTCACCATGATAGCCACAGCAGAGCCAGAAGTGGCAGCTTCAGAAATCCCAGCACCAGTGTCTGCATCTTTGCCAGCAGTGGCCCTAGAGTCCAGAGAAGAGGTTTCAGACCCAACTCCTCAGGATACTActtctccatctctaccacaGAGCCCACTCAGGCTGGCTCCTGCTCCACCACAGGACTCACTAGTCACTGTTGCCCAGGAGGAGAGGTCTGAACAACCAGAGACTGTCCCAGCAGACCCGCCACAGCCAGCACCAGACCAGACCTTACACCAGGACATCCCCGCAGCAGTGGCTAGGGCTACACCCAGCCCTCTGGATTCCTCAGAGAAAGCCCAGCTCAACATGGATGAAGAAGAGGACGAGGAGAGGGAGGGCAGCCAGCGGGTGTCTGTGTCAGAAATGAGCGGCTCCCAGCCCACGGAAGAGTCCAGGCCGGGCTCAGCCGGCCCTGCGGGTTCAGGGTGGCGTGCAGGCGGTGCCCTGCTATCGGAGTTGGACTCTGAGTTGAGCTGCAGCCAGCAGGGGGCGTCGGAGCTGAGCGCCCCGGGCGTCCTGGAGGGCACAGAGAGTATGGATGACCTAGGAGATGCCAGTCTGAAGGGTGCCATCGACATGGAGGGCATGTCTGCCTCGGCCGGCTCGCCTGACTTCGAGAAGGTGCCCGACATCCCGACCAATGATTTTGATGACAACGATGAAGACGGAGACCGGGTGTGCGACATGGAGGTGGGTTCGGAATGGGCGGATGACCCGAGAAGAGCGAGGCGTGACGAGGATGAGGATGACGATGTGGAGATGGCCAGTGAAGGGGTGACTGAGAGCGGGCTAGAGAGCTATGGGAATGCAGACGAGGATGACTTTGCAGAGGATGAGAGACTGGACAACCTGAACCAAGCCCTGCCTGCCCTGGCCGCCCAGTGGGACCAACCCAACCCCAACTCCTTTTGTGACCCCTGGGCCCAGCCGCACCCCCAGGCTGCCTCAGCCTCCCCCCTGCAGACTCCTACCAGCCCCTCAGACCCCTGGCAGGCTGATATGGAGACACCCACCCAGTACTCCACTCAACCCTGGCTGCAGCTGGCTGCCACACCATTTGTTCCAGCCCTGCATGAGCCCTTACACCAGCCTGCCCCTGCATCTCCACTTGAGAAAGAGACCCTAGCCCCATTGCACTCCCTGTCCCCCATAGCTGCCTCCGGCCGCGGCATGTCACACTCCAGCACCCTAAGCGCTACGGAGCTGGCTGTCCACTGCAACAGCGAGACCAGCACCAGCACCCCAGAGGAGCTCTGTGACTACAACAGCAGCTCCGGGGTGGAGTCCCGCTCTGAGGGGGGGAAGCTCCACACCCTGCCTGCCGCCCTGGCCCCCGTGCGCTCCCTCCAGCCTGAATTGGAGGACCTGGGCatccacctggagagagaggactgggaggTGGCAGAGACCCTGCCAGCCAACGAGGTCCCAGGGGACCCCGCCACAGCACCCACGTCCAACCCCTCGTCCTCCTCTACCACGGAGGATGAGGCCAGCGACACGGAGGGCGAGGCCCAGCTGGATGAGCTGGGCCAGGGCATCCACAACGCCACCTTCGACCGCAAGCCCGGCGCCCAGCGCTGCCTGTCAGCcctggaggaaggggaggagaccagtgGAGGCGCAGAAGAGGGTGGCGACACCCCCCAGTCTGTCAACTCGGTGGCATCCTACGCCTATGACATGACGGCGTCCAACTCCAGTAACCACTCCACTGCTGAGAGCTGCGCCAAGAGCCCCGGCATCTTCTCCCTGGAGGAGCTGCCTGAGGAGGCCAAGGAGCTGGAGCTGACCCTGCCGCCGCCCCAGCAACAGGCTGCCTCGGCAGACTCCCTCCTCGTCTCCAACCCAGAGGAGCAGCAGTACATGTTGTGTGGGACGCTTGAGACAGAGCTAGGGGACACGGGGGATCTGAAACCCCTGGACCCCGCGCTGTTCGAGGCCCCCCAGCAGCCCGGGGAGGGCCCCCGTGTCACCCAACCGCCCTACTACTCCACTGTCTGTGAAAACACTGAGAACTCTCTCACAGGGCTCAACGTGCTCCCCCAGCCACACTGCCGCCGCGACCACCACCCCAACCCCCACTGTGACCTCTTGACCCCACCCAGGCTGACCTGTGCTGACCTGCCCCCCCGGAGCCCTCGCCTGCAGGCCAGCCCCCAGCTCCGCAGACTGGAACGGCACCAGCAACAACTACTAGAACTGCAGCAACGCAGAGAACAGCAGGGAAAACCCAAAGAAGAAGAGGCGAGGAAGAATAGCGAGAAGGAGATGAAGAAAAAGGAGGcggagcagcagcaggaggaggaggagaagctgaGGAGGGAGGAGCTGAAGCAGAGGCAGCAGATCATGCGGTGGCAGcaggagctggaggagcaggcACAGCAGACGTCACCGCAACAACAGCCCCAGAAAGGTCAGGCAACAGTGCTGCTTTCGCCTTCCTCTGGTCTCCATACCATTTATGAAGCCCTGGAGAGTGATGAAGAGGGGAAGCAGATTGAGGTTAATGTCCAGCTCGAACAATGCGAAGAAGCCCCGCTGGACAACGAGGTTGACAGTAACCGTGACTGTCGAGAGGTGTTGGATGAGGACAGAGCTGATAGCAACTCCACCTCCACTCTCAGTCCCTCTCCAGACTCCCCCGAGCAGGAAGAGTCCCGGGACGCCTCCCCACCCTCCGTCTCCCCAGAATGCCCCCCTCCCCTGGACCTGGACTGGGGGACGAAAGTTGACATTGTCCAGCAGCTGATCAACCAGACCTTGCTGCTGACGGGCGATGGCTGCTCCTCCCTGCTCCTGCTGCCCGGAGGCACCTTAAGCCCCCTGGAGGCCAGCctgtggcccaaactgctgcccCCCCTTACCCCTCCCTCAGCCACGGTCACGTCGGTCAGCAGCTTCTCCCCGGAGGCCCCTGGCCAGTCCCCCCAGGGTGAGTGGACAGTGGTGGAGCTGGAGACACACCACTGAGGGATGTAGAGACGTGTGTCTCACCATTTAATGGTTGCACACACTGTTGTAACAACACCTCTCTTACCTTTCCATTCATCACTGCAAATACAACACTACTGTTTGATACACTGAACTAACACCACTGTTTTTTCAAACATGATACCTTTCGATTGGGGGGCAAAGGACACTGACACCACGGTTATGTCAATCACAGACTGACTCACACTGTaattttacacctctctctcatgCTAAAACTACGTTAGGTTACATACCAGCAGCCCCAGAGGGCTACTACCTTGATTAGATTGGTTGACTGAAGCTTCTGGGCCAGCTATTTGGGTAGAATAGTTGTTAGCCATTGTCAATTTTACTGAAGCTAAAactacatttatttaaccttttatctaactaggcaagtcagttaagaactaattcttatttaggAACgggggattaactgccttgttcaggggcagaacgacagatttttactttgtcagctcagggatt
>TU1316824
GGATGTAGAGACGTGTGTCTCACCATTTAATGGTTGCACACACTGTTGTAACAACACCTCTCTTACCTTTCCATTCATCACTGCAAATACAACACTACTGTTTGATACACTGAACTAACACCACTGTTTTTTCAAACATGATACCTTTCGATTGGGGGGCAAAGGACACTGACACCACGGTTATGTCAATCACAGACTGACTCACACTGTaattttacacctctctctcatgCTAAAACTACGTTAGGTTACATACCAGCAGCCCCAGAGGGCTACTACCTTGATTAGATTGGTTGACTGAAGCTTCTGGGCCAGCTATTTGGGTAGAATAGTTGTTAGCCATTGTCAATTTTACTGAAGCTAAAactacatttatttaaccttttatctaactaggcaagtcagttaagaactaattcttatttaggAACgggggattaactgccttgttcaggggcagaacgacagatttttactttgtcagctcagggattcgatcttgcaacctttcggttactagtccaatgctctaaccactaggctacctgccgccccaggtagcctcacacacacacacaca
>TU1316825
TCGCCTGCAGGCCAGCCCCCAGCTCCGCAGACTGGAACGGCACCAGCAACAACTACTAGAACTGCAGCAACGCAGAGAACAGCAGGGAAAACCCAAAGAAGAAGAGGCGAGGAAGAATAGCGAGAAGGAGATGAAGAAAAAGGAGGcggagcagcagcaggaggaggaggagaagctgaGGAGGGAGGAGCTGAAGCAGAGGCAGCAGATCATGCGGTGGCAGcaggagctggaggagcaggcACAGCAGACGTCACCGCAACAACAGCCCCAGAAAGGTCAGGCAACAGTGCTGCTTTCGCCTTCCTCTGGTCTCCATACCATTTATGAAGCCCTGGAGAGTGATGAAGAGGGGAAGCAGATTGAGGTTAATGTCCAGCTCGAACAATGCGAAGAAGCCCCGCTGGACAACGAGGTTGACAGTAACCGTGACTGTCGAGAGGTGTTGGATGAGGACAGAGCTGATAGCAACTCCACCTCCACTCTCAGTCCCTCTCCAGACTCCCCCGAGCAGGAAGAGTCCCGGGACGCCTCCCCACCCTCCGTCTCCCCAGAATGCCCCCCTCCCCTGGACCTGGACTGGGGGACGAAAGTTGACATTGTCCAGCAGCTGATCAACCAGACCTTGCTGCTGACGGGCGATGGCTGCTCCTCCCTGCTCCTGCTGCCCGGAGGCACCTTAAGCCCCCTGGAGGCCAGCctgtggcccaaactgctgcccCC

Function

NR:

description
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557225.2 False 5401 mRNA 0.59 6 22462346 22502075
TU1316824 False 580 lncRNA 0.43 1 22462260 22462839
TU1316825 True 723 TUCP 0.59 1 22462953 22463675

Neighbor

gene id symbol gene type direction distance location
LOC110485958 LOC106564903 coding downstream 46820 22344499 ~ 22415526 (-)
LOC110485955 LOC106588346 coding downstream 139685 22315117 ~ 22322661 (-)
LOC110485956 srp68 coding downstream 152121 22294243 ~ 22310225 (-)
LOC110485952 LOC106588289 coding downstream 172381 22273348 ~ 22289965 (-)
LOC110485953 LOC100380782 coding downstream 191896 22243279 ~ 22270450 (-)
LOC110485962 LOC106588379 coding upstream 5842 22507917 ~ 22529861 (-)
trappc5 LOC106588386 coding upstream 28730 22530805 ~ 22532985 (-)
LOC110485966 LOC106588413 coding upstream 95365 22597440 ~ 22604973 (-)
LOC110485969 cbx8 coding upstream 110110 22612185 ~ 22623151 (-)
LOC110485970 LOC106588430 coding upstream 125671 22627746 ~ 22632364 (-)
G1154702 NA non-coding downstream 5512 22454204 ~ 22456834 (-)
G1154558 NA non-coding downstream 10796 22439685 ~ 22451550 (-)
G1154639 NA non-coding downstream 120638 22341508 ~ 22341708 (-)
G1154623 NA non-coding downstream 138256 22323795 ~ 22324090 (-)
G1154560 NA non-coding downstream 148357 22313701 ~ 22313989 (-)
G1154737 NA non-coding upstream 10868 22512943 ~ 22513154 (-)
G1154748 NA non-coding upstream 20395 22522470 ~ 22522678 (-)
G1154758 NA non-coding upstream 32971 22535046 ~ 22535396 (-)
G1154759 NA non-coding upstream 33338 22535413 ~ 22535618 (-)
LOC110485947 LOC106588570 other downstream 388921 22069722 ~ 22073496 (-)
LOC110485936 LOC106588110 other downstream 997080 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 1201703 21247188 ~ 21260739 (-)
G1153336 NA other downstream 1474573 20984731 ~ 20987773 (-)
G1152758 NA other downstream 1775545 20674724 ~ 20686801 (-)
LOC110485982 LOC106567469 other upstream 714108 23216183 ~ 23220256 (-)
G1155674 NA other upstream 724139 23226214 ~ 23250232 (-)
G1155782 LOC106585672 other upstream 900304 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 1097432 23599507 ~ 23601690 (-)
LOC110485996 LOC106586353 other upstream 1204682 23699036 ~ 23707634 (-)
si:ch211-214c7.4 LOC106588372 other upstream 114 22462260 ~ 22502075 (-)

Expression


Co-expression Network