trim25 (LOC106564896)


Basic Information

Item Value
gene id trim25
gene name LOC106564896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22580737 ~ 22596273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557233.2
cTGCGGATAAACCCCACCGAAGAAGAATCCACAGACAGCTACTCAGATCTCGGACAAGTCAAGGGACGTAGAATACGTTTGTCAGCTGTCAGTGCACTTTACAGCCTGgtttcCATACAAAGGTGAAGTCGTCATTTCTGCTGTTGGCAGGATAGTAGTTTAAACAGAACACTCACAGACAACACAGCAGCAGACAGTTGTAGTTCCATCATGGCGGAGGATATGTTTTCCCTCATGAGTCTCGAAGACGAACTGAGCTGTAGCATCTGCCTCTGTGCTTTCGACTGTCCGGTGACAATTCCATGTGGACACAACTTTTGCCAAGAGTGTCTCCTAGAAACCTGGAAAGACAACTACAGCTGTCCACAATGCCGGACCCACTTCACCACCAAACCAGAGCTGAAGAAGAACACCGTTCTCAGCACTGTTGTGGAAACGTTCAAAATGAAGTCGAATAAAAGCGACCTCCCCAGTGAGGTGGGCGACTTAATCAAGTGGGATGCGGTCAAGATGGAGCCCAAAGAGGTGGCTATCTTGTGCGACACCTGTATGGAAGCCAAAGCATTCAAGACCTGCCTCACCTGTATGGCGTCATTCTGCCTTGAGCACGTGAGGCCTCATCATGAGAACCCAGTGTTTGGCGCGCATCAGCTGAACGAGCCTCTGGGCGACCTGCGCGACCGTATCTGCCCCGACCACCACAAGCTGATGGAGTTCTACTGTGTCCAACATGGCCGCTGTATCTGTGGTGTCTGTCTGCAGCAGGTGCATAAAGGCTGTACCTTCTCCAACCCTGATGAACAACGGGCACTGCAAGAGTCTGATTTGAGGGGCAAGTTGAGTATGCTGAATGGAAAGATTGACAAGAACCAGACTGTCATCTCTCAGATGAGTGACCAGCAGAGCAAGTTGAAGGACTCTGCAGCCAGCAGGAAGAGAGCTCTGGAGGACGAGTACCGCCAAATCCGGGAGCTGCTGGACCGTGATGAGCGTGAGGCTCTGAACACCGTGGACCGCGAGCAGGAGAGCGCTCAGACCAAACTCCAGAACCTCATAAAGAAGTTCAACCAGAACATTGCGAAGCTTAGTGCGGCAAAAGATGGCGTCGACAGCCTGCTCAGTCAGACTCAGACCGTGGCTTTTCTACAGGCCTCAGTTGACATGCCGGCAGCGGTGGCCTTTGACCCCTATACCCCGAAGGTCAACCTGGACTCTAAGGCCTTGGCAGCCTGGCATGCCTACTCTGCAGTCCTGAGGGAGCATCTCACATTTGTACTGAAACAGCCTGTAGAGGCCAGACTGCAGATACtcaaaccagCTGAGAGGTTTGCTCCTCCTCTGCTGCCAAACTTCTATGAAATGGGAGGCATGCCACCACCAGGTCACCAGAGAATGCCTCGATCCCACAGCCCAGGAGCCCCCCTCAGGGCAAACCAGAGGAAGAAGCCTCCACAAGATTCAAACCGAGAGAGAAAGTCAGACAAGAAACGAGATCACAAAGAAGGGAAAGAACATAAGGCTGACAAAAATCCCCAAAAGCCACCTAATGCTCCCAGAGAGTTTGCCACTCCTGTTCCACACACACCAAGGGACCACCCCAGAGGACAATCAGCAGAACCCAGACCCAGGAACAGGGAGGACCCAGGACAACCAAGTGTTCTCCCAAGTATCACGTCTGCAGCAAAACGAAATGACCTTCTGCAATATGGCACGGTTCTCACCTTTGACCTCAAAACAGCCCACAAGCGCATCTCCCTCACAGAGAACATGACCGTGGCCTCTGTGTCAGACGAGCCCACCCCTTACCCCGATGGCCCCGCCCGTTTCTCCGTCTGCAGCCAGGTGCTCACTTCCAAGGGCTTCTCCCGCGGCCGCCACTACTGGGAGGTTAAGATGAGCAGCAACAACTTCACCGGCATCGGCCTGGCCTACAACAGCATCGACCGGAAGGGTCCGGCTAGCCGGCTGGGGCGTAACGCCCAGTCCTGGTGCGTGGAGTGGTTCAACGTCAAGCTGTCGGCCTGGCACGCCAGCAGTGAGACTGTACTGCAGAACCCGAATCCGACCCGCGTCGGCGTGCTGCTGGATTGCGAGGAGGGAACGGCCACTTTCTATAACGTACAGGACCGGGCATACCCGTTCCATACGTTTGTGTTCCAGTTCGCCGAGGCAGTGTACCCGGCGTTCTGGCTCTTCTCCAGCGGCTCGTCTGTTAGCCTGTGCAAGCTGCAGTCTTGAGAAGTTAACACACATTCTTCTCCCTCGCAAATAATTAGAATATACAGCCTCTGGGTCAATAAATGACTTAATCATACTGATATTGGGAACTTGTATCTTAAAGGTTATTATTTGGTTGTAGTTACTGGCTTTAGTAATAATGCAGTGTAGGTCATATCATTTTGGACTTTGGTCTCTTGTAACTGCAGCAACCTCTAAACAGGCAGCATTTGTTAATCAGTAACTAATGAAAACTAAGCACTTGCATACAGGTAAAGGAACATTACAAATTATTGTACAATATTATTGTATTGTCAAAAGCATGATTGACATCCTTactaccttttttttttactgctgttGTGATGTCAGCAGCATGCCGTGAAAGGAATTGATTTATTCCTTAATGGTTCATCAGACATAGCGAGTTACATTGGCTGGATAGAAGGAATTAGCTGACATTGTGATCATTCATGTCTGATTCGCAAGTGGTTACGTGACGTGCTATAGGCACGACTTACAAACAGAACTACTAAGTGGTATTTGAACCAGGCGAATGAGTTCTTTCTCCGGCTCTGCAGTCCTGGCTAAATGTCTTGATCATCCAGTTTATTTACAGATACATTTAAGTGGTCTGTGGGTAGCTGTTTACAGCCTGTTTTATCAGAGCTTATGATCTCTTGGTGTGGGTCTTGGCAGTACACAGTAATCACATGTAATATGCACAAAACGACATGAATAAACATGTTTAACATGTATGTTATCTGCTGTATGTGAACAGTACCACAACGTTCAGAAGGCCATGTACTGGCACACCTATTGCAAGAGTGTGGATGGCTTTTGCAGGTGTTAGGCATCCCCGCATTAGGGAATGTCATATCCAATAACACCACTGGATATAGAGAATCAATGAATCGAACAGAAAAGCATCCACATTATTCTTGATACCCCCAAAGGAAAAGTGGGTATCGTTCCCTTTTTTTCTTGATCTAATACATTTCGCTACAGTGTTTCACATAGAGCCTAGAAGTGAAGGGGGTGCAGTGTGAGGATGTGCTGAAAGTGCTTCCTGACACTGCTACTAGGACATTGCTACTACAGGCTTGATAGAACCTAGCCTGGTTGCCAGATCTGCATTTGTTTTAGAATTACAGTGAACAGGGCAGAGGAGTTGGTTGATCTGGCAACCGGGCTAGATAGACCCAGCCTGGCCCATAAGAACAAGCAGAGGTCATTTAGACCCTGTGAACAGGAGTTGTTCCAACTCTGTGGGTTTTGTAAATAGGGATGATTTAGGGCTGGGGTTTTTCCTGTCTGTGACCAGACAaaagaaaaactctgggcccAAGTTATAGCTAATTTAGCTACATATCTGTAGCACAGTGATGGTCTGTTGGTGTTCGTTTGGACATCTGTGGGTGTCACATTGTCTGTAACGTGGGTGCATGCTTCTCATAATTCATGCCTCTGATATTGTGGATTGGAACTTTTCCATTTATGGACAGACAGCCATCGCTACGATCGGAGAGCAAGTTGAGAATAGCATGTGATGGATTAGTTTTGCTTTGCAAAGCCCAGTGCCAAATGAATAGTTGGTGTCATTGCCTTCTCCCGCTATAGAAACACTAGTTTTCCTGATTTAAGGGATTTTGACTGTTAGTGGAATGAAGGCAAGCTGATATTTAAGGAAAAGATGAATTCATTTGCTGGATTTAAGCCATTATTGCCACTGGCTTTTTAAGAGATCCCCAAAGGTTTGGACAAAGTCCGAACGACTCGCGTACACAACACCAGATAGAGCAAAGATCAGAGGGCCATTGTCATGGTCCTTGTGTGTCAGCACGTTATCCTCTCTGTCCATTCCTTCCGTCTTATAAGCTCGGTTCTTAATTAATGTGCTGATGGTGTACTTCGTGTTGGTTTGGCTTACTGACTTTGTTTGATCGAGTCTTGTTTAACTGAAAAATATATTAGAAATTGTTGGTTGTGTTTTAAAGGGTAAGGTATTGATTCTGTTTGTGTATAAGGGGTTTAATCTGGTTAAAGACAACTTGATAATGTCCCCTCGTGATTTACTATTAGAAGGTATTTTGTGCTAATGTATTCCTCCAAAAATGTATCACATACAAATACATATAGTTACTAatgtgtgtggtgggtgtggcTTATTTGTTCCACATGTCTAGACACGTATATATACTGCATTTGGGGATTATATTACTTCAAACTGCTCAGGAGTAGACATACCGCAAGTGCACGGGAAGAAAAAACACTTGCTTTTCATATTATATACATGTAAAACAATGATTCATAATAAATATGAAAATATTTATTGATGTTTCCAAATCCTAATTTACATTGCTTATTACATTCAGTGAAATGATCCGTTTCAACATCTGTAGTAGCAAATTCAGTAAAGCCGATTTTATTTTCATCTTTATGTCTCTTAAATGTTCCTCTGTTTTTTAATTGCTTTAACGTGATTCATTGTTTGCTTACAATAAAAGTCATTTATCCA
>XM_021557234.2
cTGCGGATAAACCCCACCGAAGAAGAATCCACAGACAGCTACTCAGATCTCGGACAAGTCAAGGGACGTAGAATACGTTTGTCAGCTGTCAGTGCACTTTACAGCCTGgtttcCATACAAAGGTGAAGTCGTCATTTCTGCTGTTGGCAGGATAGTAGTTTAAACAGAACACTCACAGACAACACAGCAGCAGACAGTTGTAGTTCCATCATGGCGGAGGATATGTTTTCCCTCATGAGTCTCGAAGACGAACTGAGCTGTAGCATCTGCCTCTGTGCTTTCGACTGTCCGGTGACAATTCCATGTGGACACAACTTTTGCCAAGAGTGTCTCCTAGAAACCTGGAAAGACAACTACAGCTGTCCACAATGCCGGACCCACTTCACCACCAAACCAGAGCTGAAGAAGAACACCGTTCTCAGCACTGTTGTGGAAACGTTCAAAATGAAGTCGAATAAAAGCGACCTCCCCAGTGAGGTGGGCGACTTAATCAAGTGGGATGCGGTCAAGATGGAGCCCAAAGAGGTGGCTATCTTGTGCGACACCTGTATGGAAGCCAAAGCATTCAAGACCTGCCTCACCTGTATGGCGTCATTCTGCCTTGAGCACGTGAGGCCTCATCATGAGAACCCAGTGTTTGGCGCGCATCAGCTGAACGAGCCTCTGGGCGACCTGCGCGACCGTATCTGCCCCGACCACCACAAGCTGATGGAGTTCTACTGTGTCCAACATGGCCGCTGTATCTGTGGTGTCTGTCTGCAGCAGGTGCATAAAGGCTGTACCTTCTCCAACCCTGATGAACAACGGGCACTGCAAGAGTCTGATTTGAGGGGCAAGTTGAGTATGCTGAATGGAAAGATTGACAAGAACCAGACTGTCATCTCTCAGATGAGTGACCAGCAGAGCAAGTTGAAGGACTCTGCAGCCAGCAGGAAGAGAGCTCTGGAGGACGAGTACCGCCAAATCCGGGAGCTGCTGGACCGTGATGAGCGTGAGGCTCTGAACACCGTGGACCGCGAGCAGGAGAGCGCTCAGACCAAACTCCAGAACCTCATAAAGAAGTTCAACCAGAACATTGCGAAGCTTAGTGCGGCAAAAGATGGCGTCGACAGCCTGCTCAGTCAGACTCAGACCGTGGCTTTTCTACAGGCCTCAGTTGACATGCCGGCAGCGGTGGCCTTTGACCCCTATACCCCGAAGGTCAACCTGGACTCTAAGGCCTTGGCAGCCTGGCATGCCTACTCTGCAGTCCTGAGGGAGCATCTCACATTTGTACTGAAACAGCCTGTAGAGGCCAGACTGCAGATACtcaaaccagCTGAGAGGTTTGCTCCTCCTCTGCTGCCAAACTTCTATGAAATGGGAGGCATGCCACCACCAGGTCACCAGAGAATGCCTCGATCCCACAGCCCAGGAGCCCCCCTCAGGGCAAACCAGAGGAAGAAGCCTCCACAAGATTCAAACCGAGAGAGAAAAAATCCCCAAAAGCCACCTAATGCTCCCAGAGAGTTTGCCACTCCTGTTCCACACACACCAAGGGACCACCCCAGAGGACAATCAGCAGAACCCAGACCCAGGAACAGGGAGGACCCAGGACAACCAAGTGTTCTCCCAAGTATCACGTCTGCAGCAAAACGAAATGACCTTCTGCAATATGGCACGGTTCTCACCTTTGACCTCAAAACAGCCCACAAGCGCATCTCCCTCACAGAGAACATGACCGTGGCCTCTGTGTCAGACGAGCCCACCCCTTACCCCGATGGCCCCGCCCGTTTCTCCGTCTGCAGCCAGGTGCTCACTTCCAAGGGCTTCTCCCGCGGCCGCCACTACTGGGAGGTTAAGATGAGCAGCAACAACTTCACCGGCATCGGCCTGGCCTACAACAGCATCGACCGGAAGGGTCCGGCTAGCCGGCTGGGGCGTAACGCCCAGTCCTGGTGCGTGGAGTGGTTCAACGTCAAGCTGTCGGCCTGGCACGCCAGCAGTGAGACTGTACTGCAGAACCCGAATCCGACCCGCGTCGGCGTGCTGCTGGATTGCGAGGAGGGAACGGCCACTTTCTATAACGTACAGGACCGGGCATACCCGTTCCATACGTTTGTGTTCCAGTTCGCCGAGGCAGTGTACCCGGCGTTCTGGCTCTTCTCCAGCGGCTCGTCTGTTAGCCTGTGCAAGCTGCAGTCTTGAGAAGTTAACACACATTCTTCTCCCTCGCAAATAATTAGAATATACAGCCTCTGGGTCAATAAATGACTTAATCATACTGATATTGGGAACTTGTATCTTAAAGGTTATTATTTGGTTGTAGTTACTGGCTTTAGTAATAATGCAGTGTAGGTCATATCATTTTGGACTTTGGTCTCTTGTAACTGCAGCAACCTCTAAACAGGCAGCATTTGTTAATCAGTAACTAATGAAAACTAAGCACTTGCATACAGGTAAAGGAACATTACAAATTATTGTACAATATTATTGTATTGTCAAAAGCATGATTGACATCCTTactaccttttttttttactgctgttGTGATGTCAGCAGCATGCCGTGAAAGGAATTGATTTATTCCTTAATGGTTCATCAGACATAGCGAGTTACATTGGCTGGATAGAAGGAATTAGCTGACATTGTGATCATTCATGTCTGATTCGCAAGTGGTTACGTGACGTGCTATAGGCACGACTTACAAACAGAACTACTAAGTGGTATTTGAACCAGGCGAATGAGTTCTTTCTCCGGCTCTGCAGTCCTGGCTAAATGTCTTGATCATCCAGTTTATTTACAGATACATTTAAGTGGTCTGTGGGTAGCTGTTTACAGCCTGTTTTATCAGAGCTTATGATCTCTTGGTGTGGGTCTTGGCAGTACACAGTAATCACATGTAATATGCACAAAACGACATGAATAAACATGTTTAACATGTATGTTATCTGCTGTATGTGAACAGTACCACAACGTTCAGAAGGCCATGTACTGGCACACCTATTGCAAGAGTGTGGATGGCTTTTGCAGGTGTTAGGCATCCCCGCATTAGGGAATGTCATATCCAATAACACCACTGGATATAGAGAATCAATGAATCGAACAGAAAAGCATCCACATTATTCTTGATACCCCCAAAGGAAAAGTGGGTATCGTTCCCTTTTTTTCTTGATCTAATACATTTCGCTACAGTGTTTCACATAGAGCCTAGAAGTGAAGGGGGTGCAGTGTGAGGATGTGCTGAAAGTGCTTCCTGACACTGCTACTAGGACATTGCTACTACAGGCTTGATAGAACCTAGCCTGGTTGCCAGATCTGCATTTGTTTTAGAATTACAGTGAACAGGGCAGAGGAGTTGGTTGATCTGGCAACCGGGCTAGATAGACCCAGCCTGGCCCATAAGAACAAGCAGAGGTCATTTAGACCCTGTGAACAGGAGTTGTTCCAACTCTGTGGGTTTTGTAAATAGGGATGATTTAGGGCTGGGGTTTTTCCTGTCTGTGACCAGACAaaagaaaaactctgggcccAAGTTATAGCTAATTTAGCTACATATCTGTAGCACAGTGATGGTCTGTTGGTGTTCGTTTGGACATCTGTGGGTGTCACATTGTCTGTAACGTGGGTGCATGCTTCTCATAATTCATGCCTCTGATATTGTGGATTGGAACTTTTCCATTTATGGACAGACAGCCATCGCTACGATCGGAGAGCAAGTTGAGAATAGCATGTGATGGATTAGTTTTGCTTTGCAAAGCCCAGTGCCAAATGAATAGTTGGTGTCATTGCCTTCTCCCGCTATAGAAACACTAGTTTTCCTGATTTAAGGGATTTTGACTGTTAGTGGAATGAAGGCAAGCTGATATTTAAGGAAAAGATGAATTCATTTGCTGGATTTAAGCCATTATTGCCACTGGCTTTTTAAGAGATCCCCAAAGGTTTGGACAAAGTCCGAACGACTCGCGTACACAACACCAGATAGAGCAAAGATCAGAGGGCCATTGTCATGGTCCTTGTGTGTCAGCACGTTATCCTCTCTGTCCATTCCTTCCGTCTTATAAGCTCGGTTCTTAATTAATGTGCTGATGGTGTACTTCGTGTTGGTTTGGCTTACTGACTTTGTTTGATCGAGTCTTGTTTAACTGAAAAATATATTAGAAATTGTTGGTTGTGTTTTAAAGGGTAAGGTATTGATTCTGTTTGTGTATAAGGGGTTTAATCTGGTTAAAGACAACTTGATAATGTCCCCTCGTGATTTACTATTAGAAGGTATTTTGTGCTAATGTATTCCTCCAAAAATGTATCACATACAAATACATATAGTTACTAatgtgtgtggtgggtgtggcTTATTTGTTCCACATGTCTAGACACGTATATATACTGCATTTGGGGATTATATTACTTCAAACTGCTCAGGAGTAGACATACCGCAAGTGCACGGGAAGAAAAAACACTTGCTTTTCATATTATATACATGTAAAACAATGATTCATAATAAATATGAAAATATTTATTGATGTTTCCAAATCCTAATTTACATTGCTTATTACATTCAGTGAAATGATCCGTTTCAACATCTGTAGTAGCAAATTCAGTAAAGCCGATTTTATTTTCATCTTTATGTCTCTTAAATGTTCCTCTGTTTTTTAATTGCTTTAACGTGATTCATTGTTTGCTTACAATAAAAGTCATTTATCCA

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557233.2 False 4735 mRNA 0.46 11 22580737 22596273
XM_021557234.2 True 4684 mRNA 0.46 10 22580737 22596273

Neighbor

gene id symbol gene type direction distance location
LOC110485964 LOC106588395 coding upstream 11929 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 38491 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 123733 22453773 ~ 22457004 (+)
LOC110485960 LOC106564900 coding upstream 129186 22448170 ~ 22451551 (+)
LOC110485959 LOC106588356 coding upstream 139846 22433438 ~ 22440891 (+)
c13h17orf67 LOC106564992 coding downstream 9983 22606256 ~ 22610371 (+)
LOC110485978 LOC106564882 coding downstream 484390 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 733961 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 770932 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 806123 23402396 ~ 23441245 (+)
G1154445 NA non-coding upstream 6347 22574107 ~ 22574390 (+)
G1154443 NA non-coding upstream 9753 22570784 ~ 22570984 (+)
G1154436 NA non-coding upstream 35369 22545035 ~ 22545368 (+)
G1154434 NA non-coding upstream 39799 22540454 ~ 22540938 (+)
G1154430 NA non-coding upstream 46757 22533069 ~ 22533980 (+)
G1154480 NA non-coding downstream 60908 22657181 ~ 22657423 (+)
G1154818 NA non-coding downstream 71619 22667892 ~ 22668152 (+)
G1154821 NA non-coding downstream 74337 22670610 ~ 22670828 (+)
G1154850 NA non-coding downstream 106512 22702785 ~ 22703392 (+)
G1154861 NA non-coding downstream 125869 22722142 ~ 22722360 (+)
G1154412 mcoln1 other upstream 68997 22511379 ~ 22511740 (+)
G1154335 NA other upstream 124388 22439636 ~ 22456349 (+)
G1154234 NA other upstream 421308 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 971908 21607492 ~ 21608829 (+)
LOC110485931 LOC106564932 other upstream 1366125 21208787 ~ 21214615 (+)
G1155006 LOC100136012 other downstream 362659 22958932 ~ 22959351 (+)
pitpnc1a LOC106585713 other downstream 915653 23511706 ~ 23591433 (+)
LOC110485992 LOC106585723 other downstream 999645 23595876 ~ 23608606 (+)
G1156089 NA other downstream 1402373 23998646 ~ 24003968 (+)

Expression


Co-expression Network