LOC110485970 (LOC106588430)


Basic Information

Item Value
gene id LOC110485970
gene name LOC106588430
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22627746 ~ 22632364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557239.2
ACGTCAATGGCTCTTTGCGTTAACAGTTTTCTGCGACCCCTTCTCGTGTGCAAAGCAAAACGTATCGCACTGCTACTGACAACGAATTCCAAAtagagtgagagggaaagagagggaagatcGGAGAGAAGGGAAATCTCCCGTATTAATTTGAACGACGGAAAAACAGCGCACACGGGGGAAGGGTGACATTTTCTACAGGGATTGGAAGAGAAACCTTCCCTTTGCATCGAAAATGGAGCTACCCGCCGCCGGAGAGCACGTATTTGCGGTGGAGAGCATCGAGAAGAAGCGGAATCGAAAGGGGAGGATGGAATACCTAGTCAAGTGGCGAGGATGGTCTCCAAAATATAACACGTGGGAACCAGAAGAAAACATTCTCGACCCGCGGTTGCTTGACGCTTTCCAAAACAGGGAGAGATACGAGCAGCTTATGGGATATCGCAAAAGAGGGCCAAAGCCAAAGCACCTGATGGGCCAGGTCCCTTCCTTTGCCCGGAGATCCAGCGTCCTCTCAGGCCTTCAGGAGACCACCCTGGACGAGGACAACCGGCAGCAAGTGGACCCCATCCAGACAGTGCGCTCGCAGACTCAGCAGTACCAGCTGAACAGCAAGAAGCACCACCAGTACCAGCCCCTGCTGGCCAAGGAGAGGGAGGCCGAGCAGCAGGCCAACGGAAAGAAGAAGCTCTACTACCAGCTCAACAGCAAGAAACATCACCACTACCAGCCTGACCCCAAGATGTACGACAGCACCCAGTGCATGAAGCCAAGGGAGGCCACCAAAGCTCCGGAACTGCCCACCAACCACAGCTGGAACCTGCCTCCCGCGCTGCAGCAGAAGTGGGTCCGGGACAAGGACTCTGGTTGCCTGAGCAAAGTCAAGGATATCACCATGGAGCTAAAGAAGCTTCCGGCTCACCTCAACGGCCCCAGTGGCGAATCGGAGCAGAGCAAGGCCACGGCCAAAGAGGACGCACCGCTGCTGGAGGCCGACAGTGTCAGCGACAGCAAGCTGAAGATCGTCAAGAACAAAAACAAGAACGGACGCATCGTCATTGTCATGAGCAAGTACATGGAGAACGGCATGCAGGCGGCGAGGATTAAAAACGGAGATGTGGAAACCCTTGACGAGCCGCAGCCGgacaatgatgatgatgctgcAGAAAATCAACTTGAAAAGATGAGGCTCGTCCAGAAACTGGGTCTCACCAACGGATTTGCGAAAGACTGCAACAAAGGGTCTAACAGATCTAACGTATTTAAGTGTCCTGCTGACAAGGTCGACTCGCCCAAAATGGGGCTTAGTGCGACAGAGCAGAATAAACATTTCAATGTCAGGGTTCAGAAGGAGGCTACAGAGGATCAGCCCCTGCAGCTGACCAACAAACCTAACCTTGCCCCTTGGCCCATTGAGATGGGGGTTCATAGGACTCAGCCAGGAAAGGGCTCTTCTCCAGCCCTCAAACGTCACCTTTCGGAGGCAGACAAGGGCGAGGACCGGGGTGGCTGTAAACAGTTTCTAAACTCCCGGAGTATCAGTATACCCTGCACTGTGTCCTCACCTCCTCAAAGCAACTCCACGGACCAAAATGGCCACCATAGCCACAATGGCCAGCGGGACTACGACTTCCTGGAGTCTAACCAGGACGAGCCCATGGACCTCAGCTGTGTGAGGTCCAGACGGGAGGCTCCAGTTCCCACAGAGACACAGGTGGCTCCTTCTGCCGAGGAGGAGAAGACTGCCGAACAGACAAAACCGCCATTGGCTAtcacaacagaacagactgtggaGGAGGAGCCTTTTCCTTCATTCAAGCCTTTCCTTGGGAATATAGTCATCACGGATATTACAACAAACTGTCTCACGGTGACATTTAAGGAATACGTTACAGTGTAACGAAGCTGACAAAAGACGATCTGAGGACGAGGGATTAACAGCAACTGTGTGAATTTGTACAAATGTGTGTTGGAACATATTGGTATTTTCAGATGTTTGAATGTAAATAACAACCTTTAAAGTTTG
>TU1316946
GCAAAACGTATCGCACTGCTACTGACAACGAATTCCAAAtagagtgagagggaaagagagggaagatcGGAGAGAAGGGAAATCTCCCGTATTAATTTGAACGACGGAAAAACAGCGCACACGGGGGAAGGGTGACATTTTCTACAGGGATTGGAAGAGAAACCTTCCCTTTGCATCGAAAATGGAGCTACCCGCCGCCGGAGAGCACGTATTTGCGGTGGAGAGCATCGAGAAGAAGCGGAATCGAAAGGGGAGGATGGAATACCTAGTCAAGTGGCGAGGATGGTCTCCAAAATATAACACGTGGGAACCAGAAGAAAACATTCTCGACCCGCGGTTGCTTGACGCTTTCCAAAACAGG

Function

NR:

description
PREDICTED: chromobox protein homolog 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557239.2 False 2026 mRNA 0.52 5 22627746 22632364
TU1316946 True 361 lncRNA 0.50 3 22630650 22632310

Neighbor

gene id symbol gene type direction distance location
LOC110485969 cbx8 coding downstream 11667 22612185 ~ 22623151 (-)
LOC110485966 LOC106588413 coding downstream 22773 22597440 ~ 22604973 (-)
trappc5 LOC106588386 coding downstream 94761 22530805 ~ 22532985 (-)
LOC110485962 LOC106588379 coding downstream 97885 22507917 ~ 22529861 (-)
si:ch211-214c7.4 LOC106588372 coding downstream 125671 22462260 ~ 22502075 (-)
LOC110485971 LOC106588435 coding upstream 97309 22728553 ~ 22745299 (-)
ccdc40 ccdc40 coding upstream 122111 22754475 ~ 22766155 (-)
LOC110485973 LOC106588447 coding upstream 133937 22766301 ~ 22834643 (-)
LOC110485111 LOC106588440 coding upstream 205621 22837985 ~ 22838908 (-)
LOC110485974 LOC106585623 coding upstream 283250 22915614 ~ 22993515 (-)
G1154754 NA non-coding downstream 1881 22624760 ~ 22625865 (-)
G1154740 LOC106564896 non-coding downstream 43562 22583464 ~ 22584184 (-)
G1154777 NA non-coding downstream 45647 22580758 ~ 22582099 (-)
G1154776 NA non-coding downstream 46997 22580545 ~ 22580749 (-)
G1154805 NA non-coding upstream 22926 22655290 ~ 22655538 (-)
G1154807 NA non-coding upstream 25581 22657945 ~ 22658228 (-)
G1154808 NA non-coding upstream 25963 22658327 ~ 22658540 (-)
G1154817 NA non-coding upstream 35068 22667432 ~ 22667687 (-)
G1154820 NA non-coding upstream 37411 22669775 ~ 22670131 (-)
LOC110485947 LOC106588570 other downstream 554321 22069722 ~ 22073496 (-)
LOC110485936 LOC106588110 other downstream 1162480 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 1367103 21247188 ~ 21260739 (-)
G1153336 NA other downstream 1639973 20984731 ~ 20987773 (-)
LOC110485982 LOC106567469 other upstream 583819 23216183 ~ 23220256 (-)
G1155674 NA other upstream 593850 23226214 ~ 23250232 (-)
G1155782 LOC106585672 other upstream 770015 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 967143 23599507 ~ 23601690 (-)
LOC110485996 LOC106586353 other upstream 1074393 23699036 ~ 23707634 (-)

Expression


Co-expression Network