XLOC_030234


Basic Information

Item Value
gene id XLOC_030234
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 34643447 ~ 34797351 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061740
GAGTAGCTCAGCACACTTCAAACCGATCCCTGCGTAACCACGTGATTAACATCAAACTATGAAGGATGTTCGTTTATATAACTTTAGGATTGGATATTTTGGGGTGACAATTACAAATTACACAATGGAATACAAAGCGGGATGGCCCGTGGAGAGATTCGGCAGACACGAGGATGCTGCTGCATGgtGCAGCTGACCGTAAGGCCACTCTAATTGCAGAGGACACTTTCTCCTTCGCTTCCTCTCTCGCTCTCTTGTGGCGTCTTTTCTTCATGAAAGCAAAGGTCTGAGATAGACAGgtctcagatgagtggaCTGCTGGAGGAGGATGGgctggggtttttcttgtttttagttttttttttaatgtgtttgctttcatttcaaattaaaatgtacttataTTGACC
>TCONS_00061443
AAACCGATCCCTGCGTAACCACGTGATTAACATCAAACTATGAAGGATGTTCGTTTATATAACTTTAGGATTGGATATTTTGGGGTGACAATTACAAATTACACAATGGAATACAAAGCGGGATGGCCCGTGGAGAGATTCGGCAGACACGAGGATGCTGCTGCATGGCAAAACTTCACAGAAATATACTGTTTGGAATTGTATTTGAGTTCAAATACAAAAGGAGGTGAGGAAACCTcagaggaagagagagaaaaCGCCCTGCTTGAGTAATGGAACAGTCACTGGAGCATGAAGGTAAAGGCAGAGTGCATATTGTTGAAGACTGATAGAATTATCCTGCCACAACAAAACACAACGTGAGAACGAACTCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061740 False 410 lncRNA 0.43 3 34643447 34797351
TCONS_00061443 True 376 lncRNA 0.42 2 34643466 34789073

Neighbor

gene id symbol gene type direction distance location
XLOC_030233 enc1 coding upstream 4823 34622320 ~ 34638624 (+)
XLOC_030232 gfm2 coding upstream 42737 34578479 ~ 34600710 (+)
XLOC_030231 aif1l coding upstream 67945 34549365 ~ 34575502 (+)
XLOC_030230 lamc3 coding upstream 100967 34407763 ~ 34542480 (+)
XLOC_030229 NA coding upstream 348374 34293261 ~ 34295073 (+)
XLOC_030236 NA coding downstream 31453 34828804 ~ 34837166 (+)
XLOC_030237 BX530075.1 coding downstream 123044 34920395 ~ 34921911 (+)
XLOC_030238 ankra2 coding downstream 184233 34981584 ~ 34987273 (+)
XLOC_030239 foxd1 coding downstream 200412 34997763 ~ 34999553 (+)
XLOC_030240 CR377210.1 coding downstream 323697 35121048 ~ 35127014 (+)
XLOC_030228 NA non-coding upstream 706027 33935619 ~ 33937420 (+)
XLOC_030221 NA non-coding upstream 1304978 33332449 ~ 33338469 (+)
XLOC_030216 CR855258.1 non-coding upstream 1649556 32993786 ~ 32993891 (+)
XLOC_030213 CR925757.2 non-coding upstream 1756849 32886472 ~ 32886598 (+)
XLOC_030243 NA non-coding downstream 718569 35515920 ~ 35527121 (+)
XLOC_030248 NA non-coding downstream 1206610 36003961 ~ 36177578 (+)

Expression


Co-expression Network