ccdc40 (ccdc40)


Basic Information

Item Value
gene id ccdc40
gene name ccdc40
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22754475 ~ 22766155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940632.1
CTAGCTGTTTTTAGTTTGCAAATTCAATTTTGTACTACGAGCTGCAGGATTATTTGTTGTTGCTGAAGAGGTGATAAAGCAGCCGTAAGGTTGAGTAACTTGTGCATTTCGAGAACAGTTAAAACATTCTGGTATTTTAAGCTGTTAGGtaatctagctaacgttagcgttaATAGCGTATTAACGAATAAGCACGCTAACTTCAAGGCAAGTGGATAGCAGCATTCCACGGGAAACATTATGCGCGTAGTAGGCATAGCCATCATATAGTTCTGAAGAGGTAACTCCTTAACTCAAGAAGCAGGTAAGAGCAGGTGAcattatttagcagacactcttatccagagcgacttacaggaacaATTAAGGTTTAAGTGcgttgctcaagggcacatacactgatttttcacctagtcggcttggggattcaaaccagcaacctttcggttactggcgccaaagctcttaaccgctaggctacctgccaacatGACTGCAATGAAATCCAATGTCGCTGTCACAAAGGCAACCTTCTTGTAGTGCTGACAGAGTCAACCATCTTGGTTCCCACCGAGTCCAATGGAGGGTGGAGgaagtgagggaggaggagaagaggagaggaggggaacccCGCCACAGGAGGAGGGGAAGTACGTTGAACAGCCAGGTGGTGCTGGCGAGGCAGCAGAGGACTCTGGGGTTACTGTACTACCTGGGCAGGAGGGTGGATCAGCAGAGCAGTCAGACAGGGAGCAGGCCGAGGCGGGTGCTGGTTACCCAGTGTCACAGTCAGGAAACAGTGGTACAGGCGCAGCCTTCAACCCCGCCAGCAACTCAGATAACGGAACGATGCCCTTGCCGCCTCACCCCTCGTTGCACCTCTCAGTCCCCCTCTCCGACAGCGATGCGGACGGGTTACGCAGTGCGGCGGATGAGGGCGATGAGGAAGATGAGCTCATCGTGCTGGACCCTGAACACCCGCTGATGAGAAGGTTCCAGACTGCACTGAGGAACCACCTCCACAAGCAACTGGAGAGACTCAACATGGAGTTGCGCGAGAAGATGGCCATAGAGAGGTCTGAGAGCGACCACCGAGAGGAGCTGGGTGTGGAGCTGTACGGCGTACAGCAGGAGCTGGCCAGACTCCAGGCCTGTCTGGAGGGCCGTCACGAGACCAACGCGCAGGCGGCCGCACAGCGCAGACAGGCCCAGGATCAGCTGGAGGGGGTCCGAAGCCAGTACCGCACCACAGCCATCCAGGCCGGCAAGCAGAGGTCACACGTGTCCCAGCTGCAGAGTGAGGTAGAGAACCTGGCACTGCGTCTGTTCTACATGCAGGAGGTTAACGCCGACCTGCGCTCTGACATCACGGCCATGAAGAACGCCTCGCGCAAGGCCTACTCCGAGAAGACCCAGGCAGAGGAGCAGAAGCACAAACAGgaCTTGTATGTGGAGCGGTTGACCAAACACATGGAGCGGCTGACGGAGCAGATAGCTCTGTATAAAGTACAGACCATCGCCCAGTCTGAGGAGACCCAGGCAGCCAAGGAGGCCCTCTCTGAGGCCCAGATGGAGATGGACTCTTTGGGGATGGAGAGGAAGCAGCTGCTGCAGCAGTGGAACAGCAGCCTGGTGGGCATGAGGAGACGAGACGACGCCTACACCGCCATGCTGGAGGCTCTACGCGCGGCCACCCACCAGGTCCGCTCTCTAGACACCGAGATCGAGGGCTTCAAGAAGTCCATCACGCAGGAGGGGGAGCGCAATGAGCTGCTGACAGTACTACTGAACCGGACCCAGCTGGACAGCGCCACCTCCAGGAAGCTGATCTCCCACAGCCACAGCCAGCAGGAGGCGCTGCAGGTCCAGTACAGCATCTACATGAGGACGCTGCAGGAGACCGAGCAGACGCTGCAACGCGTTAACACGgaGTGTGGGGTGCGCCAGGTGGAGGTGTCCTCCCTGAGGAAGCAGACGGAGAAGGAGTGGGTGCGGCGCATCGAGCTGGAGGACCGCATCATGTCCAAGATGCAGGAGCATCTCACCCACGACAAGGCCACCAAGTACTCCCGACGCCTCACCGACAAGATGGCCGCCCACAAGAGGGAGAAGGAGACCCAGCTGTCCCGGCTGGAGAACGAAATGGCGGCGGTGACGCTGGAGAGCAGTGACCTCACCCTGCGCCTGGAGGGTCTGGCCCGCACCCTCGCCTCGCTGGAGACGGAGATGAGCCGCCGCAACGAACTGCTCGGCGCCAGCGAGGCCAGGATCACCAAGCGCGTCACCGTCATCGAGCGCAAGCAGGCCACCATCAACGTTTACAACAAGAAGATTGAGCAGCTCGTCGCCAGCACTGGGCACGAGGACCTGGGCCCGTTGGAGATCCAGGCCAGTACTCTGACCAAGCAGCTGGAGGGGGTGGCAGGAGAGATcaaggagcagcagcagctctgGCTGCGGCAGCAGGGGGAACTGGTGAGACTGACCCAGGAGAAACAGGCCCGGAGCGCCGCCCTGCTCACACTGCAGACCCAATTCACCATCCTACAGCAGAGGAAAGTCCGCACCGAGAGTGAGATACAACAGGAGCAACGGGAGCAGGCCGAGCTGGAGAGACACATGAAGGAGCTGATGGCGGACATGTTGAAGCTCAACTCCCTGCTGAGTGAGAACAGGCATCTCCACCAGGCCCTGGAGCAGGGCAACGTTGTCATGGAGACTGACTTCCTGCACAGACTCAAGGAGGCGGAGAGAAACTCCATTGAGACGCAGATGAAGCTAGAGAGGATCCAGGAGGAGAAGGacaggctgttcaacagtctggtggAGTCAGAGCGTCAGATCATGCTGTGGGAGAAGAAGACCCAGCTGGTGAGAGAGACCAGGTCGGCTGTGGACTCTGAGGTGGGCCAGGGAGACATCCGCACCATGAGGGCTGAGATCCACCGGATGGAGGTGCGATACGGTCAGCTGATGAAGCAGCAGGAGCGCCTactgagggagatggagggagtggtGGCTCGCAGGGAGACTATCGTGATGCGCAGTGAGGCCCAGGCACGAACCGACCGCAAGCAGCCCACTCACACCGACTTCCACGGCATCCTGCAGGGCCTGCGTCGGAAGATACTGGACACACAGAAGCAAGCGGAGGAGTGTGACGGGGTCCTCAGGGAGCTGCAGCAGGGCCAGTCCAGTCTGAGCTGCAGTCTGCGGGACAAACAGCTGCAGCTGGGAGAGCTCCACAGTGCCAGAACTGTCCTCACCTCAGACTTCCAATGTCTGCAGGACACCAAGGAGAGGaaccTGGCCCGTCTGGTCTCCCTCCAGGGCCATGCCAAGCAGCTCCAAGCGGTGCGTGAGGGTCGCTACAGCGCCCTGTCCACCAGCGAAGCCTTGGAGCCTGCGTTGCAGAGGCAGGAGGAGCGTCTGCACGCTGTGACCACCATCCTGCACCGTGTCCAGCAGGAGTTCCCCCAGCACCAGGGGGCGCTACGACGCCTCTCCCTAGCCCTGGCCGCGCGCCTGCAGACTCCGATTGGTCAGGAGACCCACTGACTATTACATGACTGAAAACCCCCATCATAGGATTACTCACGGAGTAGATTGGAGATAGAGATCCATCATAGTTGTCGGGTATTACTGCTCTATGGTGTTCCATGTTACTCTGGCTGTTAGGATTAGGGAGCTGGACTTGGGGTGGAAGCTCTCCTCCTGGCCATGTTTGGGCAATTTTGGTTTTCagaatatttcaatttatttttgtttcactTGATAGAATGAAGAGTTgatttaatatacagtatacacgGATATCCTACCAGCGTGTGAAAATAATATTGTCCATGGATAAACTGAAGATACACATAAATAAACAATGAAAGCAA
>XM_036940633.1
CTAGCTGTTTTTAGTTTGCAAATTCAATTTTGTACTACGAGCTGCAGGATTATTTGTTGTTGCTGAAGAGGTGATAAAGCAGCCGTAAGGTTGAGTAACTTGTGCATTTCGAGAACAGTTAAAACATTCTGGTATTTTAAGCTGTTAGGtaatctagctaacgttagcgttaATAGCGTATTAACGAATAAGCACGCTAACTTCAAGGCAAGTGGATAGCAGCATTCCACGGGAAACATTATGCGCGTAGTAGGCATAGCCATCATATAGTTCTGAAGAGGTAACTCCTTAACTCAAGAAGCAGGCAACCTTCTTGTAGTGCTGACAGAGTCAACCATCTTGGTTCCCACCGAGTCCAATGGAGGGTGGAGgaagtgagggaggaggagaagaggagaggaggggaacccCGCCACAGGAGGAGGGGAAGTACGTTGAACAGCCAGGTGGTGCTGGCGAGGCAGCAGAGGACTCTGGGGTTACTGTACTACCTGGGCAGGAGGGTGGATCAGCAGAGCAGTCAGACAGGGAGCAGGCCGAGGCGGGTGCTGGTTACCCAGTGTCACAGTCAGGAAACAGTGGTACAGGCGCAGCCTTCAACCCCGCCAGCAACTCAGATAACGGAACGATGCCCTTGCCGCCTCACCCCTCGTTGCACCTCTCAGTCCCCCTCTCCGACAGCGATGCGGACGGGTTACGCAGTGCGGCGGATGAGGGCGATGAGGAAGATGAGCTCATCGTGCTGGACCCTGAACACCCGCTGATGAGAAGGTTCCAGACTGCACTGAGGAACCACCTCCACAAGCAACTGGAGAGACTCAACATGGAGTTGCGCGAGAAGATGGCCATAGAGAGGTCTGAGAGCGACCACCGAGAGGAGCTGGGTGTGGAGCTGTACGGCGTACAGCAGGAGCTGGCCAGACTCCAGGCCTGTCTGGAGGGCCGTCACGAGACCAACGCGCAGGCGGCCGCACAGCGCAGACAGGCCCAGGATCAGCTGGAGGGGGTCCGAAGCCAGTACCGCACCACAGCCATCCAGGCCGGCAAGCAGAGGTCACACGTGTCCCAGCTGCAGAGTGAGGTAGAGAACCTGGCACTGCGTCTGTTCTACATGCAGGAGGTTAACGCCGACCTGCGCTCTGACATCACGGCCATGAAGAACGCCTCGCGCAAGGCCTACTCCGAGAAGACCCAGGCAGAGGAGCAGAAGCACAAACAGgaCTTGTATGTGGAGCGGTTGACCAAACACATGGAGCGGCTGACGGAGCAGATAGCTCTGTATAAAGTACAGACCATCGCCCAGTCTGAGGAGACCCAGGCAGCCAAGGAGGCCCTCTCTGAGGCCCAGATGGAGATGGACTCTTTGGGGATGGAGAGGAAGCAGCTGCTGCAGCAGTGGAACAGCAGCCTGGTGGGCATGAGGAGACGAGACGACGCCTACACCGCCATGCTGGAGGCTCTACGCGCGGCCACCCACCAGGTCCGCTCTCTAGACACCGAGATCGAGGGCTTCAAGAAGTCCATCACGCAGGAGGGGGAGCGCAATGAGCTGCTGACAGTACTACTGAACCGGACCCAGCTGGACAGCGCCACCTCCAGGAAGCTGATCTCCCACAGCCACAGCCAGCAGGAGGCGCTGCAGGTCCAGTACAGCATCTACATGAGGACGCTGCAGGAGACCGAGCAGACGCTGCAACGCGTTAACACGgaGTGTGGGGTGCGCCAGGTGGAGGTGTCCTCCCTGAGGAAGCAGACGGAGAAGGAGTGGGTGCGGCGCATCGAGCTGGAGGACCGCATCATGTCCAAGATGCAGGAGCATCTCACCCACGACAAGGCCACCAAGTACTCCCGACGCCTCACCGACAAGATGGCCGCCCACAAGAGGGAGAAGGAGACCCAGCTGTCCCGGCTGGAGAACGAAATGGCGGCGGTGACGCTGGAGAGCAGTGACCTCACCCTGCGCCTGGAGGGTCTGGCCCGCACCCTCGCCTCGCTGGAGACGGAGATGAGCCGCCGCAACGAACTGCTCGGCGCCAGCGAGGCCAGGATCACCAAGCGCGTCACCGTCATCGAGCGCAAGCAGGCCACCATCAACGTTTACAACAAGAAGATTGAGCAGCTCGTCGCCAGCACTGGGCACGAGGACCTGGGCCCGTTGGAGATCCAGGCCAGTACTCTGACCAAGCAGCTGGAGGGGGTGGCAGGAGAGATcaaggagcagcagcagctctgGCTGCGGCAGCAGGGGGAACTGGTGAGACTGACCCAGGAGAAACAGGCCCGGAGCGCCGCCCTGCTCACACTGCAGACCCAATTCACCATCCTACAGCAGAGGAAAGTCCGCACCGAGAGTGAGATACAACAGGAGCAACGGGAGCAGGCCGAGCTGGAGAGACACATGAAGGAGCTGATGGCGGACATGTTGAAGCTCAACTCCCTGCTGAGTGAGAACAGGCATCTCCACCAGGCCCTGGAGCAGGGCAACGTTGTCATGGAGACTGACTTCCTGCACAGACTCAAGGAGGCGGAGAGAAACTCCATTGAGACGCAGATGAAGCTAGAGAGGATCCAGGAGGAGAAGGacaggctgttcaacagtctggtggAGTCAGAGCGTCAGATCATGCTGTGGGAGAAGAAGACCCAGCTGGTGAGAGAGACCAGGTCGGCTGTGGACTCTGAGGTGGGCCAGGGAGACATCCGCACCATGAGGGCTGAGATCCACCGGATGGAGGTGCGATACGGTCAGCTGATGAAGCAGCAGGAGCGCCTactgagggagatggagggagtggtGGCTCGCAGGGAGACTATCGTGATGCGCAGTGAGGCCCAGGCACGAACCGACCGCAAGCAGCCCACTCACACCGACTTCCACGGCATCCTGCAGGGCCTGCGTCGGAAGATACTGGACACACAGAAGCAAGCGGAGGAGTGTGACGGGGTCCTCAGGGAGCTGCAGCAGGGCCAGTCCAGTCTGAGCTGCAGTCTGCGGGACAAACAGCTGCAGCTGGGAGAGCTCCACAGTGCCAGAACTGTCCTCACCTCAGACTTCCAATGTCTGCAGGACACCAAGGAGAGGaaccTGGCCCGTCTGGTCTCCCTCCAGGGCCATGCCAAGCAGCTCCAAGCGGTGCGTGAGGGTCGCTACAGCGCCCTGTCCACCAGCGAAGCCTTGGAGCCTGCGTTGCAGAGGCAGGAGGAGCGTCTGCACGCTGTGACCACCATCCTGCACCGTGTCCAGCAGGAGTTCCCCCAGCACCAGGGGGCGCTACGACGCCTCTCCCTAGCCCTGGCCGCGCGCCTGCAGACTCCGATTGGTCAGGAGACCCACTGACTATTACATGACTGAAAACCCCCATCATAGGATTACTCACGGAGTAGATTGGAGATAGAGATCCATCATAGTTGTCGGGTATTACTGCTCTATGGTGTTCCATGTTACTCTGGCTGTTAGGATTAGGGAGCTGGACTTGGGGTGGAAGCTCTCCTCCTGGCCATGTTTGGGCAATTTTGGTTTTCagaatatttcaatttatttttgtttcactTGATAGAATGAAGAGTTgatttaatatacagtatacacgGATATCCTACCAGCGTGTGAAAATAATATTGTCCATGGATAAACTGAAGATACACATAAATAAACAATGAAAGCAA
>XM_036940635.1
CTAGCTGTTTTTAGTTTGCAAATTCAATTTTGTACTACGAGCTGCAGGATTATTTGTTGTTGCTGAAGAGGTGATAAAGCAGCCGTAAGGTTGAGTAACTTGTGCATTTCGAGAACAGTTAAAACATTCTGGTATTTTAAGCTGTTAGGtaatctagctaacgttagcgttaATAGCGTATTAACGAATAAGCACGCTAACTTCAAGGCAAGTGGATAGCAGCATTCCACGGGAAACATTATGCGCGTAGTAGGCATAGCCATCATATAGTTCTGAAGAGGTAACTCCTTAACTCAAGAAGCAGTGCTGACAGAGTCAACCATCTTGGTTCCCACCGAGTCCAATGGAGGGTGGAGgaagtgagggaggaggagaagaggagaggaggggaacccCGCCACAGGAGGAGGGGAAGTACGTTGAACAGCCAGGTGGTGCTGGCGAGGCAGCAGAGGACTCTGGGGTTACTGTACTACCTGGGCAGGAGGGTGGATCAGCAGAGCAGTCAGACAGGGAGCAGGCCGAGGCGGGTGCTGGTTACCCAGTGTCACAGTCAGGAAACAGTGGTACAGGCGCAGCCTTCAACCCCGCCAGCAACTCAGATAACGGAACGATGCCCTTGCCGCCTCACCCCTCGTTGCACCTCTCAGTCCCCCTCTCCGACAGCGATGCGGACGGGTTACGCAGTGCGGCGGATGAGGGCGATGAGGAAGATGAGCTCATCGTGCTGGACCCTGAACACCCGCTGATGAGAAGGTTCCAGACTGCACTGAGGAACCACCTCCACAAGCAACTGGAGAGACTCAACATGGAGTTGCGCGAGAAGATGGCCATAGAGAGGTCTGAGAGCGACCACCGAGAGGAGCTGGGTGTGGAGCTGTACGGCGTACAGCAGGAGCTGGCCAGACTCCAGGCCTGTCTGGAGGGCCGTCACGAGACCAACGCGCAGGCGGCCGCACAGCGCAGACAGGCCCAGGATCAGCTGGAGGGGGTCCGAAGCCAGTACCGCACCACAGCCATCCAGGCCGGCAAGCAGAGGTCACACGTGTCCCAGCTGCAGAGTGAGGTAGAGAACCTGGCACTGCGTCTGTTCTACATGCAGGAGGTTAACGCCGACCTGCGCTCTGACATCACGGCCATGAAGAACGCCTCGCGCAAGGCCTACTCCGAGAAGACCCAGGCAGAGGAGCAGAAGCACAAACAGgaCTTGTATGTGGAGCGGTTGACCAAACACATGGAGCGGCTGACGGAGCAGATAGCTCTGTATAAAGTACAGACCATCGCCCAGTCTGAGGAGACCCAGGCAGCCAAGGAGGCCCTCTCTGAGGCCCAGATGGAGATGGACTCTTTGGGGATGGAGAGGAAGCAGCTGCTGCAGCAGTGGAACAGCAGCCTGGTGGGCATGAGGAGACGAGACGACGCCTACACCGCCATGCTGGAGGCTCTACGCGCGGCCACCCACCAGGTCCGCTCTCTAGACACCGAGATCGAGGGCTTCAAGAAGTCCATCACGCAGGAGGGGGAGCGCAATGAGCTGCTGACAGTACTACTGAACCGGACCCAGCTGGACAGCGCCACCTCCAGGAAGCTGATCTCCCACAGCCACAGCCAGCAGGAGGCGCTGCAGGTCCAGTACAGCATCTACATGAGGACGCTGCAGGAGACCGAGCAGACGCTGCAACGCGTTAACACGgaGTGTGGGGTGCGCCAGGTGGAGGTGTCCTCCCTGAGGAAGCAGACGGAGAAGGAGTGGGTGCGGCGCATCGAGCTGGAGGACCGCATCATGTCCAAGATGCAGGAGCATCTCACCCACGACAAGGCCACCAAGTACTCCCGACGCCTCACCGACAAGATGGCCGCCCACAAGAGGGAGAAGGAGACCCAGCTGTCCCGGCTGGAGAACGAAATGGCGGCGGTGACGCTGGAGAGCAGTGACCTCACCCTGCGCCTGGAGGGTCTGGCCCGCACCCTCGCCTCGCTGGAGACGGAGATGAGCCGCCGCAACGAACTGCTCGGCGCCAGCGAGGCCAGGATCACCAAGCGCGTCACCGTCATCGAGCGCAAGCAGGCCACCATCAACGTTTACAACAAGAAGATTGAGCAGCTCGTCGCCAGCACTGGGCACGAGGACCTGGGCCCGTTGGAGATCCAGGCCAGTACTCTGACCAAGCAGCTGGAGGGGGTGGCAGGAGAGATcaaggagcagcagcagctctgGCTGCGGCAGCAGGGGGAACTGGTGAGACTGACCCAGGAGAAACAGGCCCGGAGCGCCGCCCTGCTCACACTGCAGACCCAATTCACCATCCTACAGCAGAGGAAAGTCCGCACCGAGAGTGAGATACAACAGGAGCAACGGGAGCAGGCCGAGCTGGAGAGACACATGAAGGAGCTGATGGCGGACATGTTGAAGCTCAACTCCCTGCTGAGTGAGAACAGGCATCTCCACCAGGCCCTGGAGCAGGGCAACGTTGTCATGGAGACTGACTTCCTGCACAGACTCAAGGAGGCGGAGAGAAACTCCATTGAGACGCAGATGAAGCTAGAGAGGATCCAGGAGGAGAAGGacaggctgttcaacagtctggtggAGTCAGAGCGTCAGATCATGCTGTGGGAGAAGAAGACCCAGCTGGTGAGAGAGACCAGGTCGGCTGTGGACTCTGAGGTGGGCCAGGGAGACATCCGCACCATGAGGGCTGAGATCCACCGGATGGAGGTGCGATACGGTCAGCTGATGAAGCAGCAGGAGCGCCTactgagggagatggagggagtggtGGCTCGCAGGGAGACTATCGTGATGCGCAGTGAGGCCCAGGCACGAACCGACCGCAAGCAGCCCACTCACACCGACTTCCACGGCATCCTGCAGGGCCTGCGTCGGAAGATACTGGACACACAGAAGCAAGCGGAGGAGTGTGACGGGGTCCTCAGGGAGCTGCAGCAGGGCCAGTCCAGTCTGAGCTGCAGTCTGCGGGACAAACAGCTGCAGCTGGGAGAGCTCCACAGTGCCAGAACTGTCCTCACCTCAGACTTCCAATGTCTGCAGGACACCAAGGAGAGGaaccTGGCCCGTCTGGTCTCCCTCCAGGGCCATGCCAAGCAGCTCCAAGCGGTGCGTGAGGGTCGCTACAGCGCCCTGTCCACCAGCGAAGCCTTGGAGCCTGCGTTGCAGAGGCAGGAGGAGCGTCTGCACGCTGTGACCACCATCCTGCACCGTGTCCAGCAGGAGTTCCCCCAGCACCAGGGGGCGCTACGACGCCTCTCCCTAGCCCTGGCCGCGCGCCTGCAGACTCCGATTGGTCAGGAGACCCACTGACTATTACATGACTGAAAACCCCCATCATAGGATTACTCACGGAGTAGATTGGAGATAGAGATCCATCATAGTTGTCGGGTATTACTGCTCTATGGTGTTCCATGTTACTCTGGCTGTTAGGATTAGGGAGCTGGACTTGGGGTGGAAGCTCTCCTCCTGGCCATGTTTGGGCAATTTTGGTTTTCagaatatttcaatttatttttgtttcactTGATAGAATGAAGAGTTgatttaatatacagtatacacgGATATCCTACCAGCGTGTGAAAATAATATTGTCCATGGATAAACTGAAGATACACATAAATAAACAATGAAAGCAA
>XM_036940636.1
ACGGAAGTTAATCGTTTCCTAGCAACGCCTGGCCGGCTGACAAACAGAGTTCTGAAGAGGTAACTCCTTAACTCAAGAAGCAGTGCTGACAGAGTCAACCATCTTGGTTCCCACCGAGTCCAATGGAGGGTGGAGgaagtgagggaggaggagaagaggagaggaggggaacccCGCCACAGGAGGAGGGGAAGTACGTTGAACAGCCAGGTGGTGCTGGCGAGGCAGCAGAGGACTCTGGGGTTACTGTACTACCTGGGCAGGAGGGTGGATCAGCAGAGCAGTCAGACAGGGAGCAGGCCGAGGCGGGTGCTGGTTACCCAGTGTCACAGTCAGGAAACAGTGGTACAGGCGCAGCCTTCAACCCCGCCAGCAACTCAGATAACGGAACGATGCCCTTGCCGCCTCACCCCTCGTTGCACCTCTCAGTCCCCCTCTCCGACAGCGATGCGGACGGGTTACGCAGTGCGGCGGATGAGGGCGATGAGGAAGATGAGCTCATCGTGCTGGACCCTGAACACCCGCTGATGAGAAGGTTCCAGACTGCACTGAGGAACCACCTCCACAAGCAACTGGAGAGACTCAACATGGAGTTGCGCGAGAAGATGGCCATAGAGAGGTCTGAGAGCGACCACCGAGAGGAGCTGGGTGTGGAGCTGTACGGCGTACAGCAGGAGCTGGCCAGACTCCAGGCCTGTCTGGAGGGCCGTCACGAGACCAACGCGCAGGCGGCCGCACAGCGCAGACAGGCCCAGGATCAGCTGGAGGGGGTCCGAAGCCAGTACCGCACCACAGCCATCCAGGCCGGCAAGCAGAGGTCACACGTGTCCCAGCTGCAGAGTGAGGTAGAGAACCTGGCACTGCGTCTGTTCTACATGCAGGAGGTTAACGCCGACCTGCGCTCTGACATCACGGCCATGAAGAACGCCTCGCGCAAGGCCTACTCCGAGAAGACCCAGGCAGAGGAGCAGAAGCACAAACAGgaCTTGTATGTGGAGCGGTTGACCAAACACATGGAGCGGCTGACGGAGCAGATAGCTCTGTATAAAGTACAGACCATCGCCCAGTCTGAGGAGACCCAGGCAGCCAAGGAGGCCCTCTCTGAGGCCCAGATGGAGATGGACTCTTTGGGGATGGAGAGGAAGCAGCTGCTGCAGCAGTGGAACAGCAGCCTGGTGGGCATGAGGAGACGAGACGACGCCTACACCGCCATGCTGGAGGCTCTACGCGCGGCCACCCACCAGGTCCGCTCTCTAGACACCGAGATCGAGGGCTTCAAGAAGTCCATCACGCAGGAGGGGGAGCGCAATGAGCTGCTGACAGTACTACTGAACCGGACCCAGCTGGACAGCGCCACCTCCAGGAAGCTGATCTCCCACAGCCACAGCCAGCAGGAGGCGCTGCAGGTCCAGTACAGCATCTACATGAGGACGCTGCAGGAGACCGAGCAGACGCTGCAACGCGTTAACACGgaGTGTGGGGTGCGCCAGGTGGAGGTGTCCTCCCTGAGGAAGCAGACGGAGAAGGAGTGGGTGCGGCGCATCGAGCTGGAGGACCGCATCATGTCCAAGATGCAGGAGCATCTCACCCACGACAAGGCCACCAAGTACTCCCGACGCCTCACCGACAAGATGGCCGCCCACAAGAGGGAGAAGGAGACCCAGCTGTCCCGGCTGGAGAACGAAATGGCGGCGGTGACGCTGGAGAGCAGTGACCTCACCCTGCGCCTGGAGGGTCTGGCCCGCACCCTCGCCTCGCTGGAGACGGAGATGAGCCGCCGCAACGAACTGCTCGGCGCCAGCGAGGCCAGGATCACCAAGCGCGTCACCGTCATCGAGCGCAAGCAGGCCACCATCAACGTTTACAACAAGAAGATTGAGCAGCTCGTCGCCAGCACTGGGCACGAGGACCTGGGCCCGTTGGAGATCCAGGCCAGTACTCTGACCAAGCAGCTGGAGGGGGTGGCAGGAGAGATcaaggagcagcagcagctctgGCTGCGGCAGCAGGGGGAACTGGTGAGACTGACCCAGGAGAAACAGGCCCGGAGCGCCGCCCTGCTCACACTGCAGACCCAATTCACCATCCTACAGCAGAGGAAAGTCCGCACCGAGAGTGAGATACAACAGGAGCAACGGGAGCAGGCCGAGCTGGAGAGACACATGAAGGAGCTGATGGCGGACATGTTGAAGCTCAACTCCCTGCTGAGTGAGAACAGGCATCTCCACCAGGCCCTGGAGCAGGGCAACGTTGTCATGGAGACTGACTTCCTGCACAGACTCAAGGAGGCGGAGAGAAACTCCATTGAGACGCAGATGAAGCTAGAGAGGATCCAGGAGGAGAAGGacaggctgttcaacagtctggtggAGTCAGAGCGTCAGATCATGCTGTGGGAGAAGAAGACCCAGCTGGTGAGAGAGACCAGGTCGGCTGTGGACTCTGAGGTGGGCCAGGGAGACATCCGCACCATGAGGGCTGAGATCCACCGGATGGAGGTGCGATACGGTCAGCTGATGAAGCAGCAGGAGCGCCTactgagggagatggagggagtggtGGCTCGCAGGGAGACTATCGTGATGCGCAGTGAGGCCCAGGCACGAACCGACCGCAAGCAGCCCACTCACACCGACTTCCACGGCATCCTGCAGGGCCTGCGTCGGAAGATACTGGACACACAGAAGCAAGCGGAGGAGTGTGACGGGGTCCTCAGGGAGCTGCAGCAGGGCCAGTCCAGTCTGAGCTGCAGTCTGCGGGACAAACAGCTGCAGCTGGGAGAGCTCCACAGTGCCAGAACTGTCCTCACCTCAGACTTCCAATGTCTGCAGGACACCAAGGAGAGGaaccTGGCCCGTCTGGTCTCCCTCCAGGGCCATGCCAAGCAGCTCCAAGCGGTGCGTGAGGGTCGCTACAGCGCCCTGTCCACCAGCGAAGCCTTGGAGCCTGCGTTGCAGAGGCAGGAGGAGCGTCTGCACGCTGTGACCACCATCCTGCACCGTGTCCAGCAGGAGTTCCCCCAGCACCAGGGGGCGCTACGACGCCTCTCCCTAGCCCTGGCCGCGCGCCTGCAGACTCCGATTGGTCAGGAGACCCACTGACTATTACATGACTGAAAACCCCCATCATAGGATTACTCACGGAGTAGATTGGAGATAGAGATCCATCATAGTTGTCGGGTATTACTGCTCTATGGTGTTCCATGTTACTCTGGCTGTTAGGATTAGGGAGCTGGACTTGGGGTGGAAGCTCTCCTCCTGGCCATGTTTGGGCAATTTTGGTTTTCagaatatttcaatttatttttgtttcactTGATAGAATGAAGAGTTgatttaatatacagtatacacgGATATCCTACCAGCGTGTGAAAATAATATTGTCCATGGATAAACTGAAGATACACATAAATAAACAATGAAAGCAA
>XM_036940634.1
GCACTATCCAATGACTAGGCTCTACCCCTTATCCCTTCACGGAAGTTAATCGTTTCCTAGCAACGCCTGGCCGGCTGACAAACAGAGTTCTGAAGAGGTAACTCCTTAACTCAAGAAGCAGGCAACCTTCTTGTAGTGCTGACAGAGTCAACCATCTTGGTTCCCACCGAGTCCAATGGAGGGTGGAGgaagtgagggaggaggagaagaggagaggaggggaacccCGCCACAGGAGGAGGGGAAGTACGTTGAACAGCCAGGTGGTGCTGGCGAGGCAGCAGAGGACTCTGGGGTTACTGTACTACCTGGGCAGGAGGGTGGATCAGCAGAGCAGTCAGACAGGGAGCAGGCCGAGGCGGGTGCTGGTTACCCAGTGTCACAGTCAGGAAACAGTGGTACAGGCGCAGCCTTCAACCCCGCCAGCAACTCAGATAACGGAACGATGCCCTTGCCGCCTCACCCCTCGTTGCACCTCTCAGTCCCCCTCTCCGACAGCGATGCGGACGGGTTACGCAGTGCGGCGGATGAGGGCGATGAGGAAGATGAGCTCATCGTGCTGGACCCTGAACACCCGCTGATGAGAAGGTTCCAGACTGCACTGAGGAACCACCTCCACAAGCAACTGGAGAGACTCAACATGGAGTTGCGCGAGAAGATGGCCATAGAGAGGTCTGAGAGCGACCACCGAGAGGAGCTGGGTGTGGAGCTGTACGGCGTACAGCAGGAGCTGGCCAGACTCCAGGCCTGTCTGGAGGGCCGTCACGAGACCAACGCGCAGGCGGCCGCACAGCGCAGACAGGCCCAGGATCAGCTGGAGGGGGTCCGAAGCCAGTACCGCACCACAGCCATCCAGGCCGGCAAGCAGAGGTCACACGTGTCCCAGCTGCAGAGTGAGGTAGAGAACCTGGCACTGCGTCTGTTCTACATGCAGGAGGTTAACGCCGACCTGCGCTCTGACATCACGGCCATGAAGAACGCCTCGCGCAAGGCCTACTCCGAGAAGACCCAGGCAGAGGAGCAGAAGCACAAACAGgaCTTGTATGTGGAGCGGTTGACCAAACACATGGAGCGGCTGACGGAGCAGATAGCTCTGTATAAAGTACAGACCATCGCCCAGTCTGAGGAGACCCAGGCAGCCAAGGAGGCCCTCTCTGAGGCCCAGATGGAGATGGACTCTTTGGGGATGGAGAGGAAGCAGCTGCTGCAGCAGTGGAACAGCAGCCTGGTGGGCATGAGGAGACGAGACGACGCCTACACCGCCATGCTGGAGGCTCTACGCGCGGCCACCCACCAGGTCCGCTCTCTAGACACCGAGATCGAGGGCTTCAAGAAGTCCATCACGCAGGAGGGGGAGCGCAATGAGCTGCTGACAGTACTACTGAACCGGACCCAGCTGGACAGCGCCACCTCCAGGAAGCTGATCTCCCACAGCCACAGCCAGCAGGAGGCGCTGCAGGTCCAGTACAGCATCTACATGAGGACGCTGCAGGAGACCGAGCAGACGCTGCAACGCGTTAACACGgaGTGTGGGGTGCGCCAGGTGGAGGTGTCCTCCCTGAGGAAGCAGACGGAGAAGGAGTGGGTGCGGCGCATCGAGCTGGAGGACCGCATCATGTCCAAGATGCAGGAGCATCTCACCCACGACAAGGCCACCAAGTACTCCCGACGCCTCACCGACAAGATGGCCGCCCACAAGAGGGAGAAGGAGACCCAGCTGTCCCGGCTGGAGAACGAAATGGCGGCGGTGACGCTGGAGAGCAGTGACCTCACCCTGCGCCTGGAGGGTCTGGCCCGCACCCTCGCCTCGCTGGAGACGGAGATGAGCCGCCGCAACGAACTGCTCGGCGCCAGCGAGGCCAGGATCACCAAGCGCGTCACCGTCATCGAGCGCAAGCAGGCCACCATCAACGTTTACAACAAGAAGATTGAGCAGCTCGTCGCCAGCACTGGGCACGAGGACCTGGGCCCGTTGGAGATCCAGGCCAGTACTCTGACCAAGCAGCTGGAGGGGGTGGCAGGAGAGATcaaggagcagcagcagctctgGCTGCGGCAGCAGGGGGAACTGGTGAGACTGACCCAGGAGAAACAGGCCCGGAGCGCCGCCCTGCTCACACTGCAGACCCAATTCACCATCCTACAGCAGAGGAAAGTCCGCACCGAGAGTGAGATACAACAGGAGCAACGGGAGCAGGCCGAGCTGGAGAGACACATGAAGGAGCTGATGGCGGACATGTTGAAGCTCAACTCCCTGCTGAGTGAGAACAGGCATCTCCACCAGGCCCTGGAGCAGGGCAACGTTGTCATGGAGACTGACTTCCTGCACAGACTCAAGGAGGCGGAGAGAAACTCCATTGAGACGCAGATGAAGCTAGAGAGGATCCAGGAGGAGAAGGacaggctgttcaacagtctggtggAGTCAGAGCGTCAGATCATGCTGTGGGAGAAGAAGACCCAGCTGGTGAGAGAGACCAGGTCGGCTGTGGACTCTGAGGTGGGCCAGGGAGACATCCGCACCATGAGGGCTGAGATCCACCGGATGGAGGTGCGATACGGTCAGCTGATGAAGCAGCAGGAGCGCCTactgagggagatggagggagtggtGGCTCGCAGGGAGACTATCGTGATGCGCAGTGAGGCCCAGGCACGAACCGACCGCAAGCAGCCCACTCACACCGACTTCCACGGCATCCTGCAGGGCCTGCGTCGGAAGATACTGGACACACAGAAGCAAGCGGAGGAGTGTGACGGGGTCCTCAGGGAGCTGCAGCAGGGCCAGTCCAGTCTGAGCTGCAGTCTGCGGGACAAACAGCTGCAGCTGGGAGAGCTCCACAGTGCCAGAACTGTCCTCACCTCAGACTTCCAATGTCTGCAGGACACCAAGGAGAGGaaccTGGCCCGTCTGGTCTCCCTCCAGGGCCATGCCAAGCAGCTCCAAGCGGTGCGTGAGGGTCGCTACAGCGCCCTGTCCACCAGCGAAGCCTTGGAGCCTGCGTTGCAGAGGCAGGAGGAGCGTCTGCACGCTGTGACCACCATCCTGCACCGTGTCCAGCAGGAGTTCCCCCAGCACCAGGGGGCGCTACGACGCCTCTCCCTAGCCCTGGCCGCGCGCCTGCAGACTCCGATTGGTCAGGAGACCCACTGACTATTACATGACTGAAAACCCCCATCATAGGATTACTCACGGAGTAGATTGGAGATAGAGATCCATCATAGTTGTCGGGTATTACTGCTCTATGGTGTTCCATGTTACTCTGGCTGTTAGGATTAGGGAGCTGGACTTGGGGTGGAAGCTCTCCTCCTGGCCATGTTTGGGCAATTTTGGTTTTCagaatatttcaatttatttttgtttcactTGATAGAATGAAGAGTTgatttaatatacagtatacacgGATATCCTACCAGCGTGTGAAAATAATATTGTCCATGGATAAACTGAAGATACACATAAATAAACAATGAAAGCAA

Function

symbol description
ccdc40 Involved in epithelial cilium movement involved in determination of left/right asymmetry. Acts upstream of or within several processes, including axoneme assembly; embryonic heart tube morphogenesis; and epithelial cilium movement involved in extracellular fluid movement. Predicted to be located in cell projection. Predicted to be active in cilium and cytoplasm. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and pronephric mesoderm. Used to study primary ciliary dyskinesia. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 15. Orthologous to human CCDC40 (coiled-coil domain containing 40).

NR:

description
coiled-coil domain-containing protein 40

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0003146 heart jogging biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0035082 axoneme assembly biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0001947 heart looping biological_process
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23730 CCDC40; coiled-coil domain-containing protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940632.1 False 3887 mRNA 0.57 19 22754475 22766062
XM_036940633.1 False 3666 mRNA 0.58 20 22754475 22766062
XM_036940635.1 False 3651 mRNA 0.58 20 22754475 22766062
XM_036940636.1 False 3430 mRNA 0.59 20 22754475 22766117
XM_036940634.1 True 3483 mRNA 0.59 20 22754475 22766155

Neighbor

gene id symbol gene type direction distance location
LOC110485971 LOC106588435 coding downstream 9176 22728553 ~ 22745299 (-)
LOC110485970 LOC106588430 coding downstream 122111 22627746 ~ 22632364 (-)
LOC110485969 cbx8 coding downstream 138396 22612185 ~ 22623151 (-)
LOC110485966 LOC106588413 coding downstream 149502 22597440 ~ 22604973 (-)
trappc5 LOC106588386 coding downstream 221490 22530805 ~ 22532985 (-)
LOC110485973 LOC106588447 coding upstream 146 22766301 ~ 22834643 (-)
LOC110485111 LOC106588440 coding upstream 71830 22837985 ~ 22838908 (-)
LOC110485974 LOC106585623 coding upstream 149459 22915614 ~ 22993515 (-)
LOC110485975 apoh coding upstream 299267 23065422 ~ 23070647 (-)
LOC110485976 LOC106585643 coding upstream 304851 23071006 ~ 23077109 (-)
G1155390 NA non-coding downstream 960 22752953 ~ 22753515 (-)
G1155386 NA non-coding downstream 5247 22749021 ~ 22749228 (-)
G1155370 NA non-coding downstream 45966 22708184 ~ 22708509 (-)
G1155365 NA non-coding downstream 56040 22698230 ~ 22698435 (-)
G1155415 NA non-coding upstream 68515 22834670 ~ 22835029 (-)
G1155416 NA non-coding upstream 70073 22836228 ~ 22837546 (-)
G1155423 NA non-coding upstream 85705 22851860 ~ 22852155 (-)
G1155426 NA non-coding upstream 88414 22854569 ~ 22854898 (-)
G1155427 NA non-coding upstream 89036 22855191 ~ 22855495 (-)
si:ch211-214c7.4 LOC106588372 other downstream 290800 22462260 ~ 22502075 (-)
LOC110485947 LOC106588570 other downstream 681050 22069722 ~ 22073496 (-)
LOC110485936 LOC106588110 other downstream 1289209 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 1493832 21247188 ~ 21260739 (-)
G1153336 NA other downstream 1766702 20984731 ~ 20987773 (-)
LOC110485982 LOC106567469 other upstream 450028 23216183 ~ 23220256 (-)
G1155674 NA other upstream 460059 23226214 ~ 23250232 (-)
G1155782 LOC106585672 other upstream 636224 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 833352 23599507 ~ 23601690 (-)
LOC110485996 LOC106586353 other upstream 940602 23699036 ~ 23707634 (-)

Expression


Co-expression Network