LOC110485978 (LOC106564882)


Basic Information

Item Value
gene id LOC110485978
gene name LOC106564882
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23080663 ~ 23325301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940643.1
TTTGTTGGGCAGTATTGTTATTTGTGATCGTAAACATTAGGGAagggtcatgtgaaaatatgATCCTCCCCCCCACAGTAAATGTTGAACCGTCCCTAAAGACTTCAGAACAAATGAATAAGCCACACATAACAAACACATTGataatggattaaaaaaaatgcGATGACTATGATCCGTGCTTTGAATTAGGCGAAATAgctactcattttgggtgccggcTCTGTTTTCATTTAGGTGCAGGAACTCCATAAGAAACACATTTGAGCCAAGTCAAGCACTGACTACGATATGACTGAGATGTCGTTTCTCTTCAAATAACTAGGTTGAACCCAAACATGTGCCAGTATCTTTTACGCCACTGGATGACGCTCCAATCTTCCAAATTCCAACAGCCCTCCCTCCAGGCGATTCAGTGTGGTGACGTCAGCTCGAGTGAAAGACGGAAGCAAAGCGCTCATTGTGGAGCCGTCAGTAAAAGTAGTTGTAGCGACAGCTTGGGAAAGCTCATAGATAGTACAGTGTGGTCGCCTCTCCTGCTCAGTGGCAACATTTGATTGAATAGGTATATATACACATTAGATAGAGAGGAATAACGTTGCTCTTTTTTTTCTGTGTGTGACTATGGCTGATGTTACGCAATTCAACGAGGGGACCGGGGACATCGCGAAAGGGTTTGCTCGTAAAGGAGCGTTGAGGCAGAAGAACGTCCATGAAGTGAAGGACCACAAATTCACTGCGAGGTTCTTCAAGCAGCCGACTTTTTGTAGTCACTGCACCGACTTTATTTGGGGATTTGGAAAGCAAGGATTCCAGTGCCAAGtttgCTGTTTCGTGGTCCATAAGAGGTGCCATGAGTTTGTCACGTTCTGCTGCCCCGGGGCGGATAAGGGTCCCGACACAGACGACCCCAGAACCAAGCACAAGTTCAAGATCCACACCTACGGCAGCCCCACCTTCTGCGACCACTGTGGCTCTCTCCTGTACGGTCTCATCCACCAGGGGATGAAGTGTGACACCTGCGACATGAACGTGCACAATCAGTGTGTGATGAACGTGCCCAGCATGTGTGGGACGGACCACACCGAGAGGAGGGGACGCCTCTACCTGAAGTGTGAGGTCACAGAGGACAAGCTGCAGGTCACAGTGGGCGAAGGTCGAAATCTGATCCCCATGGACCCAAACGGCTCGTCTGATCCTTACGTCAAGCTCAAGCTCATCCCAGATCCCAAGAATGAGACCAAGAAGAAGACCAAGACCATCCTCGCCAACCTCAATCCCACCTGGAATGAGTCTTTTACATTCAAGCTGAAGGCTACAGATAAGGACCGCAGGCTGTCTGTGGAGGTGTGGGACTGGGACCGGACTACCAGGAACGACTTCATGGGCTCCCTGTCCTTCGGCGTGTCAGAGCTGATCAAATCTCCTGTGTGTGGTTGgtacaAGATGTTGAACCAAGAGGAGGGCGAGTTCTACAACGTGCCCATCTCAGAGGAGGATGACGGGAACGAGGAGCTCCGACAGAAGTTTGAGAAAGCCAAGCTGGGCCCTGGTACCAAGAAGGTGATCTCTCCATCAGATGACAGCCCATCTAGTCTGCCCTCTAACAACCTGGACTCGGTCAAACTCAGCGACTTCAACTTCCTGGCCGTGCTGGGGAAAGGCAGCTTCGGCAAGGTGATCCTGGCAGAGATGAAGCCCACGGAGGAGCTGTACGCCGTCAAGATCCTGAAGAAGGACGTGGTGATTCAGGACGATGATGTGGAGTGTACCATGATCGAGAAGAGAGTCCTGGCCCAGCAGGACAAACCACCCTTCCTCACTTCACTCCACTCCTGTTTCCAGACTGTGGACCGGCTGTACTTTGTCATGGAGTACGTGACTGGAGGAGACCTCATGTACCACATCCAACAAGTGGGCAAGTTCAAAGAGCCGCAGGCGGTTTTCTACGCAGCAGAGATCTCTGTCGGCCTGTCCTTCCTGCACACGAAAGGAGTCATTTACAGGGATCTGAAGCTGGACAACGTGATGCTGGACTCGGAGGGCCACATTAAGATCGCTGACTTTGGCATGTGCAAAGAGAACATACACGAGGGTGTGACCACTCGCACCTTCTGTGGGACGCCCGACTACATTGCCCCAGAGattATTGCATATCAGCCATATGGGTTATCAGTGGATTGGTGGGCATACGGAGTGCTGCTCTACGAAATGTTGGCAGGACAGCCCCCGTTTGATGGTGAGGACGAGGACGAGCTCTTCCAGTCCATCATGGAGCACAACGTGTCGTACCCCAAGCAAATGTCCAAAGAGGCCGTGTCCATCTGCAAAGGGCTGATGACCAAACACCCGTCGAAGCGTCTGGGCTGCGGCtccgagggagagagggacatccAGGAGCACGCCTTCTTCAGACGCATCGACTGGGAACGCCTCCAGAACCGCGAGATCCAGCCCCCCTTCAAGCCCAAAgggTGCGGCAAAGGGGCGGAGAACTTCGACAAGTTCTTCACGCGCACCCAGCCCCAGCTCACGCCCCCCGACCAGCTGGTCATCGCCAACATCGACCAAGCCGACTTCTCAGGCTTCTCCTTCATCAACCCCCAGTTCGTGCACCCCTCCCTGGTCTCCCTGCACACCGTATGAGGGGGAGGGGGCCACGGACGTCCCTTCCTACCTCTGCTCCCTACCTAGCACTAACCCTCCAACTGCAGCCTCTTCAAGCCAAACTCCCAATCACCAAAACTGGTCCAACtctacaacaacaacacagacccTGATATCAACCGCCATTTTGAGTTCCTCTATCAATGTATTAATGATGTGTCCTCTAGGAATGGGACTTGGGGCTCTGAGGGAGAGGAGTTGGTGAGTGGAAGTGCTGTGTGTTAATGGTGATGGGGAGGATGAAGGTTTGAGGAAGGAGATGTATGTAGGGTTGATATACTTTCCCACCCACCTGTTGTGTTTGTTTTCGGACGGGCAATTGTTTGAAATGAATCATGATAGATGTTGAAATGAATCATGACAGATATTGAGATGAATCATGACAGATATTGAAATGAATCATGACAGATATTGAAATGAATCATGACAGATATTGAAATGAATCATGATAGATATTGAAATGAATCATGACAGATATTGAAATGAATCATGATAGATATTGAAATGAATCATGACAGATATTGAAATGAATCATGACAGATATTGAGATGACTGTCCTGTTGTTTTGAATGTGTGGGGACAAAACCCATGAAACTATGCCAGTTTTTTTTTCTGATTCTAGAGCGAAGggttaacttcttgttaaaccctGTACTGGCTATACTAGTCTCCATTGAAACCCAAGGCCACTACAAACATAATATCTTGTTTTGAGCTATTGGGTCAGAGCCAAATATGAGGTCAGTACAGGGAGACTATGTTTACAGTTTTACCTTGTGTTGGTGAGATTTTATTTCAATATGTGTCATTACAGGTGCCCCTATGTTTCAATATACATCAAATAATACACACCCAGTACGAATATCATGACACACTAACAATAACAcgcacatacagatgtaggatcttaatttgatcaccccaTTGCAGGAAAACTTTCCTGCATTGCAAACTAAAATGTGTAATgtgtttgaggtttaaaaaggcttctgaagtttgtaatttccacttagacATTTCAGACTTGGTttttttcccttacgaaaaatgtatcaacccctaaaaaaaaaaaggctattaattataatccacataataactcACATTTCCTGTAGCCGCacagattattttcctgctgtagcaaactggctcaaattaagaccaTACATCTGTACACACGTGTTACATTAACACAGGGATATCTTGAACCTTGAACTCCAGGTTGTATGGTTATCTTGTCATTAGGTTTACAACTGTGAGTGGACATTGAGACAGAACGCAGTAGAAGTTGTGGTCAGATGAAGTAGGCAGTGCAACAGTCCCATCTTCTTTCAACACCTACACGAGAATCACAGGTTAACAGAGGTATAAAGGTGGTCGTTCCAAAAGCAAATGGTGATCAGGTAGCACTACTTTGTGACAGCCTTTTTACTATCCTCCTGTCCCAGCTTTGTTGTCACTCTGCCCACTTATCAAAAAGGCCCTCAATGGCCATGATTCTCTTTAACCTGAAGAAGTCCTTCAATGTTAAGTTCCCGAGGGAAATTTATTGAGGATTTAGGAAGTAAATTACCTAAaactcttctttttttttgttgagagGTAGCAACTAAATTTAAATTGATGTTGAGTTATTGTTTGCTTACTCAATGAACCGTGCAATATTATATTGCATGCTTATACCCTTCTACATGGCTATAACGCCATTCTAACCATGTTGACTAGAGTATCACGTTATTAAAACGTTTAGTTCCCTTTTCTGCTTTTATGTGATgtcatgcacccccccccccccgcccccccccccccccccaattagtTCTAATTAATATTTTAGTGTAACACATACCAGTGTATTAACTCTTTTGTAAATATTAAtgagctatttaaaaaaaaaaaaaagtatagtaTCTCGCAGATTTTATACCTACAACTGAATGTGATTTTATTATGTTAGATAGGTTAACATATttctatgtaaaaaataaagtacCCCAAAATATCAACTTTGTAACAATTAGGTGATAAAGTATTTTAATCGAGTCGGTCGGGATTAGCAAACCGAGAGAAACATCTGGACGACTTTTTGCCGATATTATCAAACATTTTCCGTTTGCTCTCGTCTCCGTCGCACATATCCGATGTCCTTGAATGCGATCGCTGAGTGAGTTGACTGAATGTGTGCCTGGCTCTTGTATCTGCATGTTGTTGGCGAGGATTTAAAAATAAGTTTAACAAAATGATATAAATGCTGCATGATACTCAGTACCAGTAACCAGGCCCCTGGTTGGATAGCAAAGGAGTCTCCGCCCAAACACCAGATCCAAGATCAGCTGAACCTACCCTAATCCTAGCCATTCACAATTAGGAGGCTATGGTCAAATCTGACTACAGATATGCGGTTAGGGGAACTCCTAAGCACATCTCTGTACTAGACCAGATGGGACAACTTGCTCTCTAGTGTCTCAATGAAGGGGTTTTGTTTCTTCTTATCGTTAGTATTGTTTGTtcgtataaaaaaaaaaaaaaaatttacatTATTTGTATTGTCGTCGTTTTTTTGTTTGGTTATAGATTCTGCTCAAGTAATACAGGAATATTTTGCGGAATTATCATCATAGCAATTCATATCTTAACATCTAACTGTTGCTAGATTTATACAATTCCCTCGACTTTTGCTCCTATAAACCTTTTCCTAACCTCGTAACTGTGCCAAACCTGAAACAGCCAGAACCCGACAATAGCAGCGTTGCACTAGCTGTAGTCATACCAATGACCCGTCAATACCGAAATCTTATCAATACCGATGTGTTGTCAATACACATGTTTTTTTCAATGCCGATGACTCGTCAATACAGATGTCTCTCCCTGGTAGACTCTTGGTGGTTAGTCCAAGAGAGCGTGCCAACACCACATTTCACAACGTATTTCCGACCCATGTGCTTCTCGCTAAAAATATGTAGCTAAGGGATTGCTAATTCAAATAATGTCGACGTGGTTCTGATGCCAGACAATCCGGCAGTCGTTTcttgtagtttatttttatttttatgtcacGTTAGCAGCCTACACCTCTGTGGGAGTTTACCTTTATGCTCTATAGCCGGACAGCAGTATGACCCTTCTGCGATACCATGCCTGCTTACCCCTTACCTTAACTCCCTGTGCctatcagtcagtgtgtgtgtttacatgtgcgtgtgagagagggaaggaaggaaaccATAAATGAGTGGTTGTTGAGTGAATaaatgagtgagtgtgtggatgAGTGAATAATTGATCGGTGAACAACCCCGTTCCTCATCCTATTGGCCTGTTAAACCCCCCGTCTGGGTAGCTCATCTCCTCTGTCCATCCTTccattcctcccctcttcctcagtGCCTGGGCAATCGATCCATTCCCTTACTGACAAagccctcatcccttctccttcaaGATCCAATCAGTTCATGAAAGCAGTTTCGTCCGAGAAACTCGCCTCTACAGGCTGACACCTACCTGCCCTTCTTGCCCCTTCCAACCCTCCCAAAACGTACTGGGGAAAGAATTGGCCAAATGTGTTCTTTTTCACCTTCGTTTACATCCTGCTTTATATTTTCCTTTGCCTTAGCTCCTACgtggtgtgtcccaaatggcaccctattccctaaatattgcactacttttgtccataagccctggtcaaaagtagtgcactatatagggaatgggatgCCATCTGAGAAACAGCCAGCCTCTTCCCCCATTCTCTGTTGATTCATGTCCAAACCAAGCGCTTCTTCTGTCCCTGTACATAATGATTTAGATATCTACATAGACTTGTAAAAGAAAGAATATATTGTATTTTGCAAATGGTTTATGTTCATTCTCCCCAAAAACCCTTTGAAAGCGAGTCTGAGCTACTTACCTTGTAATCAATAGTGTAATTTGTACCTACTGTATGATAatgcaaataaaaaataaaaaatggc

Function

NR:

description
protein kinase C alpha type-like isoform X2

GO: NA

KEGG:

id description
K02677 PRKCA; classical protein kinase C alpha type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940643.1 True 6644 mRNA 0.45 17 23080663 23325301

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 470292 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 484390 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 511855 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 538417 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 623659 22453773 ~ 22457004 (+)
LOC110485983 LOC106585659 coding downstream 4933 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 41904 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 77095 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 186405 23511706 ~ 23591433 (+)
LOC110485992 LOC106585723 coding downstream 270575 23595876 ~ 23608606 (+)
G1155020 NA non-coding upstream 5979 23070909 ~ 23074684 (+)
G1155021 apoh non-coding upstream 10041 22984685 ~ 23070622 (+)
G1155018 NA non-coding upstream 97763 22982592 ~ 22982900 (+)
G1155017 NA non-coding upstream 98233 22982230 ~ 22982430 (+)
G1155012 NA non-coding upstream 114596 22965864 ~ 22966067 (+)
G1155186 NA non-coding downstream 1119 23326420 ~ 23326628 (+)
G1155022 NA non-coding downstream 29028 23354329 ~ 23356866 (+)
G1155225 NA non-coding downstream 58505 23383806 ~ 23384038 (+)
G1155227 NA non-coding downstream 59790 23385091 ~ 23385435 (+)
G1155212 NA non-coding downstream 67809 23393110 ~ 23395421 (+)
G1155006 LOC100136012 other upstream 121312 22958932 ~ 22959351 (+)
G1154412 mcoln1 other upstream 568923 22511379 ~ 22511740 (+)
G1154335 NA other upstream 624314 22439636 ~ 22456349 (+)
G1154234 NA other upstream 921234 22158571 ~ 22159429 (+)
G1156089 NA other downstream 673345 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1001482 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1438801 24764102 ~ 24764346 (+)

Expression


Co-expression Network