LOC110485982 (LOC106567469)


Basic Information

Item Value
gene id LOC110485982
gene name LOC106567469
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23216183 ~ 23220256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035503.1
ACATGTCCATGATAGCTATCTAATAACTATAGTTATGCTTGGTAATGGTTTGGCTTATCATGTTCATGTCTATGCAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGACAGGtaccagggagagagaagggcagagaaagagaagaagaggtctGGGTCAGCAGCTTCAGGCCAACAGCCTTGGTGCTTCTGCCACATCCTTTTCTGGATCCATTTATTGTGCCTAGGGCAACGAGTGGCAATATTACAGCCAGACTCTCTACGACCTCATCCATTGTGTTGTCGCCACCGGTGCATCAAGACCCTCTACGTCATTTAcaagtgagaccaccacctccaccagtacagcgagaccctctacaacatctacatcatccacaagtatgaccaccggTGCAGCCATGGAAGATGATGAAATGGAGGAAGCACCTCTGGATCTAGGACCACCTGAGATTATTATGTACCTCACAGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGCAGTGGAGACAAACGAAGAGGAACAACGTCACACCAGGCGTCGGAGGATGCTCTCCTCCAAGCCGTCGAGAGGGATGCAGCACAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTTACCATGAGCCTGGTGCCAACACTGAAGAGGCTGCCTCAGCGAACAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGGTACAATTGTTTTGTTTGTTACATCACAGGTAGTGTCATAAGTGTGCGACAGTGAAGTAAAGTAGGTCATTTTTACAGTATACTCATGTTGGCTAATTGGTATTTCAGATCAAAGTATTAATATGAGGCAAATGTATAGCTGTTGTTTCTGGGTTAGAAAATATCCTAAAACAACAGTTTGCTGTCTAAATATTTGCCTGTCACATTCATCTTTTGATCTGAAATACAAATTCCATGAGTAAACAGCACGTATTACCAACTTTACCACACTGTTCCAATTTATGCCTCTAACAACCATATACTGCTTGTATAGTGTAAACATAAATCTCACCTTTTATGGTGTTCTATTATGTTAAGCGTGTATGTGTTGTTTTTCTCTTCCCTTCCATTTAGCCGACCAGCTCACAGGAAGgtcaggaagaggagaggagttgtcTGGTTGTTGTCTTTCCTCTTCCCTTCCATTTAGCCGACCAGCTCacaggaaggacaggaagaggagaggagttgtcTGGTTGTTGTTTTGACCTCCCTCAGTGTACCTTTCTTTTCACACATGTCAGTTCCGtttaaattcagtcaattcaTAAAGTCGTTTGTTTCTAAAGTCTTAGGATAGCATTCATTATTAGTGTTACGTACATTTCTGAATTGACAGAATTGAAACTTATATACCGGAGAATTCACAGATGCTCTTGTTGGTCTCTTACGAGACTAAaggtgaatatatttatttcatttaaaaccACTTCAAACCAGGGTGTTGAAACTTTTTGTGAAGTTAAGTTCCATCGACTGGTCCATGGGCCATTTGTTTGTTTAGCTGTGTTATGGctacatattatttatattttttcagaaacagacacacatacctctcctccactcctctctggtACCTCAGATCTCCAGTGCCCTGTCCTCTCGCTCTTTATGGCCATGCCTGAAGTTCCCTTACTATGTCTAGGCTTTATGAGTAGTGCCTGTATCTGTCTGCAGGTGTGCCAAAGATACATGCTCTTGTTGTTCTCTTACAGATTACAGGCTACACATTAactttttacatttatttgtcgcgcatgcacacacacacacacacacacacacaccatgttctTTCCTGTACTTGAATACTTATTAAAATATGTTTTCATAGTCATTTTCATTTTCCCACCTGTATTTTGTCAGGCCAGTGAACATGGTGGTAAACTGTACTATTTGTATGGACCCTGGGTTACCTAGGTTACCCTTTCCCTTTGTTATCATACTAACTGTATGTCGTATAACCTTAATTAGTGCTCCCGCTCACCTGATGTACCATGCCAGGTGTGTATAATAGGGGTTAAGGTGTGGTCTTCACTCCCAAAGTTCACTTAAATATAGCTTCCAAATGAAGAGAGACAATGATATATAAAGTCAtctgggggaaaaaactattttatGGACAACGGTGGATGGTTCTTAAAATAACCTTTGTGTTATGGGGCTCTTAAGAAAGCTGTTTCACTCCACGGCATACTGCCATGGGACTTCACCTGCTGGTGATGAGAAGTAGGTGGTCACCTGGAGTGCCTGTCTGGGGGCGTGGTTGGCACCTGCCCTGGTGACATCAGGTAGGTGAACATTTGGCGTGCCCATCTCCATCCGGAGCGGCTCCTGGAATGACCTCCGCAGGTAGTTGTGGAGAACACATGTGGCCTTCACCCAGGCATCGACATTTGAGGGGCTGAGACCAAGCACTCTCTGATACATTCTCCATCGGGCTGCCAGAATCCCAAAGGCGCATTCAACAACTAACCTTGCCCCGAACAGTAATTTGTTAAAGATCCTTACAGGCTTTGGCAATGGCAGCTGGCGTCCAGCGTAGGGCCTCATGAGGTTGGATCTTAAAGGGAAGGCCTCATCGCCGACGAAGACGTGGGGAACAGTGATGCAGGTGGTGGAATATCCAGGGTGCCATCCTGAAGTGCCTGGCCACAGGCAGAGTCCCGGAGGGTCCCGCAGTCACTTCCCTCGCCATTAGCACAAACATCGACAACACGGAAACAGTAGATTGCGTCTACTACAGCCAAGAGTACAATTGAATATGTACCCTTGTCGTTGTAGAATTGCAAATCGCCAACTGGGCTGATGGACTCACGGTAGTTGGTATCCATCTGGGCGATCCTGGCTCCAACCAGGTGATCGAACTGGCTTCGGTCCAGACAAAAGTAACTTCGGAGTTCCTCTCCAAACAGCCGAAGCTCTTGAATGAGGAGGTGGAACTCCCCTGCCTGCTTTCGGGACTTTAACCATCTCTGGACAAACACGGACCTGCGCTTTCGGCGGGGCTGGTCCCGGCCCAACAGCGCGATAAAGACCGCCTTCCTCAACGCTGGTctcacactatatagggaacatggtgcTATTTGGAAAG
>TU1317952
GACCACCTGAGATTATTATGTACCTCACAGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGCAGTGGAGACAAACGAAGAGGAACAACGTCACACCAGGCGTCGGAGGATGCTCTCCTCCAAGCCGTCGAGAGGGATGCAGCACAACCTGATGCTCACAGGAAGGAGGATGAAGAGACCCTCTTTTACCATGAGCCTGGTGCCAACACTGAAGAGGCTGCCTCAGCGAACAAAAGCAGCAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGGTACAATTGTTTTGTTTGTTACATCACAGGTAGTGTCATAAGTGTGCGACAGTGAAGTAAAGTAGGTCATTTTTACAGTATACTCATGTTGGCTAATTGGTATTTCAGATCAAAGTATTAATATGAGGCAAATGTATAGCTGTTGTTTCTGGGTTAGAAAATATCCTAAAACAACAGTTTGCTGTCTAAATATTTGCCTGTCACATTCATCTTTTGATCTGAAATACAAATTCCATGAGTAAACAGCACGTATTACCAACTTTACCACACTGTTCCAATTTATGCCTCTAACAACCATATACTGCTTGTATAGTGTAAACATAAATCTCACCTTTTATGGTGTTCTATTATGTTAAGCGTGTATGTGTTGTTTTTCTCTTCCCTTCCATTTAGCCGACCAGCTCACAGGAAGgtcaggaagaggagaggagttgtcTGGTTGTTGTCTTTCCTCTTCCCTTCCATTTAGCCTACCTGTGACCTGCAGCTTGTCCTCTGTGACCTCACACTTCAGGTAGAGGCGTCCCCTCCTCTCGGTGTGGTCCGTCCCACACATGCTGGGCACGTTCATCACACACTGATTGTGCACGTTCATGTCGCAGGCTGAAGGGATgcagacacacagaaagacag

Function

NR:

description
cell wall integrity and stress response component 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035503.1 False 3154 mRNA 0.46 2 23217064 23220256
TU1317952 True 924 TUCP 0.45 3 23216183 23219809

Neighbor

gene id symbol gene type direction distance location
LOC110485976 LOC106585643 coding downstream 139955 23071006 ~ 23077109 (-)
LOC110485975 apoh coding downstream 146417 23065422 ~ 23070647 (-)
LOC110485974 LOC106585623 coding downstream 223549 22915614 ~ 22993515 (-)
LOC110485111 LOC106588440 coding downstream 378156 22837985 ~ 22838908 (-)
LOC110485973 LOC106588447 coding downstream 382421 22766301 ~ 22834643 (-)
LOC118938242 NA coding upstream 7787 23228043 ~ 23233566 (-)
LOC110485981 NA coding upstream 18388 23238644 ~ 23250237 (-)
LOC110485986 LOC106585679 coding upstream 222231 23442487 ~ 23499325 (-)
LOC110485989 LOC106585705 coding upstream 279746 23500002 ~ 23506509 (-)
trnas-aga-59 NA coding upstream 390456 23610712 ~ 23610793 (-)
G1155571 NA non-coding downstream 108994 23105008 ~ 23108070 (-)
G1155513 NA non-coding downstream 205562 23011185 ~ 23011502 (-)
G1155491 NA non-coding downstream 235019 22981835 ~ 22982045 (-)
G1155490 NA non-coding downstream 235294 22981539 ~ 22981770 (-)
G1155489 NA non-coding downstream 235887 22980968 ~ 22981177 (-)
G1155704 NA non-coding upstream 100890 23321146 ~ 23325274 (-)
G1155773 NA non-coding upstream 164840 23385096 ~ 23385296 (-)
G1155774 NA non-coding upstream 167873 23388129 ~ 23388341 (-)
G1155776 NA non-coding upstream 168967 23389223 ~ 23389559 (-)
G1155777 NA non-coding upstream 170278 23390534 ~ 23392324 (-)
si:ch211-214c7.4 LOC106588372 other downstream 753389 22462260 ~ 22502075 (-)
LOC110485947 LOC106588570 other downstream 1143639 22069722 ~ 22073496 (-)
LOC110485936 LOC106588110 other downstream 1751798 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 1956421 21247188 ~ 21260739 (-)
G1153336 NA other downstream 2229291 20984731 ~ 20987773 (-)
G1155674 NA other upstream 5958 23226214 ~ 23250232 (-)
G1155782 LOC106585672 other upstream 182123 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 379251 23599507 ~ 23601690 (-)
LOC110485996 LOC106586353 other upstream 486501 23699036 ~ 23707634 (-)
LOC110486013 LOC106585880 other upstream 866448 24086694 ~ 24134220 (-)

Expression


Co-expression Network