LOC118938242


Basic Information

Item Value
gene id LOC118938242
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23228043 ~ 23233566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035502.1
cctgtcaggtagatggaatatcttggcaaatgagaaatgctcactaacagtgatgtaaacaaatttgtgcacagaatttgatcGAAAGAAAATTTTTGTgcgtgtggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgttgagtttatatatattttttaagtatatGCTTGCATTACTTTGACATCCCATCAGCAGTAAGtatttaatatattattataataattattattataaagtTGTGTGGCGATTGGCAATGACAGAACTGATGTGTAAGACAAGGGCCCTGTGTCTGACTGACAGGCTCATTTAGAAAAGGTGAAGCAACAATAGAGCTGTGGTGTAATGTGATGGACATCATGCTAACCCAGGGAATGCTAAGGGAATCCAGGTCGTATGTTAGGCGTTGTGCTGACAAACAGCCAAGCCGGTGCTTTACAGGGAACCAATAAGCAGGGCAATTCAAACACGCTGGCGAAGCTGTCTTTGTCTGCCTGGGAAAATGCATTACATTCCTATCATAGGAATGAGGCAGGTAACTTTTAGACCAGATAGCTGCATTATGTACCTCATAATAATTTACATGAGTTATGTAAGTAAATGTGTGATAGAAATGTCATCATTTTTCTAACATTAAAAGGTTTGTTTTGGAGCATTTTTGCATAATGACATAATCATAACACTGCCAAAGAATGATAACATTAGCTGTTATGAAATGACTCCCCGGGTGTTACTAACACCTAGCCAACATAAACCTCTTCAAATCAAGAAACCACTTTCACCAGCGAGGTCCAGCTTCATCACAGCATTCCTGGCTCCATCATAGCCTACTAGAACACATTTCAGTATAAGGAGAGAGCTCCATATCCTCTTTGGCTTGCTAGTGCATTTAGCATTCTGTCCACTTTAGACGGGCCCCAATCGGCAgtcccatctgtctgtctgttaatggGAAGAGCAGTTAGTGATTTAGCTACGggaatatttgtgtgtgtgcttgtgtttgtttgagtgtgtgttcGCCTCACAGCCACAGCACAGCCGAGCCCAGTGGAAGGGGGAATGTCTACCAGTAGGCATATAAGCAGGCCGCTGCTCTGTCCTGAAGCTAAATAGAGTTAAACATAAGCAGAATGTTCCAAGGAGAAGCCAGCCAAAAGCCCCTTTGAAGCAGAATGGACTGAAAGTGACACTTAAATTAAGGAAGTGACTCTTAGTTGAAGGCTGCTTGGGAAGGCTACTGCCAGCCAAGGGATAGGGGATACATTGAGACCACAAGTAGTCATTTGAAATAGACGTGGGTCTGTATTTGTTAGCAACATGGCTTGGCCCTCTTTGCTCTCTTCTTCTTCCGACAGTGTCATATGATGGGTGGCCCACACAGAGTACTAGATGTTCCAGGGCTGCACTGCCCAGTGGTGTCTCCTGAACGTTTTGTAGGCCCGGCGCCAATACTTTGGGAAACGCATCCTTCCTCCATTGGTCCCTTTGCCATCACTGATTTGACTGTGTTGGCGTTATGCTCTACAGTGGGAACCCTTACTCTCACCTATCCAAAATAGGTTAGGTTCATGATTGCatgaaggggtggaggaggaaAGAACAATGCATTTGAACATTGGAACAGGgctttacagtacagtacatgggtCCTCCTATCTCCACTTCCTAgtgctgttctctctctgtaactgTATTGGATTATGACAGTTAGGTCGACTTCCCTTCCTTTTCCCgattccttcctcctcccctacATTTGAGTCACACTTAATTTCACACTAGCAATTACGCCGATGGAGGGAAGCCACAATcgaattatacacacacacacacgtctggtcTGAGCGCTTGGCAGCCAGCCGGGCGTGTGATTGGGCCATGAAAAGTGACCTCACATATCGGAGGGAAACGAGTTGATCTGCACTAAGCTGAACGGCAATTTTCATATGTAACAAAACATTTGGGGAAACAAAATAGGGTTAATATGGTTCTAGAGTGAACTCTCAATAATGGAAAAGTGCTATATGACAAGTACATGACTGGGCAATTATCAGCTCAATGGAAAAGCAAACTTAATGTTAACAGCGTGTGATTTACACTTTGGAGTGAACTAAGCCAAAGACCACTGCCCTATTTGATTGAATATTTCCGGGGTTGCTTCCATCTCGTGGGCGATAATGTGATAAGTGTGTGTTGAGggaatgtgatttgatttggggACCCAAGCTTAACCAGTTAATGGACTGACTGTGTGTACCTGTTTCCAATTTCCTACAGCTCTATGTGTGGTGTGGATCCATATTATTATTTGGGGAGGGAATTCCACATGTATTTCACATGTATTGTATGTAATTACACAAGCAGGCTATTCAATTGTAGTCATTGTACTGAATCTGAATGTGTACCAACACTGAAGTGTAGGACTCCACTACTAAATACATGTATGTGATTATTATGTAACTACTGCTGCATTAGCTAGAATTAGTATAACGAGGGAACTGTTTCCTACAACATCCCATATCAAATAAACACTAAAAATACAGTTTTTAACCACTGCACAACGTTATTCAGTAGTATCAATATGTTGGCCTTGAAGTAAAATGTGGTACCACTTTATGCAGTAGCACTAAGCATATTGCCTGATTGGACCACCTTTGGTGCTGTCCATTCTATGCCTGACTGAAATCATCCGATACAGAACCaatagttaaacacacacacacacacacacacacacacacagaaagacatgaGAAACGAGTCGTGACTTCCTAAATACATGTAAAAGAGAGACCCCTGTTTCTGACTAAGCCCACACAGATATAACCCTGGGAAGGGACGTCACTAGAGATTCATGGATAGGGGGGCTATGCCTCTTTTAGGGGGGTCTGGTATACTCCCTCCTGTCCGTTTACTGTTAGCTAGCAGTCTCAAGCCACCGAAGTATATAAAGTTACAAGTAGGCCTAACGGTGCATGTACACTAGATAATGGTAAATTGCCGTGAGCCACTTAGGCCGCCAGTTGTGACtcgcttgtgggcgtgctggcagcATGTTCGATTGTGCGTCAATTATTCAGCAGagcaagtttgtatgaaggtTCTGGTTATTAAATGGGTACATAGTTCAATAGTAATATAATCTGAAACACCCTCTGGTGATGAACAAACTTTGCTGCCCCGTTTCCAATTGTCCACATGgctgggagaacctattcaaATAACTTGTAACTGGAGATTCCTTCAAAACAATTGCCTACAGTTAACGTGTAGGGCACTGcaaggttgggtgaccagggTCATCTGGGACTGCCTCCTGGAGGAATTCAGGTGTGTGAAGGCTACCTGTGTCCTGCATAACTTAATGAGGATGGACACGAGGACCAGGAGGGGATCTGCAGCTCGCCACCGTGTCCCAGAGGAGAAGTCTGCTGCTCTGCAGGATGTTTCAAAGATGGGGTCCAACAACGAAGCAAGAGAGGCAATCCGTGTGCGGAAGATCTTCACTTCTTCGAAGAGGGTGCTGTTCCCTGGTAACAACATAGACTAGACTATGCACAATCAAAGGCTCTTTAAGAGCCATTCACATTGCAATAAGAGTATTCTTTCATTTACTTAGCtatgtcaactgcagttattCAATTCCCAGTTTCTACTTCTCAGGTCAGGGTGCTGTTTAGGTAAGGTTGTGATGTCTGTACACAAACAAAACTGGCTATTTTAAATAACCCATATTGAAAAAATGTAGAACAATTAGACACCCTATAACCCACACACTCATGTatcaatctgattgatggattgtgttGTGCAGTAATCAGGCTCAGGTGTATAAATGtggctccttccaccttcaaagaataggcaagagggccaaccatggagaatagtaagacacttCATTATTTCTATAACTACGCTATATTGTTTGTCCTCGAGTGTCTGTtcatgtttttcagcataaagtactctgcagccacttagtgtgatgtggacaccaggtgagaccacacacacagattcctgttgaacTCATTTTCccaataacagtctctctccttcacttcctcctcttctccctaaatcctctaggttatatcagctgagTCGGTGAACCACTCCCACATCTGAACTGGCgacagagggcacagcatgatcagagatatgttttgatgtgagagaggatgccaaccCCCAGGCCCATCATCGTCACCTCACCCATAATGCAATTGTGATGAACAGAGAATATTTGGGTAGCACTGTGACtcattaatcatatgctgccTTCCCTGCCCctatgttcttacctctttccctttgtcttttacacctctctctccacctctttcttcctctgttttcATAATGCACAACAGATaagcattgaagtacagattgaacttgtatttataatattacaaatataatatttattatgcatgtatttataacacttggataatgaacttctttcaataaagcgtttcacattctcta

Function

NR:

description
uncharacterized protein LOC100191015

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035502.1 True 4525 mRNA 0.43 3 23228043 23233566

Neighbor

gene id symbol gene type direction distance location
LOC110485982 LOC106567469 coding downstream 7787 23216183 ~ 23220256 (-)
LOC110485976 LOC106585643 coding downstream 150934 23071006 ~ 23077109 (-)
LOC110485975 apoh coding downstream 157396 23065422 ~ 23070647 (-)
LOC110485974 LOC106585623 coding downstream 234528 22915614 ~ 22993515 (-)
LOC110485111 LOC106588440 coding downstream 389135 22837985 ~ 22838908 (-)
LOC110485981 NA coding upstream 5078 23238644 ~ 23250237 (-)
LOC110485986 LOC106585679 coding upstream 208921 23442487 ~ 23499325 (-)
LOC110485989 LOC106585705 coding upstream 266436 23500002 ~ 23506509 (-)
trnas-aga-59 NA coding upstream 377146 23610712 ~ 23610793 (-)
LOC110485994 LOC106585744 coding upstream 438112 23671678 ~ 23677780 (-)
G1155571 NA non-coding downstream 119973 23105008 ~ 23108070 (-)
G1155513 NA non-coding downstream 216541 23011185 ~ 23011502 (-)
G1155491 NA non-coding downstream 245998 22981835 ~ 22982045 (-)
G1155490 NA non-coding downstream 246273 22981539 ~ 22981770 (-)
G1155489 NA non-coding downstream 246866 22980968 ~ 22981177 (-)
G1155704 NA non-coding upstream 87580 23321146 ~ 23325274 (-)
G1155773 NA non-coding upstream 151530 23385096 ~ 23385296 (-)
G1155774 NA non-coding upstream 154563 23388129 ~ 23388341 (-)
G1155776 NA non-coding upstream 155657 23389223 ~ 23389559 (-)
G1155777 NA non-coding upstream 156968 23390534 ~ 23392324 (-)
si:ch211-214c7.4 LOC106588372 other downstream 764368 22462260 ~ 22502075 (-)
LOC110485947 LOC106588570 other downstream 1154618 22069722 ~ 22073496 (-)
LOC110485936 LOC106588110 other downstream 1762777 21262691 ~ 21465440 (-)
si:dkey-237i9.8 LOC106588103 other downstream 1967400 21247188 ~ 21260739 (-)
G1155782 LOC106585672 other upstream 168813 23402379 ~ 23403632 (-)
G1156460 LOC106585723 other upstream 365941 23599507 ~ 23601690 (-)
LOC110485996 LOC106586353 other upstream 473191 23699036 ~ 23707634 (-)
LOC110486013 LOC106585880 other upstream 853138 24086694 ~ 24134220 (-)
G1156864 NA other upstream 1065353 24298919 ~ 24300232 (-)

Expression


Co-expression Network