LOC110485985 (LOC106585672)



Basic Information


Item Value
gene id LOC110485985
gene name LOC106585672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23402396 ~ 23441245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036940645.1
CTTAACAGCTGTAGTCTGAGGCACACAGGCCCCCCTCAGTCGACACAGTCAGAGAAGGGAGAGGGCCGTGAAAACTAGGGCACAACAAAACTGACCCCTTTCCCTCAAACCAGAGGCACAGATCCAACAGAGAGAGCGTGGGAGGGTGTAggctggggaagagagagacatttgTGGAAGGCTGTGTGGCTGTTAAAGGAGCGAAGCCCGCGGAAATCCACCACCGACGTCCCCAGAAGTCCGATGTCCCCAGAAGTTTGATGTCCCTTCAAGTCTGATCCAAGTGAGGACCTCGGCACTACGCATTTCTTCTTCATTGTCCATTTTCTGGTCAGTGTTTCCACGTACAAACTGCACCATGCACAAGCGTACGAAGGTGAAGATGACGTTCTTTGTGATCCTGGTGGGTATGGCGTCCATGTTTACGGCGGTGGTGACGGACCATTGGGCCGTGCTGAGCCCGCGGGTGGAGCAGGTGAACGCGACGTGTGAGGCGGCCCACTTTGGCCTCTGGAGGCTGTGTAAGAAGGTCATCTACATCAGTGAGGCGGACTACAATGGAAAGGGTTGTGGCCCCATCAGCTTACCTGGAGAGTACAATATCTCGGCAGCGGCCATCGCCATCTTCAGCCTGGCCTTTATGATCCTGGGCACCTTGTGTCTCCTGTGCTCCTTCAAGAAGGGAAATGACTACATCCTCAAACCTGCCGGAATGTTCTTCGCTTTCGCAGGTCTGTGCGCCATCATCTCAGTGGAGGTGATGCGTCAGTCGGTAAAGCGGATGATCGAGAGCGAGGAAACCATCTGGATAGACTACTCCTACGCCTGGTCCTTCGCCTGTGCCTGCGCCGGCTtctgcctcctcttcctcagtGGCCTCGGCCTCCTCCTGCTCTCCATGCCCCGCATGCCCCAAAACCCCTGGGAGTCCTGCATGGACGCTGAACACGAAGTGGAGTAATAGACAGAGGGATGAGACGAGGAAGAGAGTGACACTTTGTTTTAAAAGCAATAAGATCACGATCAAGATAAACTTTGTGTTGTGATATAGTGGAACCAGAGGATTATTTCACACAGCGCTTGGGAGCAGTCGAGTcctgcatgctttcccgagtcaTAGTGGAGGATCACACTACATAGTGTCAtcgtgtgactccaagtttatGCCGATGTGATGGTTATTAAATATTTGCAGATAAAAGGCatttccactgccatttctcgcattattaattttacagacacataAAACATCCCACCATGTCGATTGATGCAAATGGTCTGTTTTATAAAACTGCACCGGcatttcctgtttccatcagcccagTCGTTACTTTTTTTCCAAGTGTCCGGTAATTAATCAGcatgaaatggttggatggaaacctggttaatgaTACATTTTGACATGTTATTTAATGGTATAAATAGTAATGGATTGACATTTGACCTATGAATCCACCTTTTTCACAATGTGTGTTTTTTATGATAATTCTGTACATATGTCAATCAATTTATAACTGGGATGGTTCTGTTATTTTCAGTGCATCAAGCACTTGCAATGAATTTATGTCAAATGTATTCAGGCAGATTAAGATAAACCAGGAAATTGTTAATCAGATGCCAAATTATTACTTCATAATTAAGCATTTAATATTGCAACTCCTTTAAAATTCACAGCATACATACCACTAATTGTGATGTAAAGAAGTGATATTAAAATGATCTATTTTAATTATAGAATTTAGGTCATGTTAGATTTATAGTgggaaaaaaaaaagtattttcagTATTCAAAAGGACTTTTATAAGAATAATACATGGCTGTCGCAGCAAATTGGAGAGGCAAATAATGTTGTCTAGTGAGTTTAGTGTGCATACCAGGCAGAATGCTAAACACCAACCGTCCACTGAATGCTTGGGTTGGAAAAGATTCAGTTCTAGCAGGTGCACAccaaacacaaaaaaaactgcTTTTTAAGAGCTGAACACATTGCAGCCTAATTTCTTGGACTATTTGATCCCATTCAATTTAGGCGAACCAAGTActctatttttgttgttgttgatgaaggTATCAATTTCTTCTAGTTCTGATTTTAGTTAGCATCTGATGCATTTAACATCAAACTTGGAGGGTACTCAGTAGCCAACACTTTCAGGGGCATTCAGCTCAACAAAACTCGAGAGCCTTAATATGTACCATTTTAGATCCAGTAAATAGCTTTAATAGAAATATCTCCCAAATGTCCAGTCTTTTCAGCCAAACTAAACTGGACTTCTCTCCCATGTTACCAATCGTCTTTGGCTTCTATGGACAGACAGGAAATAGGTGTATTGTAAAAACCCAGTGGGTACATTCTTTTTGTTATGGATGATACTGCTTTTGTATTTACTCAGTGGAAGTGTTAAACTAGGATTCTTTTTGATACAGAAATGTACATTGCTAATGTCTCAAAACAAGCTTGCAAGTTCTAATGCCATTGCTTTCCCCATTTGATATTTGATTGAATAGATGAGGGCAGTTGATAAAGGTACTTGGCACTATGGTTACTAAACACTACATAAGACTTTGTGACTGTAGCAGAACAAAAAATTGCTTCGCCATCTTATCTGTCCTTGTCTGTTAGAACTAGCTTTTGGTATGGAATGATGAATTACAGCACAGTGGTTGTCTTCAGTTGTGCGTACATGTTATGATAACCATGCATTTCTAAATACAATAAATTCACTGATATCTAGCTTGGACGAAA
>XM_021557255.2
GCTGTAGTCTGAGGCACACAGGCCCCCCTCAGTCGACACAGTCAGAGAAGGGAGAGGGCCGTGAAAACTAGGGCACAACAAAACTGACCCCTTTCCCTCAAACCAGAGGCACAGATCCAACAGAGAGAGCGTGGGAGGGTGTAggctggggaagagagagacatttgTGGAAGGCTGTGTGGCTGTTAAAGGAGCGAAGCCCGCGGAAATCCACCACCGACGTCCCCAGAAGTCCGATGTCCCCAGAAGTTTGATGTCCCTTCAAGTCTGATCCAAGTGAGGACCTCGGCACTACGCATTTCTTCTTCATTGTCCATTTTCTGGTCAGTGTTTCCACGTACAAACTGCACCATGCACAAGCGTACGAAGGTGAAGATGACGTTCTTTGTGATCCTGGTGGGTATGGCGTCCATGTTTACGGCGGTGGTGACGGACCATTGGGCCGTGCTGAGCCCGCGGGTGGAGCAGGTGAACGCGACGTGTGAGGCGGCCCACTTTGGCCTCTGGAGGCTGTGTAAGAAGGTCATCTACATCAGTGAGGCGGACTACAATGGAAAGGGTTGTGGCCCCATCAGCTTACCTGGAGCGGAGAACTGCACTTACTTCAAACACTTCACTCCTGGGGACGAGTCTGAGATTTTTGAAGTCAAAACCCAGAAAGAGTACAATATCTCGGCAGCGGCCATCGCCATCTTCAGCCTGGCCTTTATGATCCTGGGCACCTTGTGTCTCCTGTGCTCCTTCAAGAAGGGAAATGACTACATCCTCAAACCTGCCGGAATGTTCTTCGCTTTCGCAGGTCTGTGCGCCATCATCTCAGTGGAGGTGATGCGTCAGTCGGTAAAGCGGATGATCGAGAGCGAGGAAACCATCTGGATAGACTACTCCTACGCCTGGTCCTTCGCCTGTGCCTGCGCCGGCTtctgcctcctcttcctcagtGGCCTCGGCCTCCTCCTGCTCTCCATGCCCCGCATGCCCCAAAACCCCTGGGAGTCCTGCATGGACGCTGAACACGAAGTGGAGTAATAGACAGAGGGATGAGACGAGGAAGAGAGTGACACTTTGTTTTAAAAGCAATAAGATCACGATCAAGATAAACTTTGTGTTGTGATATAGTGGAACCAGAGGATTATTTCACACAGCGCTTGGGAGCAGTCGAGTcctgcatgctttcccgagtcaTAGTGGAGGATCACACTACATAGTGTCAtcgtgtgactccaagtttatGCCGATGTGATGGTTATTAAATATTTGCAGATAAAAGGCatttccactgccatttctcgcattattaattttacagacacataAAACATCCCACCATGTCGATTGATGCAAATGGTCTGTTTTATAAAACTGCACCGGcatttcctgtttccatcagcccagTCGTTACTTTTTTTCCAAGTGTCCGGTAATTAATCAGcatgaaatggttggatggaaacctggttaatgaTACATTTTGACATGTTATTTAATGGTATAAATAGTAATGGATTGACATTTGACCTATGAATCCACCTTTTTCACAATGTGTGTTTTTTATGATAATTCTGTACATATGTCAATCAATTTATAACTGGGATGGTTCTGTTATTTTCAGTGCATCAAGCACTTGCAATGAATTTATGTCAAATGTATTCAGGCAGATTAAGATAAACCAGGAAATTGTTAATCAGATGCCAAATTATTACTTCATAATTAAGCATTTAATATTGCAACTCCTTTAAAATTCACAGCATACATACCACTAATTGTGATGTAAAGAAGTGATATTAAAATGATCTATTTTAATTATAGAATTTAGGTCATGTTAGATTTATAGTgggaaaaaaaaaagtattttcagTATTCAAAAGGACTTTTATAAGAATAATACATGGCTGTCGCAGCAAATTGGAGAGGCAAATAATGTTGTCTAGTGAGTTTAGTGTGCATACCAGGCAGAATGCTAAACACCAACCGTCCACTGAATGCTTGGGTTGGAAAAGATTCAGTTCTAGCAGGTGCACAccaaacacaaaaaaaactgcTTTTTAAGAGCTGAACACATTGCAGCCTAATTTCTTGGACTATTTGATCCCATTCAATTTAGGCGAACCAAGTActctatttttgttgttgttgatgaaggTATCAATTTCTTCTAGTTCTGATTTTAGTTAGCATCTGATGCATTTAACATCAAACTTGGAGGGTACTCAGTAGCCAACACTTTCAGGGGCATTCAGCTCAACAAAACTCGAGAGCCTTAATATGTACCATTTTAGATCCAGTAAATAGCTTTAATAGAAATATCTCCCAAATGTCCAGTCTTTTCAGCCAAACTAAACTGGACTTCTCTCCCATGTTACCAATCGTCTTTGGCTTCTATGGACAGACAGGAAATAGGTGTATTGTAAAAACCCAGTGGGTACATTCTTTTTGTTATGGATGATACTGCTTTTGTATTTACTCAGTGGAAGTGTTAAACTAGGATTCTTTTTGATACAGAAATGTACATTGCTAATGTCTCAAAACAAGCTTGCAAGTTCTAATGCCATTGCTTTCCCCATTTGATATTTGATTGAATAGATGAGGGCAGTTGATAAAGGTACTTGGCACTATGGTTACTAAACACTACATAAGACTTTGTGACTGTAGCAGAACAAAAAATTGCTTCGCCATCTTATCTGTCCTTGTCTGTTAGAACTAGCTTTTGGTATGGAATGATGAATTACAGCACAGTGGTTGTCTTCAGTTGTGCGTACATGTTATGATAACCATGCATTTCTAAATACAATAAATTCACTGATATCTAGCTTGGACGAAA

Function


NR:

description
voltage-dependent calcium channel gamma-1 subunit-like

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036940645.1 False 2753 mRNA 0.43 3 23402396 23441245
XM_021557255.2 True 2821 mRNA 0.43 4 23402403 23441245

Neighbor


gene id symbol gene type direction distance location
LOC110485984 LOC106586345 coding upstream 11284 23367205 ~ 23391112 (+)
LOC110485983 LOC106585659 coding upstream 48474 23330234 ~ 23353922 (+)
LOC110485978 LOC106564882 coding upstream 77095 23080663 ~ 23325301 (+)
c13h17orf67 LOC106564992 coding upstream 792025 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 806123 22580737 ~ 22596273 (+)
pitpnc1a LOC106585713 coding downstream 70461 23511706 ~ 23591433 (+)
LOC110485992 LOC106585723 coding downstream 154631 23595876 ~ 23608606 (+)
LOC110485993 LOC106585727 coding downstream 170580 23611825 ~ 23668173 (+)
LOC110485995 ima2 coding downstream 238509 23679754 ~ 23685732 (+)
LOC118938564 NA coding downstream 240275 23681520 ~ 23681645 (+)
G1155229 NA non-coding upstream 2334 23399485 ~ 23400062 (+)
G1155228 NA non-coding upstream 3244 23398942 ~ 23399152 (+)
G1155211 NA non-coding upstream 5734 23396564 ~ 23396662 (+)
G1155212 NA non-coding upstream 6975 23393110 ~ 23395421 (+)
G1155227 NA non-coding upstream 16961 23385091 ~ 23385435 (+)
G1155277 NA non-coding downstream 15958 23457203 ~ 23457653 (+)
G1155294 NA non-coding downstream 32422 23473667 ~ 23474442 (+)
G1155309 NA non-coding downstream 57578 23498823 ~ 23499217 (+)
G1155279 psd12 non-coding downstream 60828 23502073 ~ 23506480 (+)
G1155343 NA non-coding downstream 127830 23569075 ~ 23569392 (+)
G1155006 LOC100136012 other upstream 443045 22958932 ~ 22959351 (+)
G1154412 mcoln1 other upstream 890656 22511379 ~ 22511740 (+)
G1154335 NA other upstream 946047 22439636 ~ 22456349 (+)
G1154234 NA other upstream 1242967 22158571 ~ 22159429 (+)
G1156089 NA other downstream 557401 23998646 ~ 24003968 (+)
G1156247 NA other downstream 885538 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1322857 24764102 ~ 24764346 (+)

Expression



Co-expression Network