LOC110485992 (LOC106585723)


Basic Information

Item Value
gene id LOC110485992
gene name LOC106585723
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23595876 ~ 23608606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557262.2
GTCTCGCGAGGTTTGCTCTTTTCATTTTCTTCATCCAGCATGGCGACGCTGTGTGAGGGATTCACGTTGTGCGGACTTGTACAAACTCAAAATGCTTCAGATTCGCCAATTCAGGGAATTGAACTGGATGAAGACAGTGACCATGCCGTCGTCACCGATTCCACGAGATCTGTCACTTTATACAAGGTTTCAGACCAGAAGCCTTTGGGCAGCTGGACGGTGAAACAGGGACAGTTGTTGACTTGTCCTGCAGTGTTCAACTTTCAGACCAAGGAGTATGTAGTGGTCTCCGACAACAAGGTCATCAGAGTTTGGAAAGATGAAGACCTCAATTTAGACAAAGCATTTAAAGCAACTGTGACTGCTGATGTATGGCGGGTCCACTCTGCCCCAGGGGGAGAGCCTGTGGTGCTTTTTCAGAGAGGCGCAGTCAGATTCCTGGACTCCCTCCTCTCCGCCCCCCAACAGCCCATAGAGGATGTCCTGTCAGAGGAGGAGGTCATAAGGTGGAGCGCCAGCATCGTGGCAGAGGAACAGCACTTTGTCCTCTTCACGACAGAGCAGAACGGGGAGTGCTGCCTTTATGTGCAGAGGCTCAACCCCAACACCCTACAGAAGTATAGGCTGGAGAGAGAAGACTCTGGAGCTTCCCCATTGagtttctctgcctctctccggGACAAACACCTCAACCTGCTCTACCTGTACCCTAACGGCTGTGTGTACCAGAGTGTGGTGGCGGCGCGGGGGTATGTGGGGCTGGAGGGGGTGCAGGACCTGCCTCGCAGCCTGCGCCTGAGGCTGCCCGTGGGGGAGGGAGAGCTGGGAGCTGCCTCGGCAGTAGCCCTGGACGAAGCTCATGTGGCTGTGGTGGGGGTGCCCCATCCCTCCGCCAGAACTGGCAAAGaTTTCCTCTGCATCTGGAATACTAATTTCCAGACTCTTCAGGCTGGTAAGGAGATGGCGGGAAGAATCCATGGACAGGTCTGGTGTTATTTGGGAAAGCTGTTTGTCCCTCATGGCAAGGCCCTCTCCATCATTCCCTACGAGTGTCAGAAGTCGTCTCTGGCCTCGGCCCTGGGGAAACTACGACACACTGGGATCGCAGTATCCAAATCGTCGGTGGCTGTGCCCTCTTGGAACACCCTACTCCATGGGGATCAGCCACAGGGGCCCACCAAAATAGTGGAGACCAGGAAGAGTAAGCTGAGCCGGAAGAGCCAATCAGCGCAAGCCCTCACAGTGGACCAAGTACTGGAGCTTATCAAGACTGGTCCAGTGGATGAGGTCCAGAGGGAGGTGGAGGTCCTGGTCTCCAGAGGCGATGCCCAGGACCTGCAGCTCTCGGTGGGCCAGCTGGCCTGCCACCTGGTGGCCCGAAGCCAGGCCGAGACAGCCTTCTACACTCCCGTGGCCCTGGCACAGCTGGTGCAAACACAGTTTCTTTGCCACAGCGTGTGTCCCGGCCTCCTGCTGCTGTCCCTGGAGCACAAGGACTACTTCCTGTGTCAGCTGTGCCTGCAGCTCTTCCCAGACATCCCTGAGGTGGTCACGTGTGCCTGTCTCAAAACCTTCATCAGTGTGCCAGACGGCGACGTGGAGATGGTCAGTCTGGAGCCGGACAGTGTGTCCTTCATGGAGGGCCTGGTGGCGGCGGGGGCCCGGGGGGGCCAACAGAACGGTTTCAGCCCTCCTCTGTTTGAGGAGGACAGCTGTGACGCCAACCACCAGCCCAAACCTCCCCAGGATAAGAAGAACCACACACTGCAGCTAGAGGCCTGCCCCGTGGGTCTACACAAGGCTGTGCTACTTAATGAGGTCCTGCAGACGCCGTACAGTGACAACTTCCTGCTCCCCCACCTGAAGGACCTCGACACTCAGCAGGTTATTcTCTTTCTTCAGTACCTCCAGTTTGTCTATTTGAAATATTCCCAAGACGTCTACACACAAACGGCAGGTTTGAGATCGCCCACGATGACACAGATCATTGACTGGGTGTGCTTGTTGTTGGATGCTCATTTCACAGTCTTGGTCATGGCTCCTGATGCCAAAGGATTGTTGTCTAATCTCCAAAGCTTTGTCAAGTCCCAGGTGAAACTATTCTCTGAACTGGGGAAGATTGAGAGCAGCCTTCAAGAGCTCCACAAAATGAAGCTGTCCAAGGACATCAGCCAGTACTCCATAGAAGTCATTGAGCTGTTTTAGGCCATATTTACAGATTATTTCCAATCAAATTTTGCCGTTGACcttctctccccatttctcttgGTCAGTTGCATCGTTGTGTTCCACTTTGTATTTGGTCCACTACCAAAAGGGCCATGGTTCAACTGCTGTATCATACCTACGTACTGTAGATGCCTacactggtcccagatctgcttgTGCTTTCATCGATGAGCATAGGAGTTGGCTGTGCAGcgcccaaacagatctgggatcagtctAGTAGATTTTCAGGTATGTAGAGCAAATTATTTTCTAGTTCTGAGCTGTGGCATTGCCGAGGCCTCGGTCCCTATAGCCATGTGATTTGTTTGTATAATCTGAGGGCATGTGTGGTAGAAATATTTGCTAATATGAATTATGTAAACAATATAGTCCCATGATATTGCAACATGGCATCGATATTTTTAACCTATGTAACATACTGCCCCTTTATAGGAATATACAAAATACTGACATGTCTAAAAATGGGAATCAACCTTCCATATGGTTGACAATCTTGTGGTTAAATGTTGTATTTCCTGAAGGCTATTTGGACTGTGAATAACTGTACATCTCCCAATCACATTGTAGTGTAGCACCATGTTTTCTATAGATACATTTTGTGTTGCATTCTAACAAAGTCAATTCTGAATTCATATGACAGTATTTGTATTAAAAATACCCTATGCACAAAA
>TU1318207
GCGACGCTGTGTGAGGGATTCACGTTGTGCGGACTTGTACAAACTCAAAATGCTTCAGATTCGCCAATTCAGGGAATTGAACTGGATGAAGACAGTGACCATGCCGTCGTCACCGATTCCACGAGATCTGTCACTTTATACAAGGTTTCAGACCAGAAGCCTTTGGGCAGCTGGACGGTGAAACAGGGACAGTTGTTGACTTGTCCTGCAGTGTTCAACTTTCAGACCAAGGAGTATGTAGTGGTCTCCGACAACAAGGTCATCAGAGTTTGGAAAGATGAAGACCTCAATTTAGACAAAGCATTTAAAGCAACTGTGACTGCTGATGTATGGCGGGTCCACTCTGCCCCAGGGGGAGAGCCTGTGGTGCTTTTTCAGAGAGGCGCAGTCAGATTCCTGGACTCCCTCCTCTCCGCCCCCCAACAGCCCATAGAGGATGTCCTGTCAGAGGAGGAGGTCATAAGGTCAGACAATGGACACCAGTCTGGATTAGTGATCCGTAACCTTCGGGTTGGTTGGCTTTAGTCCCACCACTATAGAGGCTGGTTGGCGTATTGGATATAAATACGATAtggatataaaaatatatacagttgaagtcggaagtttacatccacttaggttggagtcattaaaactcatttttcaaccactccacaaatttcttgttaacaaactatagttatggcaagtcggttaggacatctactttgtgcatttttttacagacagattatttggcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaattcagccaagaccccagaaagaaatttgtagacctccacaagtctggttcattcttaggatcaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgctagtataaacaccatggtaccacgcagccgtcatacggctcaggaaggagacgcgttctgtctcctggagatggtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacgggtacaaaagtatctatatccacagtaaaacgagtcctatattgacaaaaCCTGAAatgtcgctcagcaaggaagaagtcactgctccaaaaccgccataaaaaagccagactacggtttgcaactgcacatggggacaaagatggtcgtttttggagaaatgtcttctgctctgatgaaataaaaataccaCTGTTTGGTCATGATGACCgctgttatgtttggaggaaaaagggggaggcctgcaagccaaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgagagtgctttgctgcagagggactggtgcacttcacaaaatagatggcatcatgaggtaggaaaattatttggatatattgatgcaacatctcaagacatcagtcaggaagttaaagcttggttgcaaatgggtcttccaaatggacaatgaacccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccttggcctcaatcctatagaaaatgtgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctttgtcaggaggaatgggccaacattcacccaacttattgtggcaagcttgtgggaggctacccaaaacgtttgacccaagttaaacaattgaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgaaccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctcctattattctgacatttcacattcttaaaaataaagtggtaatcctaactgacctaaaacagggaatttttactaggattaaatgtcaggaattgtgaaaagctgatttgaaatgtatttggctaaggtgtatgtaaaacttccgacatttaattgttttattttaacctttttttatttaactaggcaagtcagttaagaacaaatgtttattttcaatgacggcctaggaacagtgggt

Function

NR:

description
nucleolar protein 11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557262.2 False 2903 mRNA 0.51 18 23595876 23608606
TU1318207 True 2256 TUCP 0.43 4 23595918 23599003

Neighbor

gene id symbol gene type direction distance location
pitpnc1a LOC106585713 coding upstream 8178 23511706 ~ 23591433 (+)
LOC110485985 LOC106585672 coding upstream 154631 23402396 ~ 23441245 (+)
LOC110485984 LOC106586345 coding upstream 204764 23367205 ~ 23391112 (+)
LOC110485983 LOC106585659 coding upstream 241954 23330234 ~ 23353922 (+)
LOC110485978 LOC106564882 coding upstream 270575 23080663 ~ 23325301 (+)
LOC110485993 LOC106585727 coding downstream 3219 23611825 ~ 23668173 (+)
LOC110485995 ima2 coding downstream 71148 23679754 ~ 23685732 (+)
LOC118938564 NA coding downstream 72914 23681520 ~ 23681645 (+)
LOC118938638 NA coding downstream 74851 23683457 ~ 23683591 (+)
LOC118938639 NA coding downstream 76235 23684841 ~ 23684975 (+)
G1155901 NA non-coding upstream 3726 23591897 ~ 23592150 (+)
G1155351 NA non-coding upstream 12169 23583489 ~ 23583707 (+)
G1155349 NA non-coding upstream 13337 23582316 ~ 23582539 (+)
G1155348 NA non-coding upstream 13983 23581687 ~ 23581893 (+)
G1155958 NA non-coding downstream 101721 23710327 ~ 23711035 (+)
G1156004 NA non-coding downstream 165603 23774209 ~ 23774491 (+)
G1156000 NA non-coding downstream 166007 23774613 ~ 23775018 (+)
G1156025 NA non-coding downstream 259464 23868070 ~ 23868285 (+)
G1155006 LOC100136012 other upstream 636525 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 985597 22606256 ~ 22610371 (+)
G1154412 mcoln1 other upstream 1084136 22511379 ~ 22511740 (+)
G1154335 NA other upstream 1139527 22439636 ~ 22456349 (+)
G1156089 NA other downstream 390040 23998646 ~ 24003968 (+)
G1156247 NA other downstream 718177 24326783 ~ 24328963 (+)
G1157117 NA other downstream 1155496 24764102 ~ 24764346 (+)
G1157292 NA other downstream 1492934 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1804503 25410869 ~ 25419361 (+)

Expression


Co-expression Network