XLOC_030236


Basic Information

Item Value
gene id XLOC_030236
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 34828804 ~ 34837166 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061742
AACATTTACTACATTTATAACATCTGATACACCGGTCTACATACAATTATACAAAACATGCTCTATGTACATACAAATTATTccttaaaaatgtcaacaataaaTAAAGTCTAtgcaacaaaagaaacaaaacacacagtATGATAagccattgcaaaaaaaaaaaaaaaaaagtcagtaaatACACATTAAATTCTTGTCGGTTTAACTCAAGTAACATATTAACTCCTCATACTGGTCCTTAGTCTTTTTTATAACACTCATGGCTCGAATTTTCTTTTAAGTATGACTAAAATGACAGCAGGccttaatttatgtttttttaataagagCAAAAAGTGATGATGATGTTGCTCcacgtttaaaaaaaacataatgcataAAGACTTCAAGCTGATATGGCAACACACTGACCTAAAGTATCAACATTAATTTGAATGatgaatttaaagggatagttcacccaaaactgaaaatgtactcactatttactctccttcaagtgAATTTAAATCTTGAAATGTTTCAttattctgatgaacacaaaataagatatttttaagaaagttgaaaacctgtaaccatttacttccatagtagaaaaaacaaacactatggaagtcaatggataaaGGTTTCcggcattattcaaaatatctttcttttgtgttaatcagaaaaacaaaagttaaacaggtttggaaatagtgtgagtaaatgatgacatttcagttttaggtgaactgtccctttaatctgACTTTTCAAGCCATCACTGCACATCTGACTTTATAGACAACAGCTTACGAGCACCAAAGAACCGAACGCTCTCGAAAGAGCAAGGCAGGACACATTTTCCACATTCATTTCCTTACAGACATTTGAAAGCAGTTATTAAATGTGAGAAAGTGAATTTGAAAAAGGTGAAAATGTGATTCTTTATtttaacacacactcacacatacacacatgcatacataacCCTGACTCACACAGTAGGCGGCGAATGCTTCTTTAAACCAAGCTGTCATTTAGCTCCTGTAAGAAAGGGTCAGTGTTTTTATGTGCTGATGTAAAATGACATGGACAGTTGGAGGAAAATACACTGCAGCAAAGTGGGTGGGGGATTtgtattttgtgtgtatgtgactAAACGTGTGCTGAAACTGCCTGAACTGATTCTGTCACTGGAGGCTCCGGGCTATAAAACAAAACTCAAGCCCCATCTCAAACACGGACAAAAGAAAGTGCTATGATGAAGTCTGGAGAATGTCACTGAAGGCCAAAAGTACGCTCGGATTGAAGAAGACAAAAATCCAATGAAAAAAAGCGGGATCAGATCCTCAAACTGCAGATCAAAGAGCAAACGGTTTGTTTGAACAGGGAGTGAAGCTTGTTTGTTGATTTCAGAGATACACGATGGTCTCCTCTCCATCAGTATCTCTGTTCTCTGTCTCCATGCTTAGGAAGGGCTGGCTGACGAGCAGGACATCAGTTTGATGGAGTCCCGCTCCCGTTACCCCTGCTGACCAAGACTCTTCAACATGGCTGATCTGACCCACATCTGTCAGGACAAGACAACTCCTCAGAGACGTCCAGCTGTGGTCGGATGCTCCAGCAGAGCTGGGTCTGTGGTTGGATCGGGCTAGCAGTGAATTAAGACTGTTCTGAGCGCTGGGAGAATCTGAGTATCCTATAGATCCTGAGTGCACATGGACAGTCTGGTGATGATGCTGTGGATGATGCTGAAGATGGAGGTGCCTGTTATTTACAGAAGAAGATATGAACGCTGCCTCATTGACAAAAATAGAGCCATGCTCGTCCTGAATGCCCAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061742 True 1836 lncRNA 0.39 2 34828804 34837166

Neighbor

gene id symbol gene type direction distance location
XLOC_030234 NA coding upstream 31453 34643447 ~ 34797351 (+)
XLOC_030235 NA coding upstream 97362 34721137 ~ 34731442 (+)
XLOC_030233 enc1 coding upstream 190180 34622320 ~ 34638624 (+)
XLOC_030232 gfm2 coding upstream 228094 34578479 ~ 34600710 (+)
XLOC_030231 aif1l coding upstream 253302 34549365 ~ 34575502 (+)
XLOC_030237 BX530075.1 coding downstream 83229 34920395 ~ 34921911 (+)
XLOC_030238 ankra2 coding downstream 144418 34981584 ~ 34987273 (+)
XLOC_030239 foxd1 coding downstream 160597 34997763 ~ 34999553 (+)
XLOC_030240 CR377210.1 coding downstream 283882 35121048 ~ 35127014 (+)
XLOC_030241 ptger4b coding downstream 561579 35398745 ~ 35401568 (+)
XLOC_030229 NA non-coding upstream 533731 34293261 ~ 34295073 (+)
XLOC_030228 NA non-coding upstream 891384 33935619 ~ 33937420 (+)
XLOC_030221 NA non-coding upstream 1490335 33332449 ~ 33338469 (+)
XLOC_030243 NA non-coding downstream 678754 35515920 ~ 35527121 (+)
XLOC_030248 NA non-coding downstream 1166795 36003961 ~ 36177578 (+)
XLOC_030249 NA non-coding downstream 1430366 36267532 ~ 36275169 (+)

Expression


Co-expression Network