LOC110485996 (LOC106586353)


Basic Information

Item Value
gene id LOC110485996
gene name LOC106586353
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23699036 ~ 23707634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557270.2
CTGCTGGTGTAATTAGCCGTAGCAGCCTTGGTGGTCCCCAGGCTGTCTGAGGAGCGGCAACTCTCCCAATGTGTGCTGAAGACCAAACTGGAGGAAGCAGCCCTCAAAGTCAGGCAAAGAAAATACATGAAAAGGGCATCAATGGATGACACAATTTTTTTGTAATGAAGTTTGTTGATTGAAGTTACCCCGAAGATCACTTCAAATATCAAGACCTGTCTTTGATGTCCATTACTACCTATTAATGTAGCATTGCTTTAAACCTTCAAATATCTAATGGTCTTGGTCTTACTTTCTATGTTTCCTTTCTGTTCATAACATGACATGGTTGTTCCAGTTATCTTACAGTATTCTGCGACATAACCCTGTGGTGAAAGACAAGGTCCCTTCGACGAATAGGCATCCTGGCCATGAGGGCCAGATACCCACAGTTTAGCTGGAGGCCACAAGATACCATTCAAAGGACCCGAAAACAAGGAAGAAGATGGTAGCCATGAGTCAGAAAGAGACAACGGATCTGAGAGAAGTCAAGCCAACCTCTCACAGAGAGGTAGATGCCAACGACGAGAGATGCAGACGAGACAGAGGGAAAACACAACGAGCTCAGAGTGAAACCTTCAGTGAAATGCAGACGTCCATTGTTCAGGAGGCCGTTCAATGACTGGCCAAAGAGAGACGCAAAGTCGAAGGAAAGTGACGATGAGAGCAATAGCAACGAAGAAAGACGGAGAGCGAAAGCGGCGAAACTCAGATCGCAAAGGAAAGTCGGAAGTCGGAATGCAGATGTCGATAAGCCAGAAAGTGAATGTTATGAGGAAGACGCAAGCGACGACTagtcagaaggaggagggggaaaagagagcCATCCACAACCCGGGGAGAAAACACAACTAACTACAAATGGCCAAACCCATGAGTCTCTATGTTCGGGCGCTTTACTTGATGATGAAATTAGTGATGACATCGCCTGTTTTATGAAGACTCGTGACTGGGGTGATTTGGTCCTCATATCATCTCCTTTGAGGTGTCACACAAAGGAGGACCCTTTGTGATACCATCGAAGAGACGTTTTTTCAACACATTTTCTGGCCTGAATCGAATGGTGAAACACAACACTGGGTGGATCTTTGGTACATTTAGGTAGTCCTTTGACCCATTTCAGAGAGCCAGATGTATTGCCTTACCttggattttttttaaaaggaGACAAGAACGAGTTTTAGTCAAAGGTCACTCTCAGGGGGCTAGGGCGCCAAGAGTATATCTACTGTGTAACTCTCGTCTTCCCCCTCACAATTGAGGAAAGACCAGACAGAGACAACATGAAGATGCAGATGCTGCTGGTGTTGGCTGTAGCAGTCTTGATGGTTCCCAGTCTGTCTGAGGGACGGATCCTCTCAAAATGTGAGCTGAAGAGCTTATTGGAGGAGGCGGCCTTCAAATtcaacctgactgagaaagcCAGAGAGAATTATCTGACAAACAAGGACTTTGTGGCAAAAATCGTCTGCCACGTAGAGAAGGCCACAGGTTTCAACACCAGTTTTGTGTCTCCTTGGAGGGATGATGATGGCCCTGATGGCAGCCCTACCCACCCTGCTAAGGATGATAACCGTCCGACCCGTCCTACCCACCCTCAGCACCCTCCTAGGAGGGGTAAGAGACACGCTGGGGATTCTCACGGGGATTCATCCAGTGCTGAAAGTCATCAGTTCAGCTCATCAAAAGAGGACTCCAGAAAAGAAGACTCCAGCGAAGAGGAGACCAGCGAAGAAGAGACCATGTGGACCCTCTACGGCTTGTTTCAGCTGAGCGACCGTGTGATCTGTGCCAACGGCTCCACTCCGTCTCTGAACCTTTGCCAGATGAACTGCAGTGaTTTGATCGACGACGACGTCAGTGACGACTTGGACTGTGTGGAGACAATCAAACAGACAGTGGAAAGTGGGCCCAGGGATCATAAAATGGCTTTAATGAGAATGTTTAAGCTGCTCTTCCAGAAGGAATGTGTCATGACGGTTGCCTCTAGCTACTTCTCCGAGTGTTGAATGAGAAGCCATGTCAGATGACGACCCCCCCAAAGTGTCTTTTCGCACACTAATCGTTCACTCTTTAAGCAATACATTGAGTTACATAGGGtgaatttacacaggcagcccaactcTAAGCTTTTGCCCAATTATTAACCAATTGCAAAAAATGACCAATGCCAAAAGATCATAATTGAGCTTCCTGTGTAAATGTAGCCATGGTGTGTAACAATTAGTTCTCATCAGCCTCATTTTCACAAAGTACACCAAAATAGAATGTATGTAGAAAGAATAAAGTTTAACAGTATA
>TU1318910
AAGATACCATTCAAAGGACCCGAAAACAAGGAAGAAGATGGTAGCCATGAGTCAGAAAGAGACAACGGATCTGAGAGAAGTCAAGCCAACCTCTCACAGAGAGGTAGATGCCAACGACGAGAGATGCAGACGAGACAGAGGGAAAACACAACGAGCTCAGAGTGAAACCTTCAGTGAAATGCAGACGTCCATTGTTCAGGAGGCCGTTCAATGACTGGCCAAAGAGAGACGCAAAGTCGAAGGAAAGTGACGATGAGAGCAATAGCAACGAAGAAAGACGGAGAGCGAAAGCGGCGAAACTCAGATCGCAAAGGAAAGTCGGAAGTCGGAATGCAGATGTCGATAAGCCAGAAAGTGAATGTTATGAGGAAGACGCAAGCGACGACTagtcagaaggaggagggggaaaagagagcCATCCACAACCCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557270.2 False 2339 mRNA 0.46 7 23699036 23707634
TU1318910 True 431 TUCP 0.49 1 23706757 23707187

Neighbor

gene id symbol gene type direction distance location
trnar-ccg-26 NA coding downstream 19499 23679465 ~ 23679537 (-)
LOC110485994 LOC106585744 coding downstream 21256 23671678 ~ 23677780 (-)
trnas-aga-59 NA coding downstream 88243 23610712 ~ 23610793 (-)
LOC110485989 LOC106585705 coding downstream 192527 23500002 ~ 23506509 (-)
LOC110485986 LOC106585679 coding downstream 199711 23442487 ~ 23499325 (-)
LOC110485997 LOC106585752 coding upstream 2893 23710527 ~ 23716337 (-)
LOC110486002 LOC106585758 coding upstream 46525 23754159 ~ 23761800 (-)
LOC118938243 comd1 coding upstream 171839 23879473 ~ 23890702 (-)
LOC110486006 NA coding upstream 186495 23894129 ~ 23901173 (-)
LOC118938244 NA coding upstream 269337 23976971 ~ 23983202 (-)
G1156471 LOC106585727 non-coding downstream 86446 23611879 ~ 23612590 (-)
G1156466 NA non-coding downstream 90447 23607801 ~ 23608589 (-)
G1155847 NA non-coding downstream 107684 23590747 ~ 23591352 (-)
G1155900 NA non-coding downstream 115017 23583604 ~ 23584019 (-)
G1155899 NA non-coding downstream 115929 23582837 ~ 23583107 (-)
G1156553 LOC106564867 non-coding upstream 62580 23770214 ~ 23772195 (-)
G1156555 NA non-coding upstream 66969 23774603 ~ 23775047 (-)
G1156642 NA non-coding upstream 141079 23848713 ~ 23849446 (-)
G1156659 NA non-coding upstream 160917 23868551 ~ 23868818 (-)
G1156460 LOC106585723 other downstream 97346 23599507 ~ 23601690 (-)
G1155782 LOC106585672 other downstream 295404 23402379 ~ 23403632 (-)
G1155674 NA other downstream 448804 23226214 ~ 23250232 (-)
LOC110485982 LOC106567469 other downstream 479227 23216183 ~ 23220256 (-)
si:ch211-214c7.4 LOC106588372 other downstream 1235361 22462260 ~ 22502075 (-)
LOC110486013 LOC106585880 other upstream 379070 24086694 ~ 24134220 (-)
G1156864 NA other upstream 591285 24298919 ~ 24300232 (-)
G1157012 NA other upstream 859005 24566639 ~ 24566962 (-)
G1157522 ifm3 other upstream 1363852 25071149 ~ 25103009 (-)
G1157525 NA other upstream 1369513 25077147 ~ 25080569 (-)
G1156547 NA non-coding downstream 265 23705995 ~ 23706492 (-)

Expression


Co-expression Network