LOC110486005 (comd1)


Basic Information

Item Value
gene id LOC110486005
gene name comd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23878481 ~ 23890527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557285.2
GGGCATACACATGACAGGAGTCACGTGACCCGTGGGGCTGAAACATGGCAGATGTCGAAACAACCAAATCTTTGAACGGTTTGCTGAATGGAATAGCAcaaatagtgtattataataatGCTGAAATAACAGAGGAACTTTTGAAAAATGAACTTTATCCAGACTTAACGCAGGAGGAGTTTCGCGCGATGCATGAAAAGATGAAAGGTCTTTTAAAGTCCATTGCCGCTGCAAACATGGACCAGGCCCAGCTGGAAGCCTTCCTGACTGCCCAGACCAGGAAGCAAGGCACGGGGAGTGTGAGCGCCGAGCAGGCGGCCGCCCTCTCCCGGTTCTGGAAGAGCCATCGGGCCCGGGTGAGGGAGAGCCTGCTGGGCCAGAGCCGCTGGGAGCCCGGCCTGAAGGGCCTCACCTGGAGAGTGGACCTCCAGACCTCAGCCAGCAGAGGGGGTGCCGCCAACATTCCCGTGGCCCTGGTGGAGCTGGAACTGGGCAGGGCTGGAAAGGACTCAGACTTTGTGTGTCTGGAGTTTGACGAGGCGAAGGTGAACCAAGTGTTGAAGAAGATGGCTGAGATCCAGGAGAGCATCAACACCATCGTACACCGCAGCTAGGatctaaatCTCCTTGAAACATTCTGACTGCCTGACCTGGTCTAGACTTTCAACACTGGGCACAGGCCAGGGGTGTAGGACATTGGGTGAGGTGAGACATTCACAACATTGCAAATAGAACGGACAAGATTTGCTATTCTACATGACAGGCAAGACTATCTGTTCTACGTACAACATATTCAGGGAGTTATTTTGCATGGTTGCACCATCCTGGACAGGCCTACGTGCTGTCCCAATTGGCCCAATGGCTTACATATCCTTATTTTTCTTGTCTCATTTATTTTGGGTTGATTTGAAAGACTTGATTTGTTGAAAAGTAAAAAATTATGGAAATGTATCTGGTCCTTCAAACTGTCAGTGATCATGAAAGAGAAAAAAAACCTAACATTTATTCATCCATAGTAATGTCATAAAGATTCATTTGTACAGTGAAGGATAGAGCTGGGACTATAAAACAATCAATACCGAACCAACCATTTTTATCTAGGACATTTGACTGATATTGACGATAAGTAGCCTTTACTAGAGGAATGTGTAGTTTGAAAAACTTAATTAAGTCTGCTAATATGCGTTATTTCTAACTGGATAATTGATAGCTGCAACATTCAAGGTAGTTTTAAGGGTAATACAAAAGAAGTAACTGGTGCACATTCATGTTATCGATTTATCGTTCAGTTGGTCGTTATTGTGATAATTCAGTCAATTtatggatttttgtccatatcgcccagctctaatGAAGGTTCATGTCATCTTGTTACCCCCATCTGCAGAATGGGATATCAACCCACCGTAACAGGCTACCAAGCTAAACACTTTGGACCAGGTATAATTGGAAAAAAATTAAACTAACAAAATGTA
>XM_021557281.2
GGCATACACATGACAGGAGTCACGTGACCCGTGGGGCTGAAACATGGCAGATGTCGAAACAACCAAATCTTTGAACGGTTTGCTGAATGGAATAGCAcaaatagtgtattataataatGCTGAAATAACAGAGGAACTTTTGAAAAATGAACTTTATCCAGACTTAACGCAGGAGGAGTTTCGCGCGATGCATGAAAAGATGAAAGGTCTTTTAAAGTCCATTGCCGCTGCAAACATGGACCAGGCCCAGCTGGAAGCCTTCCTGACTGCCCAGACCAGGAAGCAAGGCACGGGGAGTGTGAGCGCCGAGCAGGCGGCCGCCCTCTCCCGGTTCTGGAAGAGCCATCGGGCCCGGGTGAGGGAGAGCCTGCTGGGCCAGAGCCGCTGGGAGCCCGGCCTGAAGGGCCTCACCTGGAGAGTGGACCTCCAGACCTCAGCCAGCAGAGGGGGTGCCGCCAACATTCCCGTGGCCCTGGTGGAGCTGGAACTGGGCAGGGCTGGAAAGGACTCAGACTTTGTGTGTCTGGAGTTTGACGAGGCGAAGGTGAACCAAGTGTTGAAGAAGATGGCTGAGATCCAGGAGAGCATCAACACCATCGTACACCGCAGCTAGGatctaaatgtgtgtgtgagtgataaaGAGAGGAACGTCCCCATtctattttttgtattttcttgtcATTTCCCTTCATTCTATGACTTGGACAGAAAACATTAGCCTGCCACATCAGACAGGACAAATATGCCTTATGATGTATCTTTAAACTTGTATTTACTGTACACACTGGCTAGTTAATTTCTTAGTAAGTCCTATCTGTTTAATCTAACATTGGCCTTATTTTCTCCAAAGGGGATATTGTTCTATCACTGCTAGAGGAGAAAACAtgctgttttctttttttttgtgtccGGGAAGGAAGACTTCTTTTCACGTACAGAACCTACACTACTGTTATGCTTGATTTTACAATTAGTGCAATGTCCATTTTGTATGTACCCTTTGCCATTCCAGACAGTGACACGTTGATATTTTCAGTTTAAGCCTAGTAAACTTAACATCCCCTTGCTTAATGTTGGGCAGACAACTTGTACAATATCGTTGTTCCCAAATGAGCTGCTTCTTTCCACACTATTACTGTCACCATCATGAATTTCCTTCTGGGGGAAATGTGCTTCACAGCTCCTTGAAACATTCTGACTGCCTGACCTGGTCTAGACTTTCAACACTGGGCACAGGCCAGGGGTGTAGGACATTGGGTGAGGTGAGACATTCACAACATTGCAAATAGAACGGACAAGATTTGCTATTCTACATGACAGGCAAGACTATCTGTTCTACGTACAACATATTCAGGGAGTTATTTTGCATGGTTGCACCATCCTGGACAGGCCTACGTGCTGTCCCAATTGGCCCAATGGCTTACATATCCTTATTTTTCTTGTCTCATTTATTTTGGGTTGATTTGAAAGACTTGATTTGTTGAAAAGTAAAAAATTATGGAAATGTATCTGGTCCTTCAAACTGTCAGTGATCATGAAAGAGAAAAAAAACCTAACATTTATTCATCCATAGTAATGTCATAAAGATTCATTTGTACAGTGAAGGATAGAGCTGGGACTATAAAACAATCAATACCGAACCAACCATTTTTATCTAGGACATTTGACTGATATTGACGATAAGTAGCCTTTACTAGAGGAATGTGTAGTTTGAAAAACTTAATTAAGTCTGCTAATATGCGTTATTTCTAACTGGATAATTGATAGCTGCAACATTCAAGGTAGTTTTAAGGGTAATACAAAAGAAGTAACTGGTGCACATTCATGTTATCGATTTATCGTTCAGTTGGTCGTTATTGTGATAATTCAGTCAATTtatggatttttgtccatatcgcccagctctaatGAAGGTTCATGTCATCTTGTTACCCCCATCTGCAGAATGGGATATCAACCCACCGTAACAGGCTACCAAGCTAAACACTTTGGACCAGGTATAATTGGAAAAAAATTAAACTAACAAAATGTA

Function

NR:

description
COMM domain-containing protein 1-like

GO: NA

KEGG:

id description
K22557 COMMD1, MURR1; COMM domain containing 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557285.2 False 1475 mRNA 0.45 4 23878481 23890527
XM_021557281.2 True 2032 mRNA 0.43 3 23878482 23890527

Neighbor

gene id symbol gene type direction distance location
LOC110486004 LOC106585779 coding upstream 12786 23807835 ~ 23865695 (+)
LOC118938611 NA coding upstream 16893 23861456 ~ 23861588 (+)
LOC118938574 NA coding upstream 46964 23831384 ~ 23831517 (+)
LOC110485112 LOC100380723 coding upstream 71373 23791653 ~ 23807108 (+)
LOC110486007 LOC106585823 coding downstream 3518 23894045 ~ 23912203 (+)
LOC110485113 NA coding downstream 23792 23914319 ~ 23921658 (+)
LOC110486008 LOC106564858 coding downstream 94232 23984759 ~ 23990432 (+)
LOC110486012 LOC106585868 coding downstream 144685 24035212 ~ 24046678 (+)
LOC110486011 LOC106585850 coding downstream 159102 24049629 ~ 24066383 (+)
G1156025 NA non-coding upstream 10196 23868070 ~ 23868285 (+)
G1156000 NA non-coding upstream 103463 23774613 ~ 23775018 (+)
G1156004 NA non-coding upstream 103990 23774209 ~ 23774491 (+)
G1155958 NA non-coding upstream 167446 23710327 ~ 23711035 (+)
LOC110485993 LOC106585727 non-coding upstream 210316 23611825 ~ 23668173 (+)
G1156046 NA non-coding downstream 28944 23919471 ~ 23919674 (+)
G1156065 NA non-coding downstream 65723 23956250 ~ 23956539 (+)
G1156079 NA non-coding downstream 86507 23977034 ~ 23979017 (+)
G1156096 NA non-coding downstream 126098 24016625 ~ 24017093 (+)
G1156104 NA non-coding downstream 136148 24026675 ~ 24026898 (+)
LOC110485992 LOC106585723 other upstream 279478 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 306701 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 919130 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1268202 22606256 ~ 22610371 (+)
G1154412 mcoln1 other upstream 1366741 22511379 ~ 22511740 (+)
G1156089 NA other downstream 108119 23998646 ~ 24003968 (+)
G1156247 NA other downstream 436256 24326783 ~ 24328963 (+)
G1157117 NA other downstream 873575 24764102 ~ 24764346 (+)
G1157292 NA other downstream 1211013 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1522582 25410869 ~ 25419361 (+)

Expression


Co-expression Network