LOC110485113


Basic Information

Item Value
gene id LOC110485113
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23914319 ~ 23921658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939722.1
ATGACGTTTACAACCCTCCGGGCCTATAACTCTGACAACATTGGATTGTCCTCCACACTCTCTGTCCACCTCTTCTCAGATGACCACCGTGGTAATGAGGGCAATGCCTTGCTGCGGAGCTGCCACCAGGTGATGCGCAGCGAGTTCTTCTCCCCAGACTACTTGTGCTCCAACCTACCGTTCTGGTGTAACTGGACCATCCAGGTAGACCCTGGTAAACGTGTGCTCCTCCACCTAGAGGATTTCACCCAGTCAGACGCATGCAGCGGGAAGCTGGACCAGATCCACCTGGTCGAGCCACTGGGGGTCGCAGGGGGTCACAAGATCCTGAAGAAGTGTTGGCGTGAGGCCAAGTACAGGTCCCTCTCCAACATCCTCCATGTGGTTCAGCTGATCAGAGGCAAACCCAGTCCGCCCCACAGGGGTTTCTATGGGTGTTACGAGGCGTTCGTACCGCCAGTCACGTACAATGCTTATGATGATACCACGAAGAAGACAGGAAGGGGCCATTTTACTGCTCAGACCAACCCGGCGATGGTGTTTGACTATTTCGACCAACTCACTTCCTCCTCTGCGTCCAATGAGCTTCCGTCATGGGAAGCAGAGGAGCCAATGAGAAAGTCAGAAATCACACCGAAGTACCACACTTACCAGAAGGGATTTAGTTTCATATTGAATCACTCCATTACTCAACCTTACTTTTgcaccctgtgtgtgtctgtctcggatgtgaatgagtgtgtgaccCAGCTGGTGCTGTGTGACGTCAACGCAGAGTGTGTGAACCGCTTTGGTTCCTATGCATGCCCATGCCACTCCGGGTTCGAGGACATGTCTAGGCTGGGCTCAGGAGGAACCATTTGCGTGGACACCAAGGCCGCTGGTGTGGACCGCCACAATAAGTCTACGATTACGGTAGGTCAGCATAGTCCTGAGCAGCAGCACTGTAACACTGGCTGTACTTCGGAACAGTCCAGCGGGATGATCAAAGGCATCTACGTGGTGTGCTTCCTGTTCAGCTTCCTCATCCTGCTGCTCCTCTGTACTGTGGGCGTGCTGTACCATCGCCACCACTGGGGGGCCTTCCTGGTCCACTGTCGGCGCAGCAGCCTCGGGAGCATCCACCCTCCTGACTGCAAAAACCGTTCCAGCCGCACCAACTCGGAGTTGCCCCCACCCGTATGGCGCCCTAAGGATGGCTGGGCTCGCCCTAAGGACTGCTGCCCCTCGGTGGACCTGCCCTTGCTGCGCTTCAGCCCCCTGCTGCCTCTTGATGGGTACATGGAGCCAGGGGAGGGTGTCAAGCTTTGA

Function

NR:

description
uncharacterized protein LOC110485113

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939722.1 True 1311 mRNA 0.56 6 23914319 23921658

Neighbor

gene id symbol gene type direction distance location
LOC110486007 LOC106585823 coding upstream 2116 23894045 ~ 23912203 (+)
LOC110486005 comd1 coding upstream 23792 23878481 ~ 23890527 (+)
LOC110486004 LOC106585779 coding upstream 48624 23807835 ~ 23865695 (+)
LOC118938611 NA coding upstream 52731 23861456 ~ 23861588 (+)
LOC118938574 NA coding upstream 82802 23831384 ~ 23831517 (+)
LOC110486008 LOC106564858 coding downstream 63101 23984759 ~ 23990432 (+)
LOC110486012 LOC106585868 coding downstream 113554 24035212 ~ 24046678 (+)
LOC110486011 LOC106585850 coding downstream 127971 24049629 ~ 24066383 (+)
LOC110486014 LOC106585894 coding downstream 223554 24145212 ~ 24158953 (+)
actr2a LOC106585927 coding downstream 268395 24190053 ~ 24210340 (+)
G1156025 NA non-coding upstream 46034 23868070 ~ 23868285 (+)
G1156000 NA non-coding upstream 139301 23774613 ~ 23775018 (+)
G1156004 NA non-coding upstream 139828 23774209 ~ 23774491 (+)
G1155958 NA non-coding upstream 203284 23710327 ~ 23711035 (+)
LOC110485993 LOC106585727 non-coding upstream 246154 23611825 ~ 23668173 (+)
G1156065 NA non-coding downstream 34592 23956250 ~ 23956539 (+)
G1156079 NA non-coding downstream 55376 23977034 ~ 23979017 (+)
G1156096 NA non-coding downstream 94967 24016625 ~ 24017093 (+)
G1156104 NA non-coding downstream 105017 24026675 ~ 24026898 (+)
G1156107 NA non-coding downstream 109255 24030913 ~ 24031133 (+)
LOC110485992 LOC106585723 other upstream 315316 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 342539 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 954968 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1304040 22606256 ~ 22610371 (+)
G1154412 mcoln1 other upstream 1402579 22511379 ~ 22511740 (+)
G1156089 NA other downstream 76988 23998646 ~ 24003968 (+)
G1156247 NA other downstream 405125 24326783 ~ 24328963 (+)
G1157117 NA other downstream 842444 24764102 ~ 24764346 (+)
G1157292 NA other downstream 1179882 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1491451 25410869 ~ 25419361 (+)

Expression


Co-expression Network