LOC110486008 (LOC106564858)


Basic Information

Item Value
gene id LOC110486008
gene name LOC106564858
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 23984759 ~ 23990432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557292.2
GAAGGGCAGGGTAGGCAGAAGGTGATCAATCTCCATCCGTCAACATTGGCAATCACCTTACCACTGTGCAAGACGCACAAGACAATGCGATTGATTTGATTTTTATAATATTTTTTCCAATTGTGAAATTTACCTCTGACGCACCGCTGGGGTTCGGATCGGAAAAACAGCGTTGGTTGACGTAAACTCCTTATTTGCAGTTTGCgtatttctcctcctctcctacaaCCTTCTTACGGTTGTCTCGCTTTCAAGAACATTTTCTCCATGTGGATATTTTTGATGTACCGGATCTTCTTGATTTGACTACAAATAAAGCAAATAAGGAAACAGGATCCCAAACGCAAGgatttcatcaagggaCTGCAACGTCGGGGGAAACGAACATTTCCGCACGGACTTTGGTTTCCCCGTGTCCGTTTCTAGCATGATGTCATACCTCAAACAGGCCCCGTACGGCATGAACGGAATGGGGCTCAGCGGTACGGCCATGGACCTACTGCACCCATCAGTGGGGTATCCAGATCGAAATGGCTTCGAAGAGTTTCCATTGACAGGTTTCTATTCCATTTCAGCGCATCCGAGGAAACAGCGGAGAGAGAGGACAACTTTTACTCGCACTCAGCTGGACATTCTGGAGTCCCTTTTCGGCAAGACGCGCTACCCAGACATTTTCATGCGGGAAGAAGTCGCACTGAAAATCAATTTGCCTGAGTCTAGAGTCCAGGTATGGTTCAAGAACAGGAGAGCCAAGTGCCGTCAGCAGGCCCAGAGTGGAAACAATGCTAAAGTCCGGCCGGCCAAGAAGAAGTCCTCTCCAACCAGGGAGAGCACAGGCTCAGAGAGCAGTGGTCAGTTCACCCCTCCGGTAGTGACCAGCACcggctcctcttcctcttcctctgcctcgTCCGGTGGCTCTCATCCCTCCGGCCATGGAGGCCAAGGCCTGAGCAGCACTTCTACCTCCGTCACCGCCCCAGTGTCCTCCATCTGGAGCCCTGCGCCCATCTCCCCGGCCCCCGCACCACCCCCTGTCCCCGACCCCACTCCCCCCACCAGTGCCTCCTGCATGCAGAGGTCTGTGTCAGGTACTGGAGGCACGTCCTCCTACCCGGTGTCCTACAGCCAGACAGCAGCGGCCTATGGGCAGGGCTACCCCGCCCCAGCGTCAACGGGCTCCTACTTCGGAGGGGTGGAATGCAGCTCGTACCTGGCCCCTATGCACtctcaccaccacccccaccatccGCACCAGCTCAGCCCCATGACGGGCTCCTCTATGTCTGGCCATCCACACCACCACATAGGGCAGACCTCAGggcaccaccaccatcaccacccccaccaccaccaggcctaCAGCGGGGCCGGCCTGGCCTTCAACTCCTCAGACTGTCTGGATTACAAAGAACAAACGGCCGCGGCCGCAGCCTCTTCATGGAAACTCAACTTCAACACCACCGACTGCTTGGACTACAAAGACCAGGCTTCCTCCTGGCGTTTCCAAGTCTtgtgacttttttttttactcctttcaaataagtatttttgtttcgtttttttttgttgaagaGCTTTTTTCTTCAAAGCATTAAGAAGTTAACTAATAGTAGAGACAATTATCAAGCCTTTTTTAAGTTAATGTTTGGAAAAATCAAGTAACTCACAGATGAAAAAGCCTGTAAGGGTGGCATCTTCTTTGACCATTTCATGAATCAACTTTAGAACACGCTTGAATTGGACCCCCTCACCCGTACTTTGGAACATCAAGGAATATTTTTCTACACGTGAACTCTGAAAATTGCCCTCCAACAAGTTCAAAGTATGTAGTTTATCCCTTTGAATTAGAATTGTTTTTTTCAGGATGGAGCAAGAGCTCTGTGTTATGGATTTTCCATAAATATTCCCAAGAACGACCAATTGAGGGCAAACCTTTTGTCACAAAATGTGTTTTATGGAAAAATATGATATTTTATGCTCATGTATTTGATATAGGCCTACCCATTAGAGACCATTTACATTGAGAAATTAAGATGCTGCTATTGTTTTCAGTTTGCTGATATTCAAATTTATGTTAATTCCAACTTGAATATTGTTCATTGTCCGGACTGTAGTGTTGTATTTTGGAAGTTTATTTGCAGCACTTGTTTATAAGGTAAACTATTTTGCTATTGTTCTTTACGAAGAAAATGTGAATTAGACACGCAATGTCAGTATTccaatgaaataaaaaatgtacattcGTGTCTTTATAATAAAGATTCGTTAAAAACATG
>XM_021557293.2
AGGGCAGGGTAGGCAGAAGGTGATCAATCTCCATCCGTCAACATTGGCAATCACCTTACCACTGTGCAAGACGCACAAGACAATGCGATTGATTTGATTTTTATAATATTTTTTCCAATTGTGAAATTTACCTCTGACGCACCGCTGGGGTTCGGATCGGAAAAACAGCGTTGGTTGACGTAAACTCCTTATTTGCAGTTTGCgtatttctcctcctctcctacaaCCTTCTTACGGTTGTCTCGCTTTCAAGAACATTTTCTCCATGTGGATATTTTTGATGTACCGGATCTTCTTGATTTGACTACAAATAAAGCAAATAAGGAAACAGGATCCCAAACGCAAGgatttcatcaagggaCTGCAACGTCGGGGGAAACGAACATTTCCGCACGGACTTTGGTTTCCCCGTGTCCGTTTCTAGCATGATGTCATACCTCAAACAGGCCCCGTACGGCATGAACGGAATGGGGCTCAGCGGTACGGCCATGGACCTACTGCACCCATCAGTGGGGTATCCAGCGCATCCGAGGAAACAGCGGAGAGAGAGGACAACTTTTACTCGCACTCAGCTGGACATTCTGGAGTCCCTTTTCGGCAAGACGCGCTACCCAGACATTTTCATGCGGGAAGAAGTCGCACTGAAAATCAATTTGCCTGAGTCTAGAGTCCAGGTATGGTTCAAGAACAGGAGAGCCAAGTGCCGTCAGCAGGCCCAGAGTGGAAACAATGCTAAAGTCCGGCCGGCCAAGAAGAAGTCCTCTCCAACCAGGGAGAGCACAGGCTCAGAGAGCAGTGGTCAGTTCACCCCTCCGGTAGTGACCAGCACcggctcctcttcctcttcctctgcctcgTCCGGTGGCTCTCATCCCTCCGGCCATGGAGGCCAAGGCCTGAGCAGCACTTCTACCTCCGTCACCGCCCCAGTGTCCTCCATCTGGAGCCCTGCGCCCATCTCCCCGGCCCCCGCACCACCCCCTGTCCCCGACCCCACTCCCCCCACCAGTGCCTCCTGCATGCAGAGGTCTGTGTCAGGTACTGGAGGCACGTCCTCCTACCCGGTGTCCTACAGCCAGACAGCAGCGGCCTATGGGCAGGGCTACCCCGCCCCAGCGTCAACGGGCTCCTACTTCGGAGGGGTGGAATGCAGCTCGTACCTGGCCCCTATGCACtctcaccaccacccccaccatccGCACCAGCTCAGCCCCATGACGGGCTCCTCTATGTCTGGCCATCCACACCACCACATAGGGCAGACCTCAGggcaccaccaccatcaccacccccaccaccaccaggcctaCAGCGGGGCCGGCCTGGCCTTCAACTCCTCAGACTGTCTGGATTACAAAGAACAAACGGCCGCGGCCGCAGCCTCTTCATGGAAACTCAACTTCAACACCACCGACTGCTTGGACTACAAAGACCAGGCTTCCTCCTGGCGTTTCCAAGTCTtgtgacttttttttttactcctttcaaataagtatttttgtttcgtttttttttgttgaagaGCTTTTTTCTTCAAAGCATTAAGAAGTTAACTAATAGTAGAGACAATTATCAAGCCTTTTTTAAGTTAATGTTTGGAAAAATCAAGTAACTCACAGATGAAAAAGCCTGTAAGGGTGGCATCTTCTTTGACCATTTCATGAATCAACTTTAGAACACGCTTGAATTGGACCCCCTCACCCGTACTTTGGAACATCAAGGAATATTTTTCTACACGTGAACTCTGAAAATTGCCCTCCAACAAGTTCAAAGTATGTAGTTTATCCCTTTGAATTAGAATTGTTTTTTTCAGGATGGAGCAAGAGCTCTGTGTTATGGATTTTCCATAAATATTCCCAAGAACGACCAATTGAGGGCAAACCTTTTGTCACAAAATGTGTTTTATGGAAAAATATGATATTTTATGCTCATGTATTTGATATAGGCCTACCCATTAGAGACCATTTACATTGAGAAATTAAGATGCTGCTATTGTTTTCAGTTTGCTGATATTCAAATTTATGTTAATTCCAACTTGAATATTGTTCATTGTCCGGACTGTAGTGTTGTATTTTGGAAGTTTATTTGCAGCACTTGTTTATAAGGTAAACTATTTTGCTATTGTTCTTTACGAAGAAAATGTGAATTAGACACGCAATGTCAGTATTccaatgaaataaaaaatgtacattcGTGTCTTTATAATAAAGATTCGTTAAAAACATG
>XM_036940664.1
atataaaataatctaATATTAAAAACAAGAAATTTGTCTGCTGAAAGAGAATGTTCCATTAAAGGCAATCCTGTGGAACACACTCCAGAAGATCTGGATATTATATAGGCCTAGAATATGTATTTGTAAAATATAATGTCATGCAATATTTTGACAAACAGCCGACTCCATTTTCGTTTCAACATTAAACTTTGGTCCATTTGTTATTTTACGCAGGGCCTGttatagcctataggcctagacAAACTACGTATGAAATAGTCTAATAAATTGGGCTGATTTTGCCATAACATGGCCTACATTAACAGTGAAATGGATTATACGGCTGTTTATGTGAAGCTTGTGCGTGTACTTGTATTTTATGCAGGCTGTTATGACACTTTACATATTTGTGTGCCCAATTATCTGGATCCAAATGCATGCTTTATTTTATTGATCAAAGTCATTAATCTTATCTTGCAGGCCTCTCCATGCACCGAAAATGTGCGTAATGGGGAATGTACTGTTTTTAACGGTGGATGCATTGATCAAAACAAGGACAAGAGGTTGCCCATAAGAAGTCATGCGTCAAAAGGAATTAATACACGACTGGCGACAGATTTCATCCGTAATTATTTCTTTACTGTAGTGATGGATGACTGCAACCTGAGTTTATAATTGGATATCGTTTAGCCACGTTAACGCGTCATGTCATACTTTGTTGGAAACCTTTGTAAACGGCTAATCTTTGGATTTTTGGAGAGGGAATCGGCTTTTTGATTCACTTTTTTTGATACGACTCGCGTAAAAGTTGGAAGTCTCAATCAAAAAGTCCTATAGGCAACTCGAATATAGCAACGTTTTGAAATTGGAAATATAAATTGGCTTTGATATTGTTTCAGTCTATTTCCAATTGAATTAACCATAATTTAAATATAAGGCCATTTCAATTATTATAATCAAATGTAGTTTGCTGAATTGCTCTTTGTAGGCTACTAAATATAAATAAGTAACcaacataaatatatattttcacattCTACTCACAATGAGTTTTCCAttgcaggatttcatcaagggaCTGCAACGTCGGGGGAAACGAACATTTCCGCACGGACTTTGGTTTCCCCGTGTCCGTTTCTAGCATGATGTCATACCTCAAACAGGCCCCGTACGGCATGAACGGAATGGGGCTCAGCGGTACGGCCATGGACCTACTGCACCCATCAGTGGGGTATCCAGATCGAAATGGCTTCGAAGAGTTTCCATTGACAGGTTTCTATTCCATTTCAGCGCATCCGAGGAAACAGCGGAGAGAGAGGACAACTTTTACTCGCACTCAGCTGGACATTCTGGAGTCCCTTTTCGGCAAGACGCGCTACCCAGACATTTTCATGCGGGAAGAAGTCGCACTGAAAATCAATTTGCCTGAGTCTAGAGTCCAGGTATGGTTCAAGAACAGGAGAGCCAAGTGCCGTCAGCAGGCCCAGAGTGGAAACAATGCTAAAGTCCGGCCGGCCAAGAAGAAGTCCTCTCCAACCAGGGAGAGCACAGGCTCAGAGAGCAGTGGTCAGTTCACCCCTCCGGTAGTGACCAGCACcggctcctcttcctcttcctctgcctcgTCCGGTGGCTCTCATCCCTCCGGCCATGGAGGCCAAGGCCTGAGCAGCACTTCTACCTCCGTCACCGCCCCAGTGTCCTCCATCTGGAGCCCTGCGCCCATCTCCCCGGCCCCCGCACCACCCCCTGTCCCCGACCCCACTCCCCCCACCAGTGCCTCCTGCATGCAGAGGTCTGTGTCAGGTACTGGAGGCACGTCCTCCTACCCGGTGTCCTACAGCCAGACAGCAGCGGCCTATGGGCAGGGCTACCCCGCCCCAGCGTCAACGGGCTCCTACTTCGGAGGGGTGGAATGCAGCTCGTACCTGGCCCCTATGCACtctcaccaccacccccaccatccGCACCAGCTCAGCCCCATGACGGGCTCCTCTATGTCTGGCCATCCACACCACCACATAGGGCAGACCTCAGggcaccaccaccatcaccacccccaccaccaccaggcctaCAGCGGGGCCGGCCTGGCCTTCAACTCCTCAGACTGTCTGGATTACAAAGAACAAACGGCCGCGGCCGCAGCCTCTTCATGGAAACTCAACTTCAACACCACCGACTGCTTGGACTACAAAGACCAGGCTTCCTCCTGGCGTTTCCAAGTCTtgtgacttttttttttactcctttcaaataagtatttttgtttcgtttttttttgttgaagaGCTTTTTTCTTCAAAGCATTAAGAAGTTAACTAATAGTAGAGACAATTATCAAGCCTTTTTTAAGTTAATGTTTGGAAAAATCAAGTAACTCACAGATGAAAAAGCCTGTAAGGGTGGCATCTTCTTTGACCATTTCATGAATCAACTTTAGAACACGCTTGAATTGGACCCCCTCACCCGTACTTTGGAACATCAAGGAATATTTTTCTACACGTGAACTCTGAAAATTGCCCTCCAACAAGTTCAAAGTATGTAGTTTATCCCTTTGAATTAGAATTGTTTTTTTCAGGATGGAGCAAGAGCTCTGTGTTATGGATTTTCCATAAATATTCCCAAGAACGACCAATTGAGGGCAAACCTTTTGTCACAAAATGTGTTTTATGGAAAAATATGATATTTTATGCTCATGTATTTGATATAGGCCTACCCATTAGAGACCATTTACATTGAGAAATTAAGATGCTGCTATTGTTTTCAGTTTGCTGATATTCAAATTTATGTTAATTCCAACTTGAATATTGTTCATTGTCCGGACTGTAGTGTTGTATTTTGGAAGTTTATTTGCAGCACTTGTTTATAAGGTAAACTATTTTGCTATTGTTCTTTACGAAGAAAATGTGAATTAGACACGCAATGTCAGTATTccaatgaaataaaaaatgtacattcGTGTCTTTATAATAAAGATTCGTTAAAAACATG

Function

NR:

description
homeobox protein OTX1 B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557292.2 False 2279 mRNA 0.47 4 23984759 23990432
XM_021557293.2 False 2226 mRNA 0.48 4 23984761 23990432
XM_036940664.1 True 2976 mRNA 0.43 3 23986069 23990432

Neighbor

gene id symbol gene type direction distance location
LOC110485113 NA coding upstream 63101 23914319 ~ 23921658 (+)
LOC110486007 LOC106585823 coding upstream 72556 23894045 ~ 23912203 (+)
LOC110486005 comd1 coding upstream 94232 23878481 ~ 23890527 (+)
LOC110486004 LOC106585779 coding upstream 119064 23807835 ~ 23865695 (+)
LOC110486012 LOC106585868 coding downstream 44780 24035212 ~ 24046678 (+)
LOC110486011 LOC106585850 coding downstream 59197 24049629 ~ 24066383 (+)
LOC110486014 LOC106585894 coding downstream 154780 24145212 ~ 24158953 (+)
actr2a LOC106585927 coding downstream 199621 24190053 ~ 24210340 (+)
LOC110486019 LOC106585964 coding downstream 271515 24261947 ~ 24300246 (+)
G1156079 NA non-coding upstream 5742 23977034 ~ 23979017 (+)
G1156065 NA non-coding upstream 28220 23956250 ~ 23956539 (+)
G1156046 NA non-coding upstream 65085 23919471 ~ 23919674 (+)
G1156025 NA non-coding upstream 116474 23868070 ~ 23868285 (+)
G1156000 NA non-coding upstream 209741 23774613 ~ 23775018 (+)
G1156096 NA non-coding downstream 26193 24016625 ~ 24017093 (+)
G1156104 NA non-coding downstream 36243 24026675 ~ 24026898 (+)
G1156107 NA non-coding downstream 40481 24030913 ~ 24031133 (+)
G1156109 NA non-coding downstream 42954 24033386 ~ 24033591 (+)
G1156126 NA non-coding downstream 92256 24082688 ~ 24084733 (+)
LOC110485992 LOC106585723 other upstream 385756 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 412979 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1025408 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1374480 22606256 ~ 22610371 (+)
G1154412 mcoln1 other upstream 1473019 22511379 ~ 22511740 (+)
G1156089 NA other downstream 8214 23998646 ~ 24003968 (+)
G1156247 NA other downstream 336351 24326783 ~ 24328963 (+)
G1157117 NA other downstream 773670 24764102 ~ 24764346 (+)
G1157292 NA other downstream 1111108 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1422677 25410869 ~ 25419361 (+)

Expression


Co-expression Network