LOC110486011 (LOC106585850)


Basic Information

Item Value
gene id LOC110486011
gene name LOC106585850
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24049629 ~ 24066383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940669.1
CATTTGGCTTCGCGTGGTGCAAGAAACCTGTCCAAAATAAATATACTCCTCAGGACCGTGACAATGTACATTTTAAAGTGTTAATTTTTCACAGGCCGAAACCCAGCTCGCTAAAGTAGCCAAGCACCTTGGAGTTCTTTGGTGGATTGATATCAAAATCATTATCATCAGATATCAGCAAAGCCGGGATGGCAGAGTTTCAGGAGAAGCTGCGACTGCAGCATGAGGCCTCCATGCACAAAGAGCTGGAGAAGCTGCTGACCACAGCCAAGGGGGCTGAGCAGGAGATTTCCAAAAAGGACTTTGAGGGTTTTAAGAACCTCTTCCACAGATTCCTCCAGGTAAAAGGACCCTCTGTGAAATGGGACAAGATCCACAAGCCCCCAGAGGATCTGATCCACCCCTATGACAAGATCAAGGCCCAGGCGCTGCCGGACAGCGTGGCGGCCAGCCTCAACAAGCTGGTGGTGGTCAAGCTCAACGGAGGCCTGGGCACCAGCATGGGCTGCAAAGGCCCCAAGAGTGTCATCAGTGTCCGCAATGAGAATACCTTCCTGGACCTCACCGTCCATCAGATAGAGCACTTAAACAAGACATTCAACGTGGATGTGCCTCTTGTTCTCATGAACTCCTTCAACACAGACGAGGACACCAAGAAAATCCTGCAGAAGTACACACACCACCGGGTGCACATCCACACTTTCAACCAGAGCAgATACCCGAGGATCAACAAGGAGTCCCTGCTGCCCGTGGCAAAGGACCTGGGAATGCACGGCGACCACGCCGACGCCTGGTACCCGCCCGGCCACGGAGACATCTACGCCAGTTTCTACAACTCCGGCCTGCTGGACCAGCTGATCGCCGCGGGCAAGGAGTACATCTTCGTGTCCAACATAGACAACCTGGGGGCCACCGTGGACCTGTTCATCCTCAACCACCTGATGACGCAGCCCAAAGACAAGCGCTGCGAGTTCATCATGGAGGTGACGGACAAGACCCGTGCAGACGTCAAGGGTGGCACGCTGATCCAGTACGACGACAAGCTGCGTCTGCTGGAGATTGCCCAGGTGCCCAAAGCCCACGTGGACGAGTTCAAATCCGTCACCAAGTTCAAGATCTTCAATACCAACAACCTTTGGATCTCACTGGCCGCCATTAAGAGGCTGCATGAGCAGAACACCATGGACATGGAGATCATCGTCAACCCCAAGACGCTGGACGGTGGTCTGAACGTGATCCAGCTGGAAACAGCGGTGGGCGCCGCTATCAAGGCCTTCGACAACGCCCTGGGCGTCAACGTGCCCCGTAGCCGCTTCCTGCCCGTCAAGACCTCGTCGGACCTGCTGCTGGTCATGTCCAACCTCTACAGCCTGGACGCCGGCTCGCTCACCATGAGCAAGAAGAGGGAGTTCCCCTCCACGCCACACGTCAAGCTGGGCAGCTCTTTCACCAAGGTGCATGACTTTCTGATGAGGTTTGAGAGCATCCCAGACATGCTAGAACTGGATCACCTCACAGTGTCGGGAGACGTCACCTTCGGAAAGAACGTCTCTCTCAAGGGAACTGTCATCATTATTGCCAATCACGGAGATAGGATTGATATTCCTGCCGGAGCAGTGCTGGAAAACAAGATTGTATCTGGCAACCTGCGCATCCTCGACCACTAAGGCCTTCAGGACAAGACAGTTGCACAGACGAGACTCAAGGACAAACTACACCTAGGACTGTTTTAGAGCAAGGTTTCACTGTGATCCACCATTTCAGATAATTTATCTGCAGCTTACAAAGAAAGACTTGACCACAGTCAGGGTCATTTTAATCAGTTTTAAATGGGTGGGATGGTCCTCCTAATGAGCGTTGTGGTTCAGCACACAAGGCTtctaaggctgtgtttacacaagcagcccaattctgacaAAAGAGCTGAGCTAATTGGTGACAAGGCATATTAGTGGAAAAAGATCAGAATCGGgctggctgcctgtgtaaacagccTCTGTTGCCAACTCTGACCTGAATAAAGTGTAAAATGGA
>XM_021557300.2
ggaaacccaAAAGAGGTGGGCGAACTGAGAATGGGTGGTGTCGGGTTTACTGATGGATTGATACATTGTTTCTTGGGACTGCAGTTCATTTTCTCAAGCGCGAGTGGCTGTCTCTGGTGTCAAGCCATTGATGTTTATCTTTTATTGAACGATGTCTAATATTTGCTCGAAGACTATAGGCTAGGCTTTTGGAATCTTTTTTGGAGAAATTTTCTTGGCACATATTTTGTCATACGTCCAAAGATGTCTGTTTTGGATGATATCAGCAAAGCCGGGATGGCAGAGTTTCAGGAGAAGCTGCGACTGCAGCATGAGGCCTCCATGCACAAAGAGCTGGAGAAGCTGCTGACCACAGCCAAGGGGGCTGAGCAGGAGATTTCCAAAAAGGACTTTGAGGGTTTTAAGAACCTCTTCCACAGATTCCTCCAGGTAAAAGGACCCTCTGTGAAATGGGACAAGATCCACAAGCCCCCAGAGGATCTGATCCACCCCTATGACAAGATCAAGGCCCAGGCGCTGCCGGACAGCGTGGCGGCCAGCCTCAACAAGCTGGTGGTGGTCAAGCTCAACGGAGGCCTGGGCACCAGCATGGGCTGCAAAGGCCCCAAGAGTGTCATCAGTGTCCGCAATGAGAATACCTTCCTGGACCTCACCGTCCATCAGATAGAGCACTTAAACAAGACATTCAACGTGGATGTGCCTCTTGTTCTCATGAACTCCTTCAACACAGACGAGGACACCAAGAAAATCCTGCAGAAGTACACACACCACCGGGTGCACATCCACACTTTCAACCAGAGCAgATACCCGAGGATCAACAAGGAGTCCCTGCTGCCCGTGGCAAAGGACCTGGGAATGCACGGCGACCACGCCGACGCCTGGTACCCGCCCGGCCACGGAGACATCTACGCCAGTTTCTACAACTCCGGCCTGCTGGACCAGCTGATCGCCGCGGGCAAGGAGTACATCTTCGTGTCCAACATAGACAACCTGGGGGCCACCGTGGACCTGTTCATCCTCAACCACCTGATGACGCAGCCCAAAGACAAGCGCTGCGAGTTCATCATGGAGGTGACGGACAAGACCCGTGCAGACGTCAAGGGTGGCACGCTGATCCAGTACGACGACAAGCTGCGTCTGCTGGAGATTGCCCAGGTGCCCAAAGCCCACGTGGACGAGTTCAAATCCGTCACCAAGTTCAAGATCTTCAATACCAACAACCTTTGGATCTCACTGGCCGCCATTAAGAGGCTGCATGAGCAGAACACCATGGACATGGAGATCATCGTCAACCCCAAGACGCTGGACGGTGGTCTGAACGTGATCCAGCTGGAAACAGCGGTGGGCGCCGCTATCAAGGCCTTCGACAACGCCCTGGGCGTCAACGTGCCCCGTAGCCGCTTCCTGCCCGTCAAGACCTCGTCGGACCTGCTGCTGGTCATGTCCAACCTCTACAGCCTGGACGCCGGCTCGCTCACCATGAGCAAGAAGAGGGAGTTCCCCTCCACGCCACACGTCAAGCTGGGCAGCTCTTTCACCAAGGTGCATGACTTTCTGATGAGGTTTGAGAGCATCCCAGACATGCTAGAACTGGATCACCTCACAGTGTCGGGAGACGTCACCTTCGGAAAGAACGTCTCTCTCAAGGGAACTGTCATCATTATTGCCAATCACGGAGATAGGATTGATATTCCTGCCGGAGCAGTGCTGGAAAACAAGATTGTATCTGGCAACCTGCGCATCCTCGACCACTAAGGCCTTCAGGACAAGACAGTTGCACAGACGAGACTCAAGGACAAACTACACCTAGGACTGTTTTAGAGCAAGGTTTCACTGTGATCCACCATTTCAGATAATTTATCTGCAGCTTACAAAGAAAGACTTGACCACAGTCAGGGTCATTTTAATCAGTTTTAAATGGGTGGGATGGTCCTCCTAATGAGCGTTGTGGTTCAGCACACAAGGCTtctaaggctgtgtttacacaagcagcccaattctgacaAAAGAGCTGAGCTAATTGGTGACAAGGCATATTAGTGGAAAAAGATCAGAATCGGgctggctgcctgtgtaaacagccTCTGTTGCCAACTCTGACCTGAATAAAGTGTAAAATGGA
>XM_036940670.1
actgtggtactatattccagtacaagcacacctgattcaaatgtTTTACTAATCATCAGACTTGAAGCCGACTGGAGGTGTGGCGCAAGGAACTCTTCTGTGCCCTCATCTTCCTTTCAGTCATAAACAGCGCAGCCCGGGATGTCAAAAATTTCCAAAAAGGACTTTGAGGGTTTTAAGAACCTCTTCCACAGATTCCTCCAGGTAAAAGGACCCTCTGTGAAATGGGACAAGATCCACAAGCCCCCAGAGGATCTGATCCACCCCTATGACAAGATCAAGGCCCAGGCGCTGCCGGACAGCGTGGCGGCCAGCCTCAACAAGCTGGTGGTGGTCAAGCTCAACGGAGGCCTGGGCACCAGCATGGGCTGCAAAGGCCCCAAGAGTGTCATCAGTGTCCGCAATGAGAATACCTTCCTGGACCTCACCGTCCATCAGATAGAGCACTTAAACAAGACATTCAACGTGGATGTGCCTCTTGTTCTCATGAACTCCTTCAACACAGACGAGGACACCAAGAAAATCCTGCAGAAGTACACACACCACCGGGTGCACATCCACACTTTCAACCAGAGCAgATACCCGAGGATCAACAAGGAGTCCCTGCTGCCCGTGGCAAAGGACCTGGGAATGCACGGCGACCACGCCGACGCCTGGTACCCGCCCGGCCACGGAGACATCTACGCCAGTTTCTACAACTCCGGCCTGCTGGACCAGCTGATCGCCGCGGGCAAGGAGTACATCTTCGTGTCCAACATAGACAACCTGGGGGCCACCGTGGACCTGTTCATCCTCAACCACCTGATGACGCAGCCCAAAGACAAGCGCTGCGAGTTCATCATGGAGGTGACGGACAAGACCCGTGCAGACGTCAAGGGTGGCACGCTGATCCAGTACGACGACAAGCTGCGTCTGCTGGAGATTGCCCAGGTGCCCAAAGCCCACGTGGACGAGTTCAAATCCGTCACCAAGTTCAAGATCTTCAATACCAACAACCTTTGGATCTCACTGGCCGCCATTAAGAGGCTGCATGAGCAGAACACCATGGACATGGAGATCATCGTCAACCCCAAGACGCTGGACGGTGGTCTGAACGTGATCCAGCTGGAAACAGCGGTGGGCGCCGCTATCAAGGCCTTCGACAACGCCCTGGGCGTCAACGTGCCCCGTAGCCGCTTCCTGCCCGTCAAGACCTCGTCGGACCTGCTGCTGGTCATGTCCAACCTCTACAGCCTGGACGCCGGCTCGCTCACCATGAGCAAGAAGAGGGAGTTCCCCTCCACGCCACACGTCAAGCTGGGCAGCTCTTTCACCAAGGTGCATGACTTTCTGATGAGGTTTGAGAGCATCCCAGACATGCTAGAACTGGATCACCTCACAGTGTCGGGAGACGTCACCTTCGGAAAGAACGTCTCTCTCAAGGGAACTGTCATCATTATTGCCAATCACGGAGATAGGATTGATATTCCTGCCGGAGCAGTGCTGGAAAACAAGATTGTATCTGGCAACCTGCGCATCCTCGACCACTAAGGCCTTCAGGACAAGACAGTTGCACAGACGAGACTCAAGGACAAACTACACCTAGGACTGTTTTAGAGCAAGGTTTCACTGTGATCCACCATTTCAGATAATTTATCTGCAGCTTACAAAGAAAGACTTGACCACAGTCAGGGTCATTTTAATCAGTTTTAAATGGGTGGGATGGTCCTCCTAATGAGCGTTGTGGTTCAGCACACAAGGCTtctaaggctgtgtttacacaagcagcccaattctgacaAAAGAGCTGAGCTAATTGGTGACAAGGCATATTAGTGGAAAAAGATCAGAATCGGgctggctgcctgtgtaaacagccTCTGTTGCCAACTCTGACCTGAATAAAGTGTAAAATGGA

Function

NR:

description
UTP--glucose-1-phosphate uridylyltransferase-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00963 UGP2, galU, galF; UTP--glucose-1-phosphate uridylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940669.1 False 2034 mRNA 0.53 10 24049629 24066383
XM_021557300.2 False 2122 mRNA 0.52 10 24050837 24066383
XM_036940670.1 True 1897 mRNA 0.53 9 24053881 24066383

Neighbor

gene id symbol gene type direction distance location
LOC110486012 LOC106585868 coding upstream 2951 24035212 ~ 24046678 (+)
LOC110486008 LOC106564858 coding upstream 59197 23984759 ~ 23990432 (+)
LOC110485113 NA coding upstream 127971 23914319 ~ 23921658 (+)
LOC110486007 LOC106585823 coding upstream 137426 23894045 ~ 23912203 (+)
LOC110486005 comd1 coding upstream 159102 23878481 ~ 23890527 (+)
LOC110486014 LOC106585894 coding downstream 78829 24145212 ~ 24158953 (+)
actr2a LOC106585927 coding downstream 123670 24190053 ~ 24210340 (+)
LOC110486019 LOC106585964 coding downstream 195564 24261947 ~ 24300246 (+)
LOC110486021 LOC106585998 coding downstream 250665 24317048 ~ 24321237 (+)
LOC118938548 NA coding downstream 305241 24371624 ~ 24373364 (+)
G1156109 NA non-coding upstream 16038 24033386 ~ 24033591 (+)
G1156107 NA non-coding upstream 18496 24030913 ~ 24031133 (+)
G1156104 NA non-coding upstream 22731 24026675 ~ 24026898 (+)
G1156096 NA non-coding upstream 32536 24016625 ~ 24017093 (+)
G1156079 NA non-coding upstream 70612 23977034 ~ 23979017 (+)
G1156126 NA non-coding downstream 16305 24082688 ~ 24084733 (+)
G1156139 NA non-coding downstream 29709 24096092 ~ 24097844 (+)
G1156214 NA non-coding downstream 144727 24211110 ~ 24211418 (+)
G1156216 NA non-coding downstream 147116 24213499 ~ 24213708 (+)
G1156219 NA non-coding downstream 151680 24218063 ~ 24218297 (+)
G1156089 NA other upstream 45661 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 450626 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 477849 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1090278 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1439350 22606256 ~ 22610371 (+)
G1156247 NA other downstream 260400 24326783 ~ 24328963 (+)
G1157117 NA other downstream 697719 24764102 ~ 24764346 (+)
G1157292 NA other downstream 1035157 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1346726 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 1396544 25462927 ~ 25463458 (+)

Expression


Co-expression Network