LOC110486013 (LOC106585880)


Basic Information

Item Value
gene id LOC110486013
gene name LOC106585880
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24086694 ~ 24134220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557303.2
GCAGACTGGAGCAGAGACCCGATTGTAGAGATTACTCACTCTAGTATTGTCCTACACTGAGTCCGTTTACCAGTACATTAGAGCGAAAATAGTTGGACAGCATATAACAACGTCATAAACACATCTTAGCAGGTGAATGTAAAAAAATAACTCGACAATTCGGTGTTTAGGTCAGCACGGACAGATTTGCTTTCCTTTCAATCTTCGGTGTGCGTTTTTCTCAGCTGGAGCATTCAAATTGGATTTCGAGCGAATATCGGGAAAGTCCAGATGATGCTGTCGGATTGTCATTAGGTTGAGTGTGGCGTTGTGAGCGACAGGATGACCAGTCTCTGAGGAAAAAGGAGCAGACTGAGGAAAAAGGAGACAGAGGAGTGAGTGCTCACCGTGGGAGAGCTCTtcatcactccccccccccccccccccccccctgacagcTGCACCAATGTTCTCTCCCGACCAGGAAAACATCTCCACCACCCCAGCCTCCACCAAAGTGCCAGTCAAATACGGAGAGCTCATTGTTCTGGGGTACAATGGCTCCCTACCCAACGGAGACAGGGGGAGGCGGAAAAGCCGCTTTGCACTGTGCCGGAGACCCAAGGCCAGCGGGGTGAAACCCAGCACAGTGCACGTGGCGTGTACACCTCAGGCAGCCAAGGCCATCAGCAACAAGGACCAGCACAGTATCTCCTACACTCTGTCCCGGGCCCAGACGGTGGTGGTGGAGTACACTCATGACGGCAATACAGACATGTTCCAGATTGGGCGTTCCACAGAGAGCCCCATAGACTTTGTGGTGACGGACACGGTGCCTGGCAGTCAGCAGAGCCACGGGGGGGAGggccagacccagacccagtctaTCCAGAGCACCATCTCGCGCTTCGCCTGCCGCATCATCTGCCAGCGGAGCCCGCCGTACACCGCTCACATCTACGCCGCCGGCTTCGACTCCTCCAAGAACATCTTCCTGGGGGAGAAGGCAGCCAAGTGGAGGACACAGGAAGGACAGATGGACGGGCTGACCACTAATGGCGTGCTGGTGATGCACCCTCGCCACGGCTTCACGCAAGACTCCAAGCCGGGCGTGTGGAGAGAGATCTCTGTCTGTGGCAACGTCTTCACCCTCAGAGAGACCCGCTCCGCCCAGCAGCGGGGCAAGATGGTGGAGAGCGAGAGCCAGGAACTGGTGGATGGCTCGCTGATCGACCTGTGCGGCGCCACTCTCCTGTGGCGCACGGCCGAGGGCCTCTCGCGcactcccaccgtgaagcacctGGAGGCCCTGAGGCAGGAGCTGAATGCCGGGCGGCCCCAGTGCCCCGTGGGTTTCAACACCCTGGCCTTCCCCAGCCTCCGCCGCAAGGAGATCCTGGATGAGAAACAGCCCTGGGCCTACCTCCGATGCGGCCATGTGCACGGCTACCACGCCTGGGGAGGCCAAGGACGGGAGCCCGAGgatgaggtggtggaggtgggccGTGAGAGGGAGTGCCCCATGTGCCGAACCAGGGGGCCATATGTACCGTTATGGCTGGGGTGTGAGGCGGGGTTTTACTTGGACGCGGCACCGCCCACACATGCCTTTAGTCCGTGCGGTCATGTGTGCTCGGAGAAGACGGCGGCGTTCTGGAGCCAGATCCCGCTGCCACACGGCACGCACACTTTCCACGCCGCGTGTCCGTTCTGCGTGCAGCAGCTGGCCGGCGAGAGCGGCTACCTCAGACTCATCTTCCAAGGGCCCCTGGACTAGATAATGGACAGCGATCTCCTTCCAAACCTCAACTGACACTTAACAACTACCAGGGTTGTGATCATTAGGGCACACAACCGAAAACCTTttcaaatgttttgcaacagaaaatgaaaatgttagtttcttattggacaaatccaGGTAGTCCCTCACTGTTTCAGacagttttcttctgtttggtggcTCATGAACATGACCCAAGGGCCATTCAATAACCAAGTGAATGGTGGAAATACAGCTTAAAGGACTGTTAAGCATTTCTTAACTTAAATATTTTGGAGAGCTACAGAATACTTTTTTTCCAAGTGACCTTTTTTCTAGCAGTGCTGTTTTCGATACTATAATTCTATTTTCATGTTAACAATGAAAAAATGCTAACACAGAAAACTCTTCCACAGGTGCAGATTTGTAATGTTCCGATGCAAAATCCAttgtgaggctgtgtgtgtgtggcttggcGTTTTATAGTATAGTCATTTCTTTTTCTATCTGAAACTTACGAGGTGATTGTAGCAGAAACAAGCATGCTTTGTAATGCTAGCTACTGTTTTGGAATGACCTCCTTTTTCTTAGACATGAAGACCCATGTTGTTAAACTAGGCCTATTAAGTCATTATTTGGCGAttgcattaaaaaaaaagtgCTTATGGCCGTGTACCTTTTTTTTTACTATGAAACCCAACATGTTCTCTATCTTAATGTTATCAATCTCCACATCAACACGTAGGTAGGTATAAGGTGGAAGTGGAAGAATtacataatacaaaataatatCACTTTTCTCTCTGTGTACCCTTCTGCCTTTCTGAACAAGGACTGGAGAAACAGATCTATGAATTGACTGATGGAAACTTGTTGACAATGACCCATATCTGAATGTCCAGACTGTGTTCAAAGCAAGtgatcagtttttttttttctttcaattgAAGTGTGGCCCTAAAACACATTGACTTTTCAGATGGTATGAAAGTTTTCCCCTCTCATCTTCCATGTGTACCTGCattcagtgtgtatataatatttatgtttatgtttgtgtgtatgttaatTTACCCGTGTATCGCCTTCTGATCTTAATTTACGCAGTGATTGGTACCCGAATTTGAGTAATGTGCGAGAGCTTATGTTCTTTACCGTTCAACCAACTTCCATTCATGTTTTACCAGTTTGTTCTGCTTTATATCCTCTTGGTCGCCTGATGCCTTCATTCAGGACGTTGAGTATTATTTCTGCAAAGAGGGTTGCTGTTGCAgacaacacatttattttttaccaaCTGCAAAGAATAAAAGTGAAAAGCTTTGAAATTGTTCA
>TU1319157
aagttcaagggggccgaatacgttcgcaaggcactgtacatactgaaGGCCAATAATACAGGACAATGCTCAAAATAATATACTCACAGTATCTCTTCTCACTCCAAACAAATGAAAAGCACTACATTAAGTGCCTTAATGGAGAACCCAGGATCCCACCTTCACCCCACAGCTATTAAATGTGGCATCCGTAGGTTGCCGTCTACTGGACCGTTGACACATTGCAGAGCAACTCCATGTGGAgcatgtgtttgtattgtgtctGTTAATATCTTGCCATCTCTTTTCTAATATTTCTGTGTCTCTTGTCCTGAACCTCTCTCCCATTGCAGGTGGAGAGCGAGAGCCAGGAACTGGTGGATGGCTCGCTGATCGACCTGTGCGGCGCCACTCTCCTGTGGCGCACGGCCGAGGGCCTCTCGCGcactcccaccgtgaagcacctGGAGGCCCTGAGGCAGGAGCTGAATGCCGGGCGGCCCCAGTGCCCCGTGGGTTTCAACACCCTGGCCTTCCCCAGCCTCCGCCGCAAGGAGATCCTGGATGAGAAACAGCCCTGGGCCTACCTCCGATGCGGCCATGTGCACGGCTACCACGCCTGGGGAGGCCAAGGACGGGAGCCCGAGgatgaggtggtggaggtgggccGTGAGAGGGAGTGCCCCATGTGCCGAACCAGGGGGCCATATGTACCGTTATGGCTGGGGTGTGAGGCGGGGTTTTACTTGGACGCGGCACCGCCCACACATGCCTTTAGTCCGTGCGGTCATGTGTGCTCGGAGAAGACGGCGGCGTTCTGGAGCCAGATCCCGCTGCCACACGGCACGCACACTTTCCACGCCGCGTGTCCGTTCTGCGTGCAGCAGCTGGCCGGCGAGAGCGGCTACCTCAGACTCATCTTCCAAGGGCCCCTGGACTAGATAATGGACAGCGATCTCCTTCCAAACCTCAACTGACACTTAACAACTACCAGGGTTGTGATCATTAGGGCACACAACCGAAAACCTTttcaaatgttttgcaacagaaaatgaaaatgttagtttcttattggacaaatccaGGTAGTCCCTCACTGTTTCAGacagttttcttctgtttggtggcTCATGAACATGACCCAAGGGCCATTCAATAACCAAGTGAATGGTGGAAATACAGCTTAAAGGACTGTTAAGCATTTCTTAACTTAAATATTTTGGAGAGCTACAGAATACTTTTTTTCCAAGTGACCTTTTTTCTAGCAGTGCTGTTTTCGATACTATAATTCTATTTTCATGTTAACAATGAAAAAATGCTAACACAGAAAACTCTTCCACAGGTGCAGATTTGTAATGTTCCGATGCAAAATCCAttgtgaggctgtgtgtgtgtggcttggcGTTTTATAGTATAGTCATTTCTTTTTCTATCTGAAACTTACGAGGTGATTGTAGCAGAAACAAGCATGCTTTGTAATGCTAGCTACTGTTTTGGAATGACCTCCTTTTTCTTAGACATGAAGACCCATGTTGTTAAACTAGGCCTATTAAGTCATTATTTGGCGAttgcattaaaaaaaaagtgCTTATGGCCGTGTACCTTTTTTTTTACTATGAAACCCAACATGTTCTCTATCTTAATGTTATCAATCTCCACATCAACACGTAGGTAGGTATAAGGTGGAAGTGGAAGAATtacataatacaaaataatatCACTTTTCTCTCTGTGTACCCTTCTGCCTTTCTGAACAAGGACTGGAGAAACAGATCTATGAATTGACTGATGGAAACTTGTTGACAATGACCCATATCTGAATGTCCAGACTGTGTTCAAAGCAAGtgatcagtttttttttttctttcaattgAAGTGTGGCCCTAAAACACATTGACTTTTCAGATGGTATGAAAGTTTTCCCCTCTCATCTTCCATGTGTACCTGCattcagtgtgtatataatatttatgtttatgtttgtgtgtatgttaatTTACCCGTGTATCGCCTTCTGATCTTAATTTACGCAGTGATTGGTACCCGAATTTGAGTAATGTGCGAGAGCTTATGTTCTTTACCGTTCAACCAACTTCCATTCATGTTTTACCAGTTTGTTCTGCTTTATATCCTCTTGGTCGCCTGATGCCTTCATTCAGGACGTTGAGTATTATTTCTGCAAAGAGGGTTGCTGTTGCAgacaacacatttattttttaccaaCTGCAAAGAATAAAAGTGAAAAGCTTTG
>TU1319153
TCCTACACTGAGTCCGTTTACCAGTACATTAGAGCGAAAATAGTTGGACAGCATATAACAACGTCATAAACACATCTTAGCAGCTGGAGCATTCAAATTGGATTTCGAGCGAATATCGGGAAAGTCCAGATGATGCTGTCGGATTGTCATTAGAGTGTGGCGTTGTGAGCGACAGGATGACCAGTCTCTGAGGAAAAAGGAGCAGACTGAGGAAAAAGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557303.2 False 3076 mRNA 0.50 7 24086694 24134220
TU1319157 False 2230 TUCP 0.46 2 24086704 24088992
TU1319153 True 222 lncRNA 0.45 3 24108749 24134171
Loading

Neighbor

gene id symbol gene type direction distance location
vps54 LOC106585841 coding downstream 2071 24066642 ~ 24084623 (-)
LOC118938244 NA coding downstream 103492 23976971 ~ 23983202 (-)
LOC110486006 NA coding downstream 185521 23894129 ~ 23901173 (-)
LOC118938243 comd1 coding downstream 195992 23879473 ~ 23890702 (-)
LOC110486002 LOC106585758 coding downstream 324894 23754159 ~ 23761800 (-)
LOC110486015 LOC106585904 coding upstream 26038 24160258 ~ 24169942 (-)
LOC110486017 LOC106585917 coding upstream 47216 24181436 ~ 24184545 (-)
spred2a spred2 coding upstream 92343 24226563 ~ 24251943 (-)
LOC110486022 LOC105021516 coding upstream 192398 24326618 ~ 24341988 (-)
LOC110486023 LOC106586019 coding upstream 208242 24342462 ~ 24344998 (-)
G1156699 NA non-coding downstream 34367 24040443 ~ 24052327 (-)
G1156698 NA non-coding downstream 40016 24046235 ~ 24046678 (-)
G1156741 NA non-coding downstream 53349 24033113 ~ 24033345 (-)
G1156739 NA non-coding downstream 55579 24030636 ~ 24031115 (-)
G1156731 NA non-coding downstream 71376 24015030 ~ 24015318 (-)
G1156822 NA non-coding upstream 77586 24211806 ~ 24212036 (-)
G1156827 NA non-coding upstream 81374 24215594 ~ 24215872 (-)
G1156828 NA non-coding upstream 82474 24216694 ~ 24217161 (-)
G1156830 NA non-coding upstream 86645 24220865 ~ 24221226 (-)
LOC110485996 LOC106586353 other downstream 379507 23699036 ~ 23707634 (-)
G1156460 LOC106585723 other downstream 485004 23599507 ~ 23601690 (-)
G1155782 LOC106585672 other downstream 683062 23402379 ~ 23403632 (-)
G1155674 NA other downstream 836462 23226214 ~ 23250232 (-)
LOC110485982 LOC106567469 other downstream 866885 23216183 ~ 23220256 (-)
G1156864 NA other upstream 164699 24298919 ~ 24300232 (-)
G1157012 NA other upstream 432419 24566639 ~ 24566962 (-)
G1157522 ifm3 other upstream 937266 25071149 ~ 25103009 (-)
G1157525 NA other upstream 942927 25077147 ~ 25080569 (-)
G1160103 NA other upstream 1813870 25948090 ~ 25951532 (-)
LOC110486013 LOC106585880 other downstream 19757 24086694 ~ 24134220 (-)

Expression

LOC110486013(LOC106585880) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110486013(LOC106585880) Expression in each Bioproject

Bar chart with 21 bars.
LOC110486013(LOC106585880) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network