LOC110486014 (LOC106585894)


Basic Information

Item Value
gene id LOC110486014
gene name LOC106585894
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24145212 ~ 24158953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557304.2
TCTGCTTCTCAAGCAGTGGAAAAACCAAAAGCTCTTGTTGCATGCTGGGTAATATTCGGAGAGAGAAGGGGCCAAAGTAGGATCATCATAACCGGCTGACTCAACCTAGTTTTCTCTGTCAGAGCGAAACCACTTTGCTGTCTTGTTTTAAGTCTGACAAGTGTCCACTTCATCTGAACCATGGGAATGAATGGTCAAGATTTTAAGGTGTAACCTCAAGGCGTAGTGTGACTGCTTTAGGACCATGGAGCCGGACGTGATCCGCATGTactcctcctccccacccccaATGGAGGATGgagctgaggaagaggaggacgagttTGGGGACTTTGGGGGCTTCTCTGGAGTTCCGACCAGCACCAGCTtcaatgagtttgacaccccagCGACCTTCAATCAGACCCCAGCCTTGGCTGCCACTTCACCACCTGAACTCCTCAACAATGGAGGGGTGGTTAGGTTGTCAAACCTCAGTTCAGGTCCCGTGGGAAGGGGTCCCGTGGTCAAGCGCGCCAACTCCAAGTCAAATGGTGTTGTGCCGGGAGGCTGTCAGTACGACAGTCCTTTGGAGAGAACTGTGAATGTGGAGGAGTTAAAAAAGCTTGCCGACCACACTCGAGCCAATAATCATTCTACCTCCTTGGACAAATCTGTGAGGGGTCAGACTGACAACATAGACAAGCCTGTCGACTGCAATGGTGGGGTCCCGGAAGTTCTGACCAACGGCTTTGTGACTTTTGAAATAGAGGGAATCCCATCTTTGCAGAATTCGAACCGCTCTAAAAAGAAAGGAACCACCACAGAGTGTGCCGACAACTGCCCTCCCAGCAGCCCCGAGGACGACTTTGCGGATTTCTCTGCTTTTCCTAATGTAGACGTTCAAGGACACTCCAGCGAGGTGACAAACCTCACCAGCGAGAACTTGGACAATAGCAACCGGGACGAACGGCTGGCAGAGGACACCTGTCAGCAGCAGAGGCAGCAGAAGCACTCTAATGTAGAGCAGGGAATCAGGTCAGGGGACGTCGTCAGGGACACTCCCATTACAACTGGATCCAACGACATCGCTAGCTCTGATTCTCTATCGCACCTTGCTGAGGTTCGAGACACTGATGAAGGCTTGAGCAACGGGGACGGGGGCTTTCAAAGAGACACTGCTAATTCTGAGCAAAGGAACATAGAGCCGGACTTTGCACACAAGCACTCTGCTACTGAGATGATTGTTAGTGAGGATTCTGCCCCAGAGGAGGTTTGTAGTGAGGATTCTACCCAAGAGTTGGTTTGTGGCGAGGATTCTGCCTCCAAGGCACTTTATATTGACGAACCAGTTGCCCAGAACGGTGTGTATTTGGAGCAGTCGGAAGAGGaggcagaagaagagaaggcagGTGTCAGTGAAAACAGGGGTTCGCCTGATACAGACGATGAAGATGTGAATGGCGAGCAAGCAGACGAAAAGTCTGCGTCCGGAAacgaaacagaaacagagaccgAAACGTCTTTCGGCCGACCGCTGTCCACGGATGCCCTTGAGGAGTACGGCGACATCAGCACGACGGGCTCTGTGCCCTCGCCACTGCTCCAAGAGGAGACGGCCACGCCTGCCGACCACAGCCAGCTGCTGGAGGACGACGACGACGGTGAAGACTTTGGAGACTTCGGGGACGCGGGCTCTTTTAGCGGACAGGGCTTTGCTGACTTTGACCAGCCAGAGTTGCAACTAGAGGAACAACCTGCACCTCCCACACAGGAACTAGTGGACCACGACAAAGACTTTGGTGAATTTGACGCCCCCAACAGCCACATTGGTGGTGGGAAGGCAATTGAGAATGAAGATAGGGGGAAGTTTGCGGATTTTCCCAGCAGCAACAGTTTTGCCGACTTTAGCTCAGCTCCTGTTGGTGCTGACCCTGATCCAGATGCTGGTTGGAATGCCTTTGATGAGCCTGTACAGGGTCAAGGGGAGGGAAATTCCTGGGCTGCATTTGGAGAGGAGCCGACCGCCAATGCTCCTTTGGAAACGGGTGAAGACAAGTGGCAGGAGAGTGAACCTGTAGCAGCCCATTCATCCAGCAGCCATCAGATCAGTAGAAGAGACAGTCAGTCTGTGGCGCTGTGCAGTCGGCTGGAGAAGCTTTTTCTGGAAATTTTCCCCGACGCACCTGCTCCGCAGGTGAGGGTGGAGGTGGTCTCCCTCAAAACCCTGCTGGAGCCTCCTGTGAGGTTACAGCAGGAAGAGCATGAAATGATGAGCGGTGTGCCAGACAATGGGGCCGAGGGGGACGTGTTGTGGAGGCAACTGCTGGACATCCACGAGGCATTTGGCCTGCGGCACCAGTGGGGCGGCTCGCATAGCAACAAGACACTACTCTGCTCCCTGGGCATCGACATTAGGAACATTCTTTTCACAGGTCAGAAGAAGCAGCCAGTGATAGTTCCCATGTATGCTGCCAGCCTGGGCATGCTGGAACCCACCAAAGAGCCAGTAAAACCCATATCAGCGGCAGAGATGATCACGTCCATAGCACAACAAGTACCTCCAGTGGCCCCAGCAGAGATCATAAGCACTAGTCCACCAGACACAGCCCAGGAAGTGCTCCCGCCCGTCCAGTTTGACTGGAGCAGCAGTGGCCTTACGAACCCTCTGGACGCGAGCGGAGGCTCGTCTCTGCTCAACCTCGATTTCTTTGGGCCCGTGGAGGACTCTGGCCCTAGCAGCTCCACCTCCATCCCAGGTGTGGACCCGGAGCTGTATGAGCTAACCACCGCTAAACTGGACCCCAGTGGCTCTGGGACCCGTGTGGCTGATGCCTTTGCCCGCCTTATGTCTACTATGGAGAAGACCAGCACCTCTACCAGAAAGCCCCGGAAAGAGGAGAACCTAAGTGAGGAGACGTTGAAAGTGATTGCAGGGCTACCAGACCTGTCTTTCATGCAGGCCAAGGTGCTGATGTTCCCCACCACGCTGACCCCCCTGGGCTGCTCCTCTGACCCTGACCCCACACTCGACTGATCCACCCCGCCTCAACTCCATCAatgccctcctcttctcctccttatcACCGTCTGTCATTCTATCACTATATCATGAAGTTATATACTTTTTGCTTCCATGCCATTATCCTTTTTTGTCATTTTCtccctttttttttatttgttattttcagTTTTAATCTTTTTAATCAAGTGAAGCATTTAGCGATTTGTCCTTGTGAATGGAGAATGTTTAGTCAGACCTGGACTAGGCTAAGCCTGTAAAGCGAAGCTTTGTCAATAGCAGAGCAAGAGAACATATTAAGGAAGTTTAACTTCTAGATCAAGGTCCTTGAGAGAGGCCGCTTGTTTATGATAGGAGAATCAATGTGTACATAATCAGGGACGAATTGTGTTGGTTTTCAAAGGTGGCTTTTACGTTTCTCATTGTGGCGGGCGTGTGTCAATGTTTGTCTTTGTGAGGAAATGAAACACTGGTTGAACCTCTTCAAAGCGAGGCTTGAGTAAAGTGAAGtgggatatacactgagtgtagaaaccattaggaacactttcctaatatagagttgcacctccttttgccctcagaacagcctcaattcgtcggggtgtggactctacaaggtgtcgaaagcgttccacagggatgctggcccaatgcataccacagttgtcaagttgactGGCACCcatatacacaatacacaatgtctcaattgtctccaggcttaaaaatccttctttaacatttcatctacactgatggaagtggatttaacaagtgacatcaataaggaatcatagctttcacctggtcagtcatggaaagagcaggcagtcctaatgttttgttcactcagtgtatgaCTTGAAACCACACTGCCTGCAAAATCCAGCTGAATGTTTTTTTCCCTGTTGTGTTAATGGCCTTAGTTGTTTTGTCCTTTTACATAAGGCCTAGGTTTGATTCTTAACTTGATTTCTTAACCCATGGCTAAAAATGCGCTCTTAATGTATGCTCATTCGTTAAGCGATTTAACTGTAGCCAGTTTTTCTTGCGTCTCCCATTGATGCAGTCAAACAGCCATGAAAATGGCGGTATGTCACGGACGACTGTGTTTTGTGTTGAATTCTATTCTTTAGACCTTTATTCTGTTTTGGGGACGGGTGGTAAAAAGAGGGGGAATCATGGTTTAAACCACTGACATAGTCATTCGTATAATTTCAATCGTTTATATCAGTATAGCTGGTCTGAGTGAAGGTCAGCCTACATTACAAGGGAATAAGGGACCAATTTCTGCTTCCATGTGTCTGGTTATACACTTATgaagttatttttattttgtttagttTTGCTGACATTCTCTACCAATTTTGTTGTTATACCACTGTCAACCTGTTCCCGGGAGGATTTTGCACATTGTAAAGATGAAATGGATGTAATCATAGTTCACTGTGGCTTTAGACTGTGTACTATGGACTGTAAAATGTATGGGGAAAATTCCTATGGAAAAAAAATAACTTGAAGAGCCTGTGAAAAGGTTAACATGCATGTCCGGGTTCTTTTCAGACTTTAAGTGTGTAAATTTTACTTTTAGTGTACACAAGAAATTAAAATAATTTAAGAGGAAAAA
>XM_021557305.2
CTGCTTCTCAAGCAGTGGAAAAACCAAAAGCTCTTGTTGCATGCTGGGTAATATTCGGAGAGAGAAGGGGCCAAAGTAGGATCATCATAACCGGCTGACTCAACCTAGTTTTCTCTGTCAGAGCGAAACCACTTTGCTGTCTTGTTTTAAGTCTGACAAGTGTCCACTTCATCTGAACCATGGGAATGAATGGTCAAGATTTTAAGGTGTAACCTCAAGGCGTAGTGTGACTGCTTTAGGACCATGGAGCCGGACGTGATCCGCATGTactcctcctccccacccccaATGGAGGATGgagctgaggaagaggaggacgagttTGGGGACTTTGGGGGCTTCTCTGGAGTTCCGACCAGCACCAGCTtcaatgagtttgacaccccagCGACCTTCAATCAGACCCCAGCCTTGGCTGCCACTTCACCACCTGAACTCCTCAACAATGGAGGGGTGGTTAGGTTGTCAAACCTCAGTTCAGGTCCCGTGGGAAGGGGTCCCGTGGTCAAGCGCGCCAACTCCAAGTCAAATGGTGTTGTGCCGGGAGGCTGTCAGTACGACAGTCCTTTGGAGAGAACTGTGAATGTGGAGGAGTTAAAAAAGCTTGCCGACCACACTCGAGCCAATAATCATTCTACCTCCTTGGACAAATCTGTGAGGGGTCAGACTGACAACATAGACAAGCCTGTCGACTGCAATGGTGGGGTCCCGGAAGTTCTGACCAACGGCTTTGTGACTTTTGAAATAGAGGGAATCCCATCTTTGCAGAATTCGAACCGCTCTAAAAAGAAAGGAACCACCACAGAGTGTGCCGACAACTGCCCTCCCAGCAGCCCCGAGGACGACTTTGCGGATTTCTCTGCTTTTCCTAATGTAGACGTTCAAGGACACTCCAGCGAGGTGACAAACCTCACCAGCGAGAACTTGGACAATAGCAACCGGGACGAACGGCTGGCAGAGGACACCTGTCAGCAGCAGAGGCAGCAGAAGCACTCTAATGTAGAGCAGGGAATCAGGTCAGGGGACGTCGTCAGGGACACTCCCATTACAACTGGATCCAACGACATCGCTAGCTCTGATTCTCTATCGCACCTTGCTGAGGTTCGAGACACTGATGAAGGCTTGAGCAACGGGGACGGGGGCTTTCAAAGAGACACTGCTAATTCTGAGCAAAGGAACATAGAGCCGGACTTTGCACACAAGCACTCTGCTACTGAGATGATTGTTAGTGAGGATTCTGCCCCAGAGGAGGTTTGTAGTGAGGATTCTACCCAAGAGTTGGTTTGTGGCGAGGATTCTGCCTCCAAGGCACTTTATATTGACGAACCAGTTGCCCAGAACGGTGTGTATTTGGAGCAGTCGGAAGAGGaggcagaagaagagaaggcagGTGTCAGTGAAAACAGGGGTTCGCCTGATACAGACGATGAAGATGTGAATGGCGAGCAAGCAGACGAAAAGTCTGCGTCCGGAAacgaaacagaaacagagaccgAAACGTCTTTCGGCCGACCGCTGTCCACGGATGCCCTTGAGGAGTACGGCGACATCAGCACGACGGGCTCTGTGCCCTCGCCACTGCTCCAAGAGGAGACGGCCACGCCTGCCGACCACAGCCAGCTGCTGGAGGACGACGACGACGGTGAAGACTTTGGAGACTTCGGGGACGCGGGCTCTTTTAGCGGACAGGGCTTTGCTGACTTTGACCAGCCAGAGTTGCAACTAGAGGAACAACCTGCACCTCCCACACAGGAACTAGTGGACCACGACAAAGACTTTGGTGAATTTGACGCCCCCAACAGCCACATTGGTGGTGGGAAGGCAATTGAGAATGAAGATAGGGGGAAGTTTGCGGATTTTCCCAGCAGCAACAGTTTTGCCGACTTTAGCTCAGCTCCTGTTGGTGCTGACCCTGATCCAGATGCTGGTTGGAATGCCTTTGATGAGCCTGTACAGGGTCAAGGGGAGGGAAATTCCTGGGCTGCATTTGGAGAGGAGCCGACCGCCAATGCTCCTTTGGAAACGGGTGAAGACAAGTGGCAGGAGAGTGAACCTGTAGCAGCCCATTCATCCAGCAGCCATCAGATCAGTAGAAGAGACAGTCAGTCTGTGGCGCTGTGCAGTCGGCTGGAGAAGCTTTTTCTGGAAATTTTCCCCGACGCACCTGCTCCGCAGGTGAGGGTGGAGGTGGTCTCCCTCAAAACCCTGCTGGAGCCTCCTGTGAGGTTACAGCAGGAAGAGCATGAAATGATGAGCGGTGTGCCAGACAATGGGGCCGAGGGGGACGTGTTGTGGAGGCAACTGCTGGACATCCACGAGGCATTTGGCCTGCGGCACCAGTGGGGCGGCTCGCATAGCAACAAGACACTACTCTGCTCCCTGGGCATCGACATTAGGAACATTCTTTTCACAGGTCAGAAGAAGCAGCCAGTGATAGTTCCCATGTATGCTGCCAGCCTGGGCATGCTGGAACCCACCAAAGAGCCAGTAAAACCCATATCAGCGGCAGAGATGATCACGTCCATAGCACAACAAGTACCTCCAGTGGCCCCAGCAGAGATCATAAGCACTAGTCCACCAGACACAGCCCAGGAAGTGCTCCCGCCCGTCCAGTTTGACTGGAGCAGCAGTGGCCTTACGAACCCTCTGGACGGTGTGGACCCGGAGCTGTATGAGCTAACCACCGCTAAACTGGACCCCAGTGGCTCTGGGACCCGTGTGGCTGATGCCTTTGCCCGCCTTATGTCTACTATGGAGAAGACCAGCACCTCTACCAGAAAGCCCCGGAAAGAGGAGAACCTAAGTGAGGAGACGTTGAAAGTGATTGCAGGGCTACCAGACCTGTCTTTCATGCAGGCCAAGGTGCTGATGTTCCCCACCACGCTGACCCCCCTGGGCTGCTCCTCTGACCCTGACCCCACACTCGACTGATCCACCCCGCCTCAACTCCATCAatgccctcctcttctcctccttatcACCGTCTGTCATTCTATCACTATATCATGAAGTTATATACTTTTTGCTTCCATGCCATTATCCTTTTTTGTCATTTTCtccctttttttttatttgttattttcagTTTTAATCTTTTTAATCAAGTGAAGCATTTAGCGATTTGTCCTTGTGAATGGAGAATGTTTAGTCAGACCTGGACTAGGCTAAGCCTGTAAAGCGAAGCTTTGTCAATAGCAGAGCAAGAGAACATATTAAGGAAGTTTAACTTCTAGATCAAGGTCCTTGAGAGAGGCCGCTTGTTTATGATAGGAGAATCAATGTGTACATAATCAGGGACGAATTGTGTTGGTTTTCAAAGGTGGCTTTTACGTTTCTCATTGTGGCGGGCGTGTGTCAATGTTTGTCTTTGTGAGGAAATGAAACACTGGTTGAACCTCTTCAAAGCGAGGCTTGAGTAAAGTGAAGtgggatatacactgagtgtagaaaccattaggaacactttcctaatatagagttgcacctccttttgccctcagaacagcctcaattcgtcggggtgtggactctacaaggtgtcgaaagcgttccacagggatgctggcccaatgcataccacagttgtcaagttgactGGCACCcatatacacaatacacaatgtctcaattgtctccaggcttaaaaatccttctttaacatttcatctacactgatggaagtggatttaacaagtgacatcaataaggaatcatagctttcacctggtcagtcatggaaagagcaggcagtcctaatgttttgttcactcagtgtatgaCTTGAAACCACACTGCCTGCAAAATCCAGCTGAATGTTTTTTTCCCTGTTGTGTTAATGGCCTTAGTTGTTTTGTCCTTTTACATAAGGCCTAGGTTTGATTCTTAACTTGATTTCTTAACCCATGGCTAAAAATGCGCTCTTAATGTATGCTCATTCGTTAAGCGATTTAACTGTAGCCAGTTTTTCTTGCGTCTCCCATTGATGCAGTCAAACAGCCATGAAAATGGCGGTATGTCACGGACGACTGTGTTTTGTGTTGAATTCTATTCTTTAGACCTTTATTCTGTTTTGGGGACGGGTGGTAAAAAGAGGGGGAATCATGGTTTAAACCACTGACATAGTCATTCGTATAATTTCAATCGTTTATATCAGTATAGCTGGTCTGAGTGAAGGTCAGCCTACATTACAAGGGAATAAGGGACCAATTTCTGCTTCCATGTGTCTGGTTATACACTTATgaagttatttttattttgtttagttTTGCTGACATTCTCTACCAATTTTGTTGTTATACCACTGTCAACCTGTTCCCGGGAGGATTTTGCACATTGTAAAGATGAAATGGATGTAATCATAGTTCACTGTGGCTTTAGACTGTGTACTATGGACTGTAAAATGTATGGGGAAAATTCCTATGGAAAAAAAATAACTTGAAGAGCCTGTGAAAAGGTTAACATGCATGTCCGGGTTCTTTTCAGACTTTAAGTGTGTAAATTTTACTTTTAGTGTACACAAGAAATTAAAATAATTTAAGAGGAAAAA

Function

NR:

description
aftiphilin-like isoform X2

GO: NA

KEGG:

id description
K25218 AFTPH; aftiphilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557304.2 False 4631 mRNA 0.49 10 24145212 24158953
XM_021557305.2 True 4546 mRNA 0.49 9 24145213 24158953

Neighbor

gene id symbol gene type direction distance location
LOC110486011 LOC106585850 coding upstream 78829 24049629 ~ 24066383 (+)
LOC110486012 LOC106585868 coding upstream 98534 24035212 ~ 24046678 (+)
LOC110486008 LOC106564858 coding upstream 154780 23984759 ~ 23990432 (+)
LOC110485113 NA coding upstream 223554 23914319 ~ 23921658 (+)
LOC110486007 LOC106585823 coding upstream 233009 23894045 ~ 23912203 (+)
actr2a LOC106585927 coding downstream 31100 24190053 ~ 24210340 (+)
LOC110486019 LOC106585964 coding downstream 102994 24261947 ~ 24300246 (+)
LOC110486021 LOC106585998 coding downstream 158095 24317048 ~ 24321237 (+)
LOC118938548 NA coding downstream 212671 24371624 ~ 24373364 (+)
LOC110486025 LOC106586048 coding downstream 254567 24413520 ~ 24441284 (+)
G1156139 NA non-coding upstream 47368 24096092 ~ 24097844 (+)
G1156126 NA non-coding upstream 60479 24082688 ~ 24084733 (+)
G1156109 NA non-coding upstream 111621 24033386 ~ 24033591 (+)
G1156107 NA non-coding upstream 114079 24030913 ~ 24031133 (+)
G1156104 NA non-coding upstream 118314 24026675 ~ 24026898 (+)
G1156214 NA non-coding downstream 52157 24211110 ~ 24211418 (+)
G1156216 NA non-coding downstream 54546 24213499 ~ 24213708 (+)
G1156219 NA non-coding downstream 59110 24218063 ~ 24218297 (+)
G1156220 NA non-coding downstream 61669 24220622 ~ 24220931 (+)
G1156222 NA non-coding downstream 63104 24222057 ~ 24222343 (+)
G1156089 NA other upstream 141244 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 546209 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 573432 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1185861 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1534933 22606256 ~ 22610371 (+)
G1156247 NA other downstream 167830 24326783 ~ 24328963 (+)
G1157117 NA other downstream 605149 24764102 ~ 24764346 (+)
G1157292 NA other downstream 942587 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1254156 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 1303974 25462927 ~ 25463458 (+)

Expression


Co-expression Network