Item | Value |
---|---|
gene id | LOC110486019 |
gene name | LOC106585964 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048577.1 |
NCBI id | CM023231.2 |
chromosome length | 73332040 |
location | 24261947 ~ 24300246 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
unnamed protein product |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0045766 | positive regulation of angiogenesis | biological_process |
GO:0000082 | G1/S transition of mitotic cell cycle | biological_process |
GO:0009880 | embryonic pattern specification | biological_process |
GO:0048844 | artery morphogenesis | biological_process |
GO:0030223 | neutrophil differentiation | biological_process |
GO:0030225 | macrophage differentiation | biological_process |
GO:0060216 | definitive hemopoiesis | biological_process |
GO:0035907 | dorsal aorta development | biological_process |
GO:0001885 | endothelial cell development | biological_process |
GO:0072554 | blood vessel lumenization | biological_process |
GO:0050821 | protein stabilization | biological_process |
GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
GO:0001947 | heart looping | biological_process |
GO:0035476 | angioblast cell migration | biological_process |
GO:0060319 | primitive erythrocyte differentiation | biological_process |
GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
GO:0060841 | venous blood vessel development | biological_process |
GO:0005829 | cytosol | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0005515 | protein binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036940674.1 | False | 3170 | mRNA | 0.49 | 13 | 24261947 | 24300246 |
XM_036940673.1 | False | 3166 | mRNA | 0.49 | 13 | 24261948 | 24300246 |
TU1318541 | True | 1676 | lncRNA | 0.46 | 4 | 24295426 | 24300241 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
actr2a | LOC106585927 | coding | upstream | 51607 | 24190053 ~ 24210340 (+) |
LOC110486014 | LOC106585894 | coding | upstream | 102994 | 24145212 ~ 24158953 (+) |
LOC110486011 | LOC106585850 | coding | upstream | 195564 | 24049629 ~ 24066383 (+) |
LOC110486012 | LOC106585868 | coding | upstream | 215269 | 24035212 ~ 24046678 (+) |
LOC110486008 | LOC106564858 | coding | upstream | 271515 | 23984759 ~ 23990432 (+) |
LOC110486021 | LOC106585998 | coding | downstream | 16802 | 24317048 ~ 24321237 (+) |
LOC118938548 | NA | coding | downstream | 71378 | 24371624 ~ 24373364 (+) |
LOC110486025 | LOC106586048 | coding | downstream | 113274 | 24413520 ~ 24441284 (+) |
esf1 | LOC106564836 | coding | downstream | 164086 | 24464332 ~ 24476087 (+) |
LOC110486030 | LOC106586106 | coding | downstream | 184358 | 24484604 ~ 24522503 (+) |
G1156177 | spred2 | non-coding | upstream | 32709 | 24224783 ~ 24229238 (+) |
G1156222 | NA | non-coding | upstream | 39604 | 24222057 ~ 24222343 (+) |
G1156220 | NA | non-coding | upstream | 41016 | 24220622 ~ 24220931 (+) |
G1156219 | NA | non-coding | upstream | 43650 | 24218063 ~ 24218297 (+) |
G1156216 | NA | non-coding | upstream | 48239 | 24213499 ~ 24213708 (+) |
G1156273 | NA | non-coding | downstream | 9202 | 24309448 ~ 24309654 (+) |
G1156276 | NA | non-coding | downstream | 13913 | 24314159 ~ 24314369 (+) |
G1156286 | NA | non-coding | downstream | 53928 | 24354174 ~ 24354853 (+) |
G1156292 | NA | non-coding | downstream | 67283 | 24367529 ~ 24367754 (+) |
G1156294 | NA | non-coding | downstream | 70028 | 24370274 ~ 24370496 (+) |
G1156089 | NA | other | upstream | 257979 | 23998646 ~ 24003968 (+) |
LOC110485992 | LOC106585723 | other | upstream | 662944 | 23595876 ~ 23608606 (+) |
pitpnc1a | LOC106585713 | other | upstream | 690167 | 23511706 ~ 23591433 (+) |
G1155006 | LOC100136012 | other | upstream | 1302596 | 22958932 ~ 22959351 (+) |
c13h17orf67 | LOC106564992 | other | upstream | 1651668 | 22606256 ~ 22610371 (+) |
G1156247 | NA | other | downstream | 26537 | 24326783 ~ 24328963 (+) |
G1157117 | NA | other | downstream | 463856 | 24764102 ~ 24764346 (+) |
G1157292 | NA | other | downstream | 801294 | 25082584 ~ 25105138 (+) |
LOC110486053 | polr3f | other | downstream | 1112863 | 25410869 ~ 25419361 (+) |
G1157952 | LOC106584892 | other | downstream | 1162681 | 25462927 ~ 25463458 (+) |