LOC110486019 (LOC106585964)



Basic Information


Item Value
gene id LOC110486019
gene name LOC106585964
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24261947 ~ 24300246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036940674.1
tTGGAGACCCAAGCACGGCATTCGCACTGCACATCGGGATCCACCAACACACCCACGGACAGTCGACGGCTCCTTTAAGAAAAACTAAGTAAGAAAATATCACCCCTCCTTCTTCAGATCTCCACTTGGATGTTATTGCATCAAAGAAAACCTTCACTGGAGTTGCAAGTGATCGAGGACACGATGGGGACTGTTTTTGAACATCTTTACATGAATATCTGAAGAATTCCAAGTGAGGGAAGAGCGCGACGAGTCATCATTAATTAAGCAACTTGACAACCTCGATATTGATTGACAGCTTGCTTGTTGAGCGAGACTAGAgtatcaatgttttttttctttttctgtaAGGGGCATTTTACACCAGTCTCAAGCGTGAAGTCGTAGCCGAGTGTCGCTTGTCTATGAACGGTCtccaggagaaagagaaggagctCTGTACTGGATTGTGGTGTTTTTATCTACTGCTGGATTTATGCTGGCAGTCTAGCAACCATCCTCTCTGGAGAGACGAGCACAATATTCTTAATCTTGCATTTGGAGTTAGGTGTTTATTTTCCCTCAGCCCTGGCCTCGTAGAAGACGTTTAGAGTCCGATTGGAATCGGCGAGAGTGACAGGCCGATGGCGCAACGGTATGAAGACCTTCCCCACTATGGAATGGACGGAGTAGGGCTGCCCTCGACTATGTACGGGGACCCTCATGCAGCGCGCTCCATGCAGGCGGTTCACCTGAACCACGGGCCCCAGTTCCACTCGCACCAGTACCCGCACTCAACACACGCCAGTGCCATACCGCCCAGTATGGGCTCCTCAGTCAACGACGCTATAAAAAGAGACAAAGATGCCATTTACGGGCACCCTCTTTTCCCACTTCTAGCTCTGATTTTTGAAAAATGTGAATTAGCAACTTGCACGCCGAGAGAAACTGGGGTCGCTGGAGGCGACGTGTGTTCCTCCGAGTCTTTTAATGAGGATATAGCAGTATTTTCAAAACAGATTCGATCGGAGAAGCCTATATTTTCATCAAATCCAGAAATTGATAACTTGATGATACAAGCAATTCAAGTATTACGGTTTCATCTGCTCGAGCTGGAGAAGGTACACGAGTTATGCGATAATTTCTGTCATCGATACATCAGCTGCTTGAAAGGAAAAATGCCCATTGATTTGGTCATAGACGACAGGGACGGTGGAAATAAATCTGACAGTGAAGATTTTACAAGATCGTCTGGGCCTCTTGATCAGATCTCGTGGAGCAGAGACCACGATGACACGGCATCAGTTCGCTCGGCGGGGACGCCCGGGCCCTCCAGTGGGGGACACACGTCACACAGTGGGGACAACAACAGTGAAGAAGGTGACTGCATGGACAACGGGGTGGCCTCTCCCAGCACTGGGGACGACGACGACCCTGACAAGGAAAAGAGGGATCGTCACAACAAGAAGCGAGGCATCTTCCCTAAAGTGGCCACCAACATCATGAGGGCGTGGCTCTTCCAGCACTTAACGCATCCTTACCCTTCGGAAGAGCAGAAGAAACAACTGGCCCAGGACACAGGGTTAACGATCCTACAAGTCAACAATTGGTTCATCAACGCGAGACGAAGAATTGTACAGCCCATGATCGACCAGTCCAATAGAGCAGTGACTGGAGGAGGGCCCTACACCCCAGATGGTCAACCAATGGGAGGGTTCGTTATGGACGGCCAGACACACATGGGAATCAGACCACCTGGGCCCATGGGTGGGATGGGCATGGGTATGGGCGTGGAGGGACAGTGGCACTACATGTGACCCCTTGCGGACTTAGCACAGAGCCCAAAGGGACGCACTCAGAACTGCCAGGTATTCCCGAGGACGGCGTGTCCCATGGCGGTTGGATCAGCACGGATATGGGCATCACTCTGACCTTCACTGGTGCCCCTACCATCACCTCTACCCTCCCACCAACCAGCCCCACCGCTGGGGCATGATCTCTCAGTGTTGCCCCTCCCTCCGTGACTCTTCCGTGACCCAGCGATATCAATTGCGCTGGTGCCCAGCCCAAACTCACCACCATCACCTGACTGTTTGTCAGTAGGGCtggtgccacccccccccccctttccaacTTCCCCCATTTCCTTCAAGTGGTTCAGTCTGAGTAGCCACTGTTGCTGAACCACCATCGTGACTATGAGAGGCCTTGGAAACCCTATCATGCCTTGTGAAGACTTCTGACATTGTGAAGACTTCTGACGTTGTGTGGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGGCGTGGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACCTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGGCGTTGTGAGGACTTCTGGCGTTGTGAGGACTTCTGACGTTGTGTGGACTTCTGACGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAGGACTTCTGACGTTCTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCCCTTCTGGGGACTACAATTACTGGAGCTCTCCAGTGGATACTTCAATACTCTGTTAATTCGACCGATACAAACAAACACTTAGTCCTTCACTTTTCCCTTCTCTGCTGCATTGCATGGACAGTTATAGATGGTGAAGACACTCTTGTCTTGGCAGTGGACTTGTAAGCAAGAGAAGAAGCCGATGTCCGTATTTTACTGGGGGGTCTTTTTAAACAACAAACACCCTGGAAAccattcttctttttttttttttaataatgaaATTGTTGTAATTGTGGAAAATTACAATAAGGTGAGGCAATAGTGTCCTGTTTACAGTTTTACCACAAACTCTCTACGGACGAGTAACGATAACTATTGCAAGTGCTCTGGTATTGCTTTGCCGTACTGTGCTGTTTTTTTAAAAAAGGACTTGACTTGTCTAATTCACACTATGTGTGTGAGTCTTTTTTCATAGACTTTTATCTCCTACCCCCACGAATCTCTTTGCgtttgaaaataaaaaataagttacagacCCA
>XM_036940673.1
TGGAGACCCAAGCACGGCATTCGCACTGCACATCGGGATCCACCAACACACCCACGGACAGTCGACGGCTCCTTTAAGAAAAACTAAGTAAGAAAATATCACCCCTCCTTCTTCAGATCTCCACTTGGATGTTATTGCATCAAAGAAAACCTTCACTGGAGTTGCAAGTGATCGAGGACACGATGGGGACTGTTTTTGAACATCTTTACATGAATATCTGAAGAATTCCAAGTGAGGGAAGAGCGCGACGAGTCATCATTAATTAAGCAACTTGACAACCTCGATATTGATTGACAGCTTGCTTGTTGAGCGAGACTAGAgtatcaatgttttttttctttttctgtaAGGGGCATTTTACACCAGTCTCAAGCGTGAAGTCGTAGCCGAGTGTCGCTTGTCTATGAACGGTCtccaggagaaagagaaggagctCTGTACTGGATTGTGGTGTTTTTATCTACTGCTGGATTTATGCTGGCAGTCTAGCAACCATCCTCTCTGGAGAGACGAGCACAATATTCTTAATCTTGCATTTGGAGTTAGGTGTTTATTTTCCCTCAGCCCTGGCCTCGTAGAAGACGTTTAGAGTCCGATTGGAATCGGCGAGAGTGACAGGCCGATGGCGCAACGGTATGAAGACCTTCCCCACTATGGAATGGACGGAGTAGGGCTGCCCTCGACTATGTACGGGGACCCTCATGCAGCGCGCTCCATGCAGGCGGTTCACCTGAACCACGGGCCCCAGTTCCACTCGCACCAGTACCCGCACTCAACACACGCCAGTGCCATACCGCCCAGTATGGGCTCCTCAGTCAACGACGCTATAAAAAGAGACAAAGATGCCATTTACGGGCACCCTCTTTTCCCACTTCTAGCTCTGATTTTTGAAAAATGTGAATTAGCAACTTGCACGCCGAGAGAAACTGGGGTCGCTGGAGGCGACGTGTGTTCCTCCGAGTCTTTTAATGAGGATATAGCAGTATTTTCAAAACAGATTCGATCGGAGAAGCCTATATTTTCATCAAATCCAGAAATTGATAACTTGATGATACAAGCAATTCAAGTATTACGGTTTCATCTGCTCGAGCTGGAGAAGGTACACGAGTTATGCGATAATTTCTGTCATCGATACATCAGCTGCTTGAAAGGAAAAATGCCCATTGATTTGGTCATAGACGACAGGGACGGTGGAAATAAATCTGACAGTGAAGATTTTACAAGATCGTCTGGGCCTCTTGATCAGATCTCGTGGAGCAGAGACCACGATGACACGGCATCAGTTCGCTCGGCGGGGACGCCCGGGCCCTCCAGTGGGGGACACACGTCACACAGTGGGGACAACAACAGTGAAGAAGGTGACTGCATGGACAACGGGGTGGCCTCTCCCAGCACTGGGGACGACGACGACCCTGACAAGGAAAAGAGGGATCGTCACAACAAGAAGCGAGGCATCTTCCCTAAAGTGGCCACCAACATCATGAGGGCGTGGCTCTTCCAGCACTTAACGCATCCTTACCCTTCGGAAGAGCAGAAGAAACAACTGGCCCAGGACACAGGGTTAACGATCCTACAAGTCAACAATTGGTTCATCAACGCGAGACGAAGAATTGTACAGCCCATGATCGACCAGTCCAATAGAGCAGTGACTGGAGGAGGGCCCTACACCCCAGATGGTCAACCAATGGGAGGGTTCGTTATGGACGGCCAGACACACATGGGAATCAGACCACCTGGGCCCATGGGTGGGATGGGCATGGGTATGGGCGTGGAGGGACAGTGGCACTACATGTGACCCCTTGCGGACTTAGCACAGAGCCCAAAGGGACGCACTAACTGCCAGGTATTCCCGAGGACGGCGTGTCCCATGGCGGTTGGATCAGCACGGATATGGGCATCACTCTGACCTTCACTGGTGCCCCTACCATCACCTCTACCCTCCCACCAACCAGCCCCACCGCTGGGGCATGATCTCTCAGTGTTGCCCCTCCCTCCGTGACTCTTCCGTGACCCAGCGATATCAATTGCGCTGGTGCCCAGCCCAAACTCACCACCATCACCTGACTGTTTGTCAGTAGGGCtggtgccacccccccccccctttccaacTTCCCCCATTTCCTTCAAGTGGTTCAGTCTGAGTAGCCACTGTTGCTGAACCACCATCGTGACTATGAGAGGCCTTGGAAACCCTATCATGCCTTGTGAAGACTTCTGACATTGTGAAGACTTCTGACGTTGTGTGGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGGCGTGGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACCTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGGCGTTGTGAGGACTTCTGGCGTTGTGAGGACTTCTGACGTTGTGTGGACTTCTGACGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAGGACTTCTGACGTTCTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCCCTTCTGGGGACTACAATTACTGGAGCTCTCCAGTGGATACTTCAATACTCTGTTAATTCGACCGATACAAACAAACACTTAGTCCTTCACTTTTCCCTTCTCTGCTGCATTGCATGGACAGTTATAGATGGTGAAGACACTCTTGTCTTGGCAGTGGACTTGTAAGCAAGAGAAGAAGCCGATGTCCGTATTTTACTGGGGGGTCTTTTTAAACAACAAACACCCTGGAAAccattcttctttttttttttttaataatgaaATTGTTGTAATTGTGGAAAATTACAATAAGGTGAGGCAATAGTGTCCTGTTTACAGTTTTACCACAAACTCTCTACGGACGAGTAACGATAACTATTGCAAGTGCTCTGGTATTGCTTTGCCGTACTGTGCTGTTTTTTTAAAAAAGGACTTGACTTGTCTAATTCACACTATGTGTGTGAGTCTTTTTTCATAGACTTTTATCTCCTACCCCCACGAATCTCTTTGCgtttgaaaataaaaaataagttacagacCCA
>TU1318541
CAAAGTGTTGTTATAAGTGACTTATCTCCCATTTACAGTGCTGCTGTGTATTTCGAGGTAATTACGTTCAAGTTGCCAGAACAGTAATCTATTTGCTGATATCAAGTTGCTCTTTCACAGCATAAGCCATAAGGACAACTTGATATTAACTCTTACCAATACAAACAAAGTCATTTGTTAGTAATTAAGCCTGTTGATGAAGAAAATTACCTACCAAATAATCTTGTAATTAGAGGATAATAGTGAGAGAATAATGAGGACAGACCAAACCAGGAAAGGGAGGGGGACGTTTTATGGGGGCGCACCGGTAATTAAAACTTATGCAATATTCTAATTAGCAATTCCTACTGTCTCGGCCTGTGTTTTTTCGCCAGTGACTGGAGGAGGGCCCTACACCCCAGATGGTCAACCAATGGGAGGGTTCGTTATGGACGGCCAGACACACATGGGAATCAGACCACCTGGGCCCATGGGTGGGATGGGCATGGGTATGGGCGTGGAGGGACAGTGGCACTACATGTGACCCCTTGCGGACTTAGCACAGAGCCCAAAGGGACGCACTAACTGCCAGGTATTCCCGAGGACGGCGTGTCCCATGGCGGTTGGATCAGCACGGATATGGGCATCACTCTGACCTTCACTGGTGCCCCTACCATCACCTCTACCCTCCCACCAACCAGCCCCACCGCTGGGGCATGATCTCTCAGTGTTGCCCCTCCCTCCGTGACTCTTCCGTGACCCAGCGATATCAATTGCGCTGGTGCCCAGCCCAAACTCACCACCATCACCTGACTGTTTGTCAGTAGGGCtggtgccacccccccccccctttccaacTTCCCCCATTTCCTTCAAGTGGTTCAGTCTGAGTAGCCACTGTTGCTGAACCACCATCGTGACTATGAGAGGCCTTGGAAACCCTATCATGCCTTGTGAAGACTTCTGACATTGTGAAGACTTCTGACGTTGTGTGGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAGGACTTCTGACGTTCTGAAGACTTCTGACGTTGTGAAGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCTGACGTTGTGAGGACTTCCCTTCTGGGGACTACAATTACTGGAGCTCTCCAGTGGATACTTCAATACTCTGTTAATTCGACCGATACAAACAAACACTTAGTCCTTCACTTTTCCCTTCTCTGCTGCATTGCATGGACAGTTATAGATGGTGAAGACACTCTTGTCTTGGCAGTGGACTTGTAAGCAAGAGAAGAAGCCGATGTCCGTATTTTACTGGGGGGTCTTTTTAAACAACAAACACCCTGGAAAccattcttctttttttttttttaataatgaaATTGTTGTAATTGTGGAAAATTACAATAAGGTGAGGCAATAGTGTCCTGTTTACAGTTTTACCACAAACTCTCTACGGACGAGTAACGATAACTATTGCAAGTGCTCTGGTATTGCTTTGCCGTACTGTGCTGTTTTTTTAAAAAAGGACTTGACTTGTCTAATTCACACTATGTGTGTGAGTCTTTTTTCATAGACTTTTATCTCCTACCCCCACGAATCTCTTTGCgtttgaaaataaaaaataagttacag

Function


NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0048844 artery morphogenesis biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035907 dorsal aorta development biological_process
GO:0001885 endothelial cell development biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0050821 protein stabilization biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0035476 angioblast cell migration biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0060841 venous blood vessel development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036940674.1 False 3170 mRNA 0.49 13 24261947 24300246
XM_036940673.1 False 3166 mRNA 0.49 13 24261948 24300246
TU1318541 True 1676 lncRNA 0.46 4 24295426 24300241

Neighbor


gene id symbol gene type direction distance location
actr2a LOC106585927 coding upstream 51607 24190053 ~ 24210340 (+)
LOC110486014 LOC106585894 coding upstream 102994 24145212 ~ 24158953 (+)
LOC110486011 LOC106585850 coding upstream 195564 24049629 ~ 24066383 (+)
LOC110486012 LOC106585868 coding upstream 215269 24035212 ~ 24046678 (+)
LOC110486008 LOC106564858 coding upstream 271515 23984759 ~ 23990432 (+)
LOC110486021 LOC106585998 coding downstream 16802 24317048 ~ 24321237 (+)
LOC118938548 NA coding downstream 71378 24371624 ~ 24373364 (+)
LOC110486025 LOC106586048 coding downstream 113274 24413520 ~ 24441284 (+)
esf1 LOC106564836 coding downstream 164086 24464332 ~ 24476087 (+)
LOC110486030 LOC106586106 coding downstream 184358 24484604 ~ 24522503 (+)
G1156177 spred2 non-coding upstream 32709 24224783 ~ 24229238 (+)
G1156222 NA non-coding upstream 39604 24222057 ~ 24222343 (+)
G1156220 NA non-coding upstream 41016 24220622 ~ 24220931 (+)
G1156219 NA non-coding upstream 43650 24218063 ~ 24218297 (+)
G1156216 NA non-coding upstream 48239 24213499 ~ 24213708 (+)
G1156273 NA non-coding downstream 9202 24309448 ~ 24309654 (+)
G1156276 NA non-coding downstream 13913 24314159 ~ 24314369 (+)
G1156286 NA non-coding downstream 53928 24354174 ~ 24354853 (+)
G1156292 NA non-coding downstream 67283 24367529 ~ 24367754 (+)
G1156294 NA non-coding downstream 70028 24370274 ~ 24370496 (+)
G1156089 NA other upstream 257979 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 662944 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 690167 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1302596 22958932 ~ 22959351 (+)
c13h17orf67 LOC106564992 other upstream 1651668 22606256 ~ 22610371 (+)
G1156247 NA other downstream 26537 24326783 ~ 24328963 (+)
G1157117 NA other downstream 463856 24764102 ~ 24764346 (+)
G1157292 NA other downstream 801294 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1112863 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 1162681 25462927 ~ 25463458 (+)

Expression



Co-expression Network