XLOC_030240 (CR377210.1)


Basic Information

Item Value
gene id XLOC_030240
gene name CR377210.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 35121048 ~ 35127014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059118
AGACACACACGAGGTGCGCAAGAAAGCCGGATGGCTAGCATATGTGGTGTTTGATACTCAGTGCTACGTTACTGTAGTATGAAAATCTCGATTCTCCAGAAAGGTGCTTTACTGGAACTGGATCGTTGAGAACGTGGAGAGGAAACAGAAGCATGAGAGGCCTTCACCCAGACAGCCCTCGTTTTCCATCCCCCCTAACGATCCTCCATCGATATCATTGAGAACCAGCGacagaattaatgaatgaacagaaaTAAACTTCCAGAATCCCTGTGTTTGAGAGAGCACAGACCTCAGATCTCAGCAGTCAGCCATGTAGCGGCCTGTGAacgcacaaaaaaacacacacacacacatcacctcCTTTGTTATTTCAAAGGCAAAACTAAAaagaagtattgaacatgtcatgacATTCACTGGTAAATATGTTTCTAAACGAGCTCTTGACATAAAATTGActcagattttggtaaaaacccaaacaatccaAACATCTGAAATTAAGTTGTGTATTATGAATGGACTGACACAAAGAGaaaatactaaaatgtattttatatttttttctttaaaagccTTTTTCTTGTTGTAATGACAGCTTGTATGGAGAATCGAGTCACATGCACTGCTCTTGTGTGATTTCTTCCCCCAGACCTCAATAGACTCTGAGGGTCTCGTCTGTTTAATCTGATCCTTAGTTCTTATTTTCTATttgattcaggtcaggtgattggcagTCATtatagcagctttattttcttttctcaaACCAACTTTCAAGCCATGTTTTCTTGGCTGCGTTTGGGGTGGtggtcttgctgaaatgtccaccttggTTTCACCTTCATCATCTGTAATTTAGGTGttgggactgaagcagctaatattcatttacaccaggggtcaccaaacttgttcctggagggccggtgtcctgcagattttagctccaaccctaattaaacacaactgaacaagctaatcaaactcttactagctatacttgaaacaaccaggcaggtgtgttgaggcaagttggagctaaaccctgcagggagaccggccctccaagaccgagattggtgacccatgATTTACACTAATgaaaggcagagggttgctgaataactactgagagattttagctgctgtctgggctttccttATCTTTTTTACACAtgccttttttcatgtgttcaatacttttctctGTGTCATGTTATTTACCCTAACTTAATTTCTAAACGAATTACCTTTGT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0035239 tube morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0072175 epithelial tube formation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0001838 embryonic epithelial tube formation biological_process
GO:0001841 neural tube formation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0035148 tube formation biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0009790 embryo development biological_process
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059118 True 1262 lncRNA 0.41 2 35121048 35127014

Neighbor

gene id symbol gene type direction distance location
XLOC_030239 foxd1 coding upstream 121495 34997763 ~ 34999553 (+)
XLOC_030238 ankra2 coding upstream 133775 34981584 ~ 34987273 (+)
XLOC_030237 BX530075.1 coding upstream 199137 34920395 ~ 34921911 (+)
XLOC_030236 NA coding upstream 283882 34828804 ~ 34837166 (+)
XLOC_030234 NA coding upstream 323697 34643447 ~ 34797351 (+)
XLOC_030241 ptger4b coding downstream 271731 35398745 ~ 35401568 (+)
XLOC_030242 fbp1b coding downstream 331176 35458190 ~ 35508088 (+)
XLOC_030243 NA coding downstream 388906 35515920 ~ 35527121 (+)
XLOC_030244 ar coding downstream 434593 35561607 ~ 35679140 (+)
XLOC_030245 yipf6 coding downstream 617609 35744623 ~ 35754882 (+)
XLOC_030235 NA non-coding upstream 389606 34721137 ~ 34731442 (+)
XLOC_030229 NA non-coding upstream 825975 34293261 ~ 34295073 (+)
XLOC_030248 NA non-coding downstream 876947 36003961 ~ 36177578 (+)
XLOC_030249 NA non-coding downstream 1140518 36267532 ~ 36275169 (+)
XLOC_030250 NA non-coding downstream 1202728 36329742 ~ 36409783 (+)
XLOC_030253 CU571324.1 non-coding downstream 1378459 36505473 ~ 36506619 (+)

Expression


Co-expression Network