LOC118938548


Basic Information

Item Value
gene id LOC118938548
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24371624 ~ 24373364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035760.1
caatttgtcggaggaaacatttgttattgttatttctATCAAAGGAAAAACCCAGTCCACTTCCAAGAACCCAGTCACCACGGAGACAGCGACTACGAGGACGATTCCGCGAAAGacgtgaaggaagaggaggacgtGGACCAACCTGAGTGTCCGTATGGCACAGACTGCTACAGGTAGGATGCACACCACAGGATATAAGGGATTGGTAATCATGTCTCAAGACCATTTATTGTCAGTAATGGCAAACATCAGAAAAAAGTAGCCTAATAGCTCCTACAATTTCAACAGGAAAAGAGAATATAACCTATTATTATAGCCAGTTCTCCCCTGTAAGAGGTATTATGACCTCAATGGAACTTTCTGGATACaggaaggttaaataaaacagtAAGGCAGTAATCAGGACTCAGATGAcaggagagtgtctgagtggaCTCAATTTGTTGGCCTCCATTTTAACCTTGAGCAGTTGACATCGGCAACCAAAGTGCTTGAGCAACAGGAGAGGCTGACATTTTAGTCTCATTGGCATTTGGCAATACTAGTAGCCCTTTGTAGTAAATCAAGCAATTTTCCATGTTTTCTTTTCAGGAAAGGAATACAAACTGGAAGGAATACAAACACACCAAGAAGCGATAAAGCCGGTATCATACAACAACGATGATGATGAGTT

Function

NR:

description
PREDICTED: aprataxin and PNK-like factor isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035760.1 True 676 mRNA 0.42 2 24371624 24373364

Neighbor

gene id symbol gene type direction distance location
LOC110486021 LOC106585998 coding upstream 50387 24317048 ~ 24321237 (+)
LOC110486019 LOC106585964 coding upstream 71378 24261947 ~ 24300246 (+)
actr2a LOC106585927 coding upstream 161284 24190053 ~ 24210340 (+)
LOC110486014 LOC106585894 coding upstream 212671 24145212 ~ 24158953 (+)
LOC110486011 LOC106585850 coding upstream 305241 24049629 ~ 24066383 (+)
LOC110486025 LOC106586048 coding downstream 40156 24413520 ~ 24441284 (+)
esf1 LOC106564836 coding downstream 90968 24464332 ~ 24476087 (+)
LOC110486030 LOC106586106 coding downstream 111240 24484604 ~ 24522503 (+)
LOC110486033 LOC106564832 coding downstream 181581 24554945 ~ 24624188 (+)
LOC110486034 LOC106586144 coding downstream 333783 24707147 ~ 24719985 (+)
G1156294 NA non-coding upstream 1128 24370274 ~ 24370496 (+)
G1156292 NA non-coding upstream 3870 24367529 ~ 24367754 (+)
G1156286 NA non-coding upstream 16771 24354174 ~ 24354853 (+)
G1156276 NA non-coding upstream 57255 24314159 ~ 24314369 (+)
G1156273 NA non-coding upstream 61970 24309448 ~ 24309654 (+)
G1156296 NA non-coding downstream 1425 24374789 ~ 24375132 (+)
G1156299 NA non-coding downstream 5120 24378484 ~ 24378713 (+)
G1156301 NA non-coding downstream 6709 24380073 ~ 24380282 (+)
G1156314 NA non-coding downstream 27118 24400482 ~ 24400781 (+)
G1156334 NA non-coding downstream 28210 24401574 ~ 24402362 (+)
G1156247 NA other upstream 42661 24326783 ~ 24328963 (+)
G1156089 NA other upstream 367656 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 772621 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 799844 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1412273 22958932 ~ 22959351 (+)
G1157117 NA other downstream 390738 24764102 ~ 24764346 (+)
G1157292 NA other downstream 728176 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 1039745 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 1089563 25462927 ~ 25463458 (+)
G1157972 NA other downstream 1099758 25473122 ~ 25473978 (+)

Expression


Co-expression Network