LOC110486033 (LOC106564832)


Basic Information

Item Value
gene id LOC110486033
gene name LOC106564832
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24554945 ~ 24624188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557343.2
TTCATTCCGTTATTGTGCGCCCTGAGGTGTACGCCGCATCGGAACTGCTTTGACAAACTGTGTAGGCAAGCCTATTGGTTAAAACGAATACAAGTTCTGGGCATAGACGTATTTAAATATGGAGCTTCATCAACGAGGTTGGTTAGGATGGGCAACTATTTTTGCCATTGCGTTATCAGTGAACGGTTTGAGCAAACGCGACATGTTTGATTATGGAGAGCAAGCTGGAGACCAACTGTTGGAGCAAGGGACCGACCAAACTCAAAAACTTCTTTTGAATCAGTCAATGTTCTTCTTCGATGGCACATATGACACTGTTTATATCAACACCAATGGCTTTCTGTCAGTAGAAGAACCTCAGGTGGAGTCTGAGTACCTGGGAAAGATGCCTGCCAGCTTCAGAATGATAGCGGTTTTCCTCGGAGATCTGGACAACAGCGACGGAGTGGGGAAGGTGTACTACCGacaggacagcagaccctccATGCTTCTCCGGACCACTGACCACATCAACCAGGCATTCCCTCAGGACGATGAGATCAAGCCCACCCACGCCTTAATCATCACATGGGAGAACGTGGCCGCCCACGGCGTGCCTGGTCGAGGAGATGGGCTGGACAGAAAGAGAAACACGTTCCAGCTGGTGGTGGCGTCCATGGCGTCCGCCTCCTACGCCATCTTGTTCTACCCCAGGGAGGGGCTACAGTACATCTCCACGCCTGTGGCGGGCCAGAGCGAGCTAGTCCACACCGGCTTCATCAAGGGCCGGGTCAAGGGCTGGTTCAACTGGAGCAGCATCCCGGGGCCCTACTACCGCATTGCCACCGACAACGAGACGTCCGTCAGACAGCTCTCCGAGGAGACAAACTCAGGCAGGCgtggtgtgtgggtgtatgaGATCGGCACCTCCCCGATCTTCTACTCCATTATCCCAGGCCAGGTCACCAACCTGTCCCCAGAGGAGGGCATGGCAGGTGGGCAGATGGAGTCCGTGCCAGAGTTTCCACCCAGAAACACTGGAGAACAACAGGAGATTGAATTCCCTCCCTATGAgcacgaggaggaagaggagacaccTGAACAAGagctgcccccaactgtccaccCGGTGCAGTATCAGCCCAGATACCCTGTTGTCCCTGAGCCGCCCCAGCCCAGCTACTCTGAGCCGCCCCAGCCCAGCTACTCTGAGCCGCCCCAGCCCAGCTACTCTGAGCCGCCCCAGCCCAGCTACTCTGAGCCGACCCAGCCCAGCTACCCTGAGCCGACCCAGCCCAGCTACCCTGAGCCGACCCAGCCCAGCTACCTTGAGCCGGACCAGCCCAGCTACCCTGAGCCGGACCAGCCCAGCTACCCTGAGCCGGACCAGCCCAGATACCCTGAGCCGGACCAGCCCAGATACCCTGAGCCGGACCAGCCCAGATACCCTGAGCCGGACCAGCCCAGATACCCTGAGCCGGACCAGCCCAGATACCCTGAGCCGGTCCAGCCCAGTTACCTTGAGCCTGTCCAGTCGGCCCAGCCGCAGCCACCACGCTACGATCCTCAAACCCCACAGGTGGTGGTTGTGGATGAAGATGATGACCTTGATGTTGACGTGTTTGCGTACAATTCTGAGACATGCGCCAGTAACAGGCAGAAGTGCTCGTCCTTCGCTGACTGTAAGGACTACACCAATGGCTACTGCTGCCAATGTAGGCCTGGTTTCTATGGCAATGGCAAGGATTGTGTGGCTGAAGGTAAGCCCCAGCGGATGAACGGCAAAGTGAATGGCCGGGTGTTTGTGGGCAACACGCCCTCGCCGCTGGAGCTCTCCAACAACGACCTGCACTCGTACGTGGTGGCCAACGATGGGCGCGCCTACGTGGCCATCAGTACCATCCCGGCCGGCCTGGGACCCTCCCTGCAGCCCCTGTCTTCCCTGGGAGGGGTCATCGGCTGGGCCTTCGCTCTGGAGCAGCCCGGCTATGAGAACGGCTTCAGCATCATCGGTGGCGTGTTCTCCAGGCAGGCCGAGGTGACCTTCTTACCGGGCAACGAGAGGCTGACCATCAAGCAGGAGTTCAAGGGCATCGACGAGCACGACCACCTGGTGGTGAGCACCGAGCTGGAGGGCCGTCTCCCTGAGGTCCCACGCGGCTCCACTGTCCAGATCGACCCCTACAAGGAGATCTACCAGTATGGCAGCAACCtgatcacctcctcctccaaccgcGACTACACTGTGAGCCTACCGGATGGCAGTGTCCAGACCAAGGCCTACCAGTGGCGTCAGACCATCACCTACCAGAGCTGTCCCAATGACGAGGAGGTCAGGGCCGTGCAGTCTACCCAGCAGCTCAGCGTCGACCAGATCTTCGTCATGTACGACTCGGGCAACCAGCTGATCCGCTACGCTATGAGCAACAAGATCGGCTCCATCCACAGTGGCCCACCAGAGCAGAACCCATGTTTCACTGGCAGACACGGCTGCGACACCAACGCTGCCTGCAGACCCGGAGAAGGCGTCCAGTTCACCTGCGAGTGTTCCACTGGTTTCACTGGGGACGGACGTCAATGCTATGACATTGACGAGTGCAGAGAGATGCCCGAGATCTGTGGTTCTCACGCCTTATGCAACAACCAACCGGGAACATTCCGCTGCGAGTGTGTGGACGGTTTCCAGTTCGCCAGCGATGGCAAGACCTGCGTCGAAGTGGACCGTCCAATAGACCACTGCCAGAGGGGTACCAATAACTGCGACATCCCAGAGAGGGCACGTTGTAGCTACACGGGGGCGTCTGCCTATATCTGCTCCTGTCTGTCCGGATTCGTGGGTGATGGTTATACTTGCCGGGACATTGAAGAGTGTGAGCAAGGTCGCTGTCACCGGGACGCCGTCTGTTATAACTCTCAGGGCTCCTTCACCTGTCAGTGCCGCCCTGGTTTCCATGGTGACGGCTTCCAGTGTACTCCTGGCTCCCCGGAGCATGAGAAGACGCAgtgcgagcgagacagagaaagcaTCCAGGTCTCCTCCAACACAGGCTCGTTTTCCTTCTTCCGCCCACGCCCCGCCGTCAGTCAGTACGGTCCTACCTGCGACCAGCATGGTGCCTACGAGCCCACCCAGTGCCACGGTAGCATTGGGCAGTGCTGGTGTGTGGACGGCAATGGTCAGGAGATTCCCAACACTAGAACTGGCCCCGGCCAAAGACCTTTGTGTATTGACCGGGGAGTTATTCCTCCCCCGATCGGACCCACCACCAGGCCGGATGTCTCTCCTGTGGCCCCAGGGACCCACCTGCTCTTTGCCCAGAGCGGGAAGATCGAGCAAATCCCCCTGGACGGATACAGCATGAACAAAGGGGAGGCCAAAGCCCTGCTGCACCTGCCTGACAGAGTGGCGATCGCTGTGGCCTACGACTGTGTGGAGAAGACGGTGTACTGGACAGACATCACAGGGCCCTCCATCAGCAAGGCCAGCCTAGAGGGAGGAGACACCATCTCTCTTGTCACAACAGACCTGGAGAGCCCAGAGGGTTTGGCTATCGACCACCTGGCCCGGTTAATGTTCTGGACGGACTCCATGAAGGACAGGATTGAGGTGGCCAAACTGGACGGAAGCCAGCGCCGTGTTCTCTTTGACACCGACCTGGTCAACCCCCGGCCCATCGTCGCTGACCCCTCCTATGGACGACTCTACTGGGCAGACTGGAACAGAGACGGGCCCAAGATCGAGATGTCCAACATGGACGGAACCGACAGGACAGTCTTGGTTAAGGACGACCTGGGGCTGCCCAACGGCCTGACATACGACCCTGAGAGCCAGCAACTATGCTGGGCCGACGCTGgtaCTCGTAAGGTACAGTGTATGGACCCCAACAGTAGGAACCGTAGGACTATTGTGGAGGGGATTCAGTATCCTTTCGCCATCGTATCCCATGGGAGGAACCTTTACTACACTGACTGGAGAAGGGAGGCGGTGGTAGCCGTGGACCGCACAACGGACAGAGAGACGGACGAGTTTCTGCCACAGAAGCGTTCACGAGTGTACGGCATTGCCACGACCCCAACTCAATGCCCACAAGCATATAACTACTGCTCGAACAACGGAGGCTGTTCACACCTTTGTCTACCTCGCCGCGGCGGCTTCACCTGCCGGTGCCCAGACGTGGTGGACGGAAGCTGTGTAGAGAGGAAATTGTGAGGACTGAAGAGAGATCAGTAGATTCTCCTGCTAACTGCACAAAAGGAGTTGTGACACGTGTGCCTTCCAACTTCCTCTTTAGAGGAAGAAAGATAAGCTGCATCCGGCTGCCTGTTGCTCTGTGGCCCAAATCCATTCAGATCGCTAGGCCTCTATTGCTCAGTTCCTTGTTGAGTTCCCTCTGgcagatctgagaggattgggcAGTTTGTAAGGATATGATAGGGATCTCTACTGTAGTTCTCTGGTTGGTTAGGTGGAGTTGCTATCCTATTGCTTCCACCTATCTAGTCATTTGACGTTGTTACTGTGTGTATTTGAAACCTCACAAATTATTTTGGCATTATTTTCTGATCCATTTGATAAAAAGTcacattgtatttttttgtattgtaAATAAATACctgaaatatacagttgaagtcagaagtttacatacaccttagccaa

Function

NR:

description
nidogen-1-like

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557343.2 True 4639 mRNA 0.57 20 24554945 24624188

Neighbor

gene id symbol gene type direction distance location
LOC110486030 LOC106586106 coding upstream 32442 24484604 ~ 24522503 (+)
esf1 LOC106564836 coding upstream 78858 24464332 ~ 24476087 (+)
LOC110486025 LOC106586048 coding upstream 113661 24413520 ~ 24441284 (+)
LOC118938548 NA coding upstream 181581 24371624 ~ 24373364 (+)
LOC110486021 LOC106585998 coding upstream 233708 24317048 ~ 24321237 (+)
LOC110486034 LOC106586144 coding downstream 82959 24707147 ~ 24719985 (+)
LOC110486038 LOC106586164 coding downstream 279863 24904051 ~ 24996436 (+)
LOC110486039 LOC106586175 coding downstream 423653 25047841 ~ 25065592 (+)
iip iip coding downstream 447364 25071552 ~ 25072676 (+)
LOC110486040 ifm3 coding downstream 466377 25090565 ~ 25091740 (+)
G1156377 NA non-coding upstream 10528 24543595 ~ 24544417 (+)
G1156339 NA non-coding upstream 62905 24419718 ~ 24492040 (+)
G1156334 NA non-coding upstream 152583 24401574 ~ 24402362 (+)
G1156314 NA non-coding upstream 154164 24400482 ~ 24400781 (+)
G1156301 NA non-coding upstream 174663 24380073 ~ 24380282 (+)
G1156385 LOC100135918 non-coding downstream 1918 24626106 ~ 24655031 (+)
G1156386 LOC100135918 non-coding downstream 30887 24655075 ~ 24658914 (+)
G1156384 NA non-coding downstream 38939 24663127 ~ 24669484 (+)
G1156424 NA non-coding downstream 56391 24680579 ~ 24680927 (+)
G1156426 NA non-coding downstream 58667 24682855 ~ 24683067 (+)
G1156247 NA other upstream 225982 24326783 ~ 24328963 (+)
G1156089 NA other upstream 550977 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 955942 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 983165 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1595594 22958932 ~ 22959351 (+)
G1157117 NA other downstream 139914 24764102 ~ 24764346 (+)
G1157292 NA other downstream 477352 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 788921 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 838739 25462927 ~ 25463458 (+)
G1157972 NA other downstream 848934 25473122 ~ 25473978 (+)

Expression


Co-expression Network