LOC110486034 (LOC106586144)


Basic Information

Item Value
gene id LOC110486034
gene name LOC106586144
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 24707147 ~ 24719985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940684.1
TATACCTATATATGTGCAATGAAAAAGAATGAGCAGGTAAAGCCTTCTGTACTTACTTGTTCTACTTTGACAGTGCTATTTAAGAAAGCATTAGgtaataacgttagctagctaaaatactTGCGGTCATGTCAACTCCCAAGAAACTGCAATGTTGTTTGGCTTTATTTGATTGGCTACTATAGTGAGATTAGCTACAACAAACATCTTCACTGCCAATGAAACACGAGGACCACGTGTCCACAGAATGTATATGTTATTTCTAAATATGTGTTTGAAAGTTACCTTAATCAGAAAGTTGTTGTCATATTTCGCAGTAGCATAAATAATCACAGCTCACAAACCCCGACTGGAAGTAACTGAATATGATGATGCACACGTTTGCCGTACAAGTTTGATAGATTATTAATGATTAAGTTATCGGCAATAAAACGTTATTTTAGTGTCATTATTTAAATATCCATCATCGTTATAATCAGGTAACAATCAATGCATCTATATATAGATCACTGGATGACAGCCCACCCATATGTAACAGCTAGGAACATTTACAATTGCGTTGTGCATGGTAGGACATAATTAGGTGAAGGACAGGTCTTCATGGAGTAAAACGTGAGTAAATATATACATTTCTTTTGGCATCAACACATAGTTCTAATGAGATGTTTTCATTATAACTTCACGTACAAATTATTTGATGAATTATTTCCATGATAAAAGCACGTTTTTATAAGATTGTCTCATCATTCAAAGCAGCTGGAATCGACCATCGAGAACATTGACGTGAACTGACCATGAAAAATACACTTTCTGGAGAGAGTGAGGAGGTTCCATCTGTGGACAAACAGTCCTTGGGCTATGTAGTGGGATCAGTATCAGGCAGCTTGTTTCCAAAGGAGTCTACATCCAGCTCCGGATCGTTATCTGCATTGTTCCAAGCTGCGCCAGTAGTTGACACTCTGTTCTTTGTTCCTGCTCCTAAGCCTGAACCGAGGAGCGTGGAGTTGAAGGAAGGCGCGGCCACAAAAGTCCCGAACAACCAGAAACAAACAAAGAAAGCCGCAAAGGACAAATCAGCTGCAGACTTATGTCTAGAAAACAGAGAAAGTGCATTACAAAATGCTGACGAAGACGAACAGGTCCCAAAGATGCCCAAGAAGACTAAAAGGAAagctgttgagatgggagaagggggtgcgacagaggaggaggagaggcagacaaaaaaacagaggacTGGAGCCCAAATTGCAGAGGAGAGGGTAAAGCAGAAACGAACAGTGTTTGTCGGCAACCTCTCTTCCAGCTGCACAAAGAAGACACTACAGCTTGTCTTCAAGGATCAGGGAGCCATTGAAAGCATTCGATTTCGATCAGTGGTAAGAGAAGATCCATCTGTGTCACGCAAAGTAGCAGCTATTCAACGCAAGGTTCACCCCAAGAAGCAGAGCATCAATGCCTACGTGGTTTTCGAAGCTGAGGAAGGAGCCGAGAAGGCATTGGAAAGGAACGGCATGGAGATTGAGAAAAACTTTCACATCCGGGTCGACAGGGTCTCCAAAAGTTCATTGCACGATCACAAGAGGTCAATATTCATTGGCAATCTACCATTCGATATAAACGAATTGCCAGTGCGACAGCACTTTGAGGAGTGTGGCAAGGTGGAGGGGGTGCGGCTGGTGCGGGACAAGAACTCTGGAATGGGCAAGGGCTTCGGCTACATCTTATTCCAGAGCATCGATGCTGTCCAGCTGGCCTTGAAACTAGACGGCTTAAAACTCCTCGGGAGGTCGGTCCGGGTGAAGAGGTCAGtgaagaaggagaaagagaagaagaatgtGGTTTcccagagggaaagagagattaaGGGTGCAGGGAAGGAGCCTACCAAAGGGGGATTTAAGGAGAGACCGGGCCAGGGCGGTCCCCAAAACAAGTCTTCCGGGAGGCCGCAGGGGAAGGGGCCTCAAATCAAATCGATGGGGAAGCCATTCAAGAAAAGTCTAGGTGAGGCAACGAAAGCCCCCACAGGCCCCTCTTCCTTCAAAAGGTGAGATGGCCGACCCAAACAGAAAAAAAGCAAAGGCGAAAGCACTGAAGAAGAAACTCAAACCGAGGAAAAGGAATCAGGTCGTACACATTTGATGGTCTGTGCTTTGTGCCTTTGGATGTAAATTAATTTGATATTGTTAAAGCAGATAAAATGTGTTGTACAATTTACATGTCAGTGGAGCTATATCATGAGATGGTGTGTAAGCGTTCCTGACGTAACATCCATGCCTACCCACATTTCCAGTTGAAACGGTTGTTTTTTTTAGGTTGGGGCTATCGCACCCAATGTATGTAAATAttaacatgtacagttgaagtcggaagtttacatcaacttagtttggagtcattaactagtttttcaaccactccactaatttcttgttaacaaactatagttttggcaagtcggttagaacatcacttttacacaagtaatttttcca
>TU1318728
tttccagcaattgtttagagattatttcactgtatcacaattccagtgggcctgaagtttacatacactaagttgactgtacctttaaacagcttggaaaattccagaagattgtgtggctttagaagcttctgatcatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcggtgcctctttgcttgacatcatgggaaaatcaaaagaaaatcagccaagacctcaaaaaaaattgtagacctccacgagtctggttcatccttgggagtaatttccaaacacttgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacacagccgtcataccactcaggaaggagacgcgttcggtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacaaaagaccttgaagatgctggaggaagcaagTACAGTAAaagtcctttatcgacataacctgaaaggcccctcagcaaggaagaaggcacttctccaaaaccgccataaaaaaagccagactatggtttgcaactgcacatggggacaaagattgtactttttggagaaatgtcctctggtctaatacaactgtttggccataatgaccatcgttatgtttggaggaaaaagtgggaggcttgcaagcctaagaacctcatcccaaccgtgaagcacaggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatagcatcatgaggaggaaaaatatgtggatatattgaagcaacatcaagacatcagttaaatcttggtcgcaaatgggtcttccatatggacaatgaccctaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaagatttgtgggcagaactgaaaaggcatgtgcgagcaaggaggcctacaaatctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattttgggaagcctGTTGAAAAGCTACCTctaacatttgacccaagtttaaattgtttaaggcaatgctaccaaattctaattgagtgtatgtaaacttctgacccactaggaatgttatgaaagaaataagactattctgacatttcacattcttaaaataaagtggtgatcctaactgactaagacagggaatttttactaaagattaaaatgtcaggaattgtgaaaaacagtttaaatgtatttggctacggtatgtaaacttccaactgtacGTCTATGGTCCCACCTAATGGTAGGGAAAACATTCATTAACTATTCTGGACATTAACATCTGAG

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940684.1 False 2498 mRNA 0.43 12 24707147 24718537
TU1318728 True 1454 lncRNA 0.41 1 24718532 24719985

Neighbor

gene id symbol gene type direction distance location
LOC110486033 LOC106564832 coding upstream 82959 24554945 ~ 24624188 (+)
LOC110486030 LOC106586106 coding upstream 184644 24484604 ~ 24522503 (+)
esf1 LOC106564836 coding upstream 231060 24464332 ~ 24476087 (+)
LOC110486025 LOC106586048 coding upstream 265863 24413520 ~ 24441284 (+)
LOC118938548 NA coding upstream 333783 24371624 ~ 24373364 (+)
LOC110486038 LOC106586164 coding downstream 185514 24904051 ~ 24996436 (+)
LOC110486039 LOC106586175 coding downstream 329304 25047841 ~ 25065592 (+)
iip iip coding downstream 353015 25071552 ~ 25072676 (+)
LOC110486040 ifm3 coding downstream 372028 25090565 ~ 25091740 (+)
LOC118938245 NA coding downstream 375008 25093545 ~ 25104730 (+)
G1156439 NA non-coding upstream 3038 24703591 ~ 24704109 (+)
G1156438 NA non-coding upstream 7198 24699568 ~ 24699949 (+)
G1156437 NA non-coding upstream 7744 24698593 ~ 24699403 (+)
G1156436 NA non-coding upstream 8661 24697565 ~ 24698486 (+)
G1156431 LOC106581707 non-coding upstream 17077 24689836 ~ 24690070 (+)
G1156446 NA non-coding downstream 9326 24727863 ~ 24728065 (+)
G1156448 NA non-coding downstream 12026 24730563 ~ 24730780 (+)
G1156453 NA non-coding downstream 15384 24733921 ~ 24734132 (+)
G1157104 NA non-coding downstream 29007 24747544 ~ 24747781 (+)
G1157121 NA non-coding downstream 49035 24767572 ~ 24767798 (+)
G1156247 NA other upstream 378184 24326783 ~ 24328963 (+)
G1156089 NA other upstream 703179 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1108144 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 1135367 23511706 ~ 23591433 (+)
G1155006 LOC100136012 other upstream 1747796 22958932 ~ 22959351 (+)
G1157117 NA other downstream 45565 24764102 ~ 24764346 (+)
G1157292 NA other downstream 383003 25082584 ~ 25105138 (+)
LOC110486053 polr3f other downstream 694572 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 744390 25462927 ~ 25463458 (+)
G1157972 NA other downstream 754585 25473122 ~ 25473978 (+)
G1156443 NA non-coding upstream 4851 24713364 ~ 24713681 (+)
G1156442 NA non-coding upstream 5250 24713032 ~ 24713282 (+)

Expression


Co-expression Network