LOC110486039 (LOC106586175)


Basic Information

Item Value
gene id LOC110486039
gene name LOC106586175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25047841 ~ 25065592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557350.2
ATTTGCCCCGAAAGTAGCTCAGATGTGATCCAGCAGCCAATAGGAGTCGGGGAGAAAGCAGTAGGACTTTAATCGTACCGGGGTTAAATAGCACTCCGAAATATCGTTCCCCCCAAGCAGTTGTGGTTTAAACTTTTTCATTTAAGATGGACGAGGATAGAGGGAAAGCAAACGATCAAATGAAGTTATGGAAAGAGGGCCAAAGCGTTAAGAGGCCAGACAACCTGACCACTGGGGCTGGTCACCCGATAGGGGACAAGCTGAATATAATAACAGCGGGTCCCCGGGGGCCCCTCCTAGTGCAGGACACCCCGTTCATAGACGAGATGGCCCACTTCGACCGCGAGCGCATCCCAGAGAGGGTGGTACACGCCAAGGGAGGCGGAGCTTTTGGGTACTTTGAGGTGACACATGACATCTCTCGCTACTGCAAGGCCAAGGTGTTTGAGCATGTGGGCAAGACCACGCCTGTGGCCATTCGCTTCTCCACCGTGGCTGGGGAATCGGGCTCAGCAGACACAGTGAGAGACCCACGTGGCTTTGCAGTCAAGTTCTACACTGACGAGGGCAACTGGGACCTTACTGGCAACAACACCCCCATATTCTTTATCAGGGATGCAATGCTGTTCCCATCATTCATCCACTCTCAGAAGCGCAACCCCCAGACTCACCTGAAGGACCCAGACATGGTGTGGGACTTCTGGAGCCTGCGGCCTGAGTGTATGCATCAGGTGTCCTTCCTGTTCAGTGACCGTGGTCTGCCCGACGGCTTCCGCCACATGAACGGCTACGGATCCCACACCTTCAAGCTGGTGAACGCCGACAGTCAGCCCGTCTACTGCAAGTTCCACTACAAGACCAACCAGGGTATCAAGAACATGAAACCTGAGGACGCCGAGCGCCTGGCCTCCACCGACCCGGACTATGCCATTCGAGACCTTTACACCTCCATCGCCAACGGCAAATTCCCTTCCTGGTCATTCTACATCCAGGTCATGACCTTTGACCAGGCCGAGAAGTTCCAGTGGAACCCCTTTGACCTGACCAAGGTGTGGTCTCACAAGGAGTACCCCCTCATTCCGGTGGGGAGGTTGGTGCTCAACAGAAACCCTGCCAACTACTTTGCTGAGATCGAGCAACTGGCCTTTGACCCCAGCAATATGCCCCCTGGCATCGAGCCCAGCCCCGACAAGATGCTGCAGGGGCGTCTGTTCTCCTACCCAGACACACACCGCCACCGGCTGGGAACCAACTACCTGCAGCTGCCCGTCAACTGCCCCTTCAGGACCCGTGTGGCCAACTACCAGCGAGACGGGCCCATGTGCATGTTCGACAACCAGGCTGGCGCTCCCAACTACTTCCCCAACAGCTTCAGTGCTCCAGAGACCCAGCAACAGCACGTGGAGACCAGGTTTAAGGTGTCCCCAGATGTGGGCCGCTACAACAGCGCTGACGACGATGATGTCACACAGGTGCGTACCTTCTTCACTGAGGTGCTGAATGAGGAGGAGCGCCAGAGGCTCTGTCAGAACATGGCTGGGGCCCTGAAGGGGGCCCAAGTCTTCATCCAGAAACGCTGGATTCAGAACCTGATGGCTGTGCATGCAGACTATGGAAACGGGGTTCAGGCCCTACTCAACAACACTGAGCCCACGAAGGACACTGTGAGAGTGTACACTCGTGGCGGTGCCTCTGCCGTCGCTGCCTCCTCCAAGATGTGATGCCTTAACTTCCACCTGGGGGCAGTTCTACCTGTTGCACTTACCATCCGCTATAGAAGATCTTACTACAGGCCGTCAGTAAATACTATAGCTAATTAAATGGCAAACTGTCATGATTGTTTTTGTAATTCCTCAGGCTACCTGCTGCACAGATGACGAGAGACAGCATTGCTGTCCGTTCTTACATGTAATTTCCTGTCCATTTTTCCTAAGTTCACACAGCCCTATGGGAGCAGATCTGTCCCCAAATCAGTCAAATACACTGGCGCTATCTGAAAAGCCATGCCTTTATTCAGTTGCTTATAGTATAGTTTTCATTCCATTGTCAGTATAGTGTTTCATCCTTTTTCCCAATGACTTATTGTTTGTGTATCCAGGCCTCATGTATGCCCTGATAGTTAGCTTAATAAACAGGTATGCTTTAGCTAGCCTATATGCAAAATATGCACGAAATATGGCATTTAAACAAACCACCGTTTTCAAATAAGATTCATAATTATTTTATAGTATATTTAGCTGTTTTAAACTTCTGAGTTCTCTTAACATTTTTCAGTACTTATGCCTACATCATATTTCTTGGTTATATCAGAAATGGTTTCAGGCCATCGATTTAGTGCGATTCACTAAATGTTTTCTGTAGATACTCTGTACCAGAATGAATCACTGAAGAGATGTTTGAGTTGGGGCTGGAGAATTAACAACCACCACTGTTTCCTGGGAAGGAAACTTAGTCGTTATATCTTCTCGCAAGCCTCCAGACTCACTTGCTATTTTGCGCCTTATCGCTGTTAATGTTTCTATGTTAGGTAGCATTCCCACTCATATCGCCTGTCTGAAGAGAAGTGATTTGTTATATGAATGTAAAATGTTGAACTTTTTTTTAACTACAAAATGAGATTGTAATAAATCAAAAGGTAATGCTGTTTGTCTGGTTTAAAGCAGGCTGATCTTATACTCCAGGGTATGCAGGCTTTTGATACAGCCCAGGACTACACCTGATTCTACATATCGAACCCTTCATTAGTTGAGGTGTGTTACTGGGCTGGagtaaaagcctgcacaccctgtTGGTCTCTCAGACCAGGATTGAATACATTGAGCATGTTTATGGGGTTGTCATCTATGATGCAGTTCAAACTGTGAATGGTGGTTTGGCCTTTGGAGTGCCCAGCATTTCAACAAGTCATTCAGCTCCATTAGAAGATTTACATATGCAAACAGACACGGGAGAGTGGCTAAGACTAAAGTAAGCATACCAGACACTCAACAGACAGAGTTAAGGGTAAACACTTTGACAATGACTGATTTCAACTGTACAAAACACTCAAGCCAGGTTCACACTTAGTTCTCATCAATACATTGAACTGTATGCCTAAATTGTCTGAATAGTAAGTAGGTAGCAGCATTTTCTTCAGTGTAACCAGTTGATAATATTTTATAGGTAATGTGGGGGAATGAGTTGGCTTTGTTGTATATTTCCCCCACCTTTCTTTATAATGTATTTGGT

Function

NR:

description
catalase-like

GO: NA

KEGG:

id description
K03781 katE, CAT, catB, srpA; catalase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557350.2 True 3228 mRNA 0.48 11 25047841 25065592

Neighbor

gene id symbol gene type direction distance location
LOC110486038 LOC106586164 coding upstream 51405 24904051 ~ 24996436 (+)
LOC110486034 LOC106586144 coding upstream 329304 24707147 ~ 24719985 (+)
LOC110486033 LOC106564832 coding upstream 423653 24554945 ~ 24624188 (+)
LOC110486030 LOC106586106 coding upstream 525338 24484604 ~ 24522503 (+)
esf1 LOC106564836 coding upstream 571754 24464332 ~ 24476087 (+)
iip iip coding downstream 5960 25071552 ~ 25072676 (+)
LOC110486040 ifm3 coding downstream 24973 25090565 ~ 25091740 (+)
LOC118938245 NA coding downstream 27953 25093545 ~ 25104730 (+)
ifm3 ifm3 coding downstream 35932 25101524 ~ 25102652 (+)
LOC110486044 LOC106586224 coding downstream 75607 25141199 ~ 25143963 (+)
G1157286 NA non-coding upstream 21376 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 24007 25023473 ~ 25023834 (+)
G1157282 NA non-coding upstream 26179 25021366 ~ 25021662 (+)
G1157266 NA non-coding upstream 50370 24997259 ~ 24997471 (+)
G1157172 NA non-coding upstream 213513 24833957 ~ 24834328 (+)
G1157309 NA non-coding downstream 5050 25070642 ~ 25071023 (+)
G1157292 NA non-coding downstream 16992 25082584 ~ 25105138 (+)
G1157617 NA non-coding downstream 126766 25192358 ~ 25192584 (+)
G1157643 NA non-coding downstream 130753 25196345 ~ 25196646 (+)
G1157653 NA non-coding downstream 140871 25206463 ~ 25206703 (+)
G1157117 NA other upstream 283495 24764102 ~ 24764346 (+)
G1156247 NA other upstream 718878 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1043873 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1448838 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 1476061 23511706 ~ 23591433 (+)
LOC110486053 polr3f other downstream 347517 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 397335 25462927 ~ 25463458 (+)
G1157972 NA other downstream 407530 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 791040 25813029 ~ 25872772 (+)

Expression


Co-expression Network