LOC118938245


Basic Information

Item Value
gene id LOC118938245
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25093545 ~ 25104730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035506.1
tcaagggggccgaatactttcgcaaggcactgtacatatcctGACATGGCTTGTCTTTGTTGTCGCTCTCCAACCAAGTTTAAGCCACAATCTGTACTATTTATGGTTGGTAAGATGACTTGTCCTTGTGTGATATAAAGATGTAGGAATTAGAGTATGTTGAACAACTTTATCAACCCCAAGAATGAACAGTATTAGGTGTTTTTGACCTATTACTCTGATTCAACATCTGTTAATAATTTGTTAAAGTGGAATTTCCAGCAGTGTTGAAAGTCCAGGCCTGGTTTCCGGAGACAAGCTATGTCACCAGGAATCCCTGGCTGGCTGTGTACTGTGGTACTCTTGAATATCTATTTTCCCTCTGGAGAAATATGCTGTGTAGGTttgatgggtaaaaaaaacactATTCAATTCATGGCCCTGTTAAAATACTTACATTTATCATTCAGCAGGGCTTGTAACAAGGATGCAAATTTATAGGGATTCACACAGGTTTCCTCTTGTCAGTATAGTTCTTGAAGGAAAGCAGATCAGTAGAGTGAATTGAACTAGATCAGATGATTGGGACAAAGCTAAAAATAAATAGTGTGAGCTGGGGGCCATTTTCAGGCTCCTTGCAAAGCtcgatagcctgcagagttctgggCCCTTTCGGGGCTAAAAGGAGGAGGAGACTATGGCTTAATGTTTttatgccaagagtgtgccaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaatataaaatatatttagagttGTTTCAAAGGATCGGGTtccttttttaaaactttttctcTTATGTAATATGATatatccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcatattcttataCTTTTATttagtaccatttgaaagaaaataatTTCTAGCTGCCATCCATATGTTtccactgtgctgtgatgtttcaaaAACCTTTATAATCTCAGAGTATTATATGATTGATTGACTTTTCCAATCAcacagcagtgctatttgcagagttagctgcaagtaaatgttgcaatttttcTGCCTTTCCTGtgcctgcgaccaaaaacaagctgcATATGGGCATTACCAcaagtgatctaatgattctATCTCTTCGAAGCACAAtgtgcagagctgggatggttgtatcccccatctataacattctattagttgcaagaattttgtataataatttaaatagaaAAACTCAACATTTTGAATCTGTCAtcattttgtgtatcagttcataaaccatgtgccatggaattggtacattgaaaatctcctcccaactattttgcaacctTTATGGTGCAGCTGtgaattttttggtccttaaattaaacaggtatactttattatttataaaaaaaatgtgtttagccTATTTTGCTCTTTAATGCTGGGCCGACAAACACATTCCTTACCTTCTCCAcgttccacttgcctcctccgtgtttgcggtaatgctgcaaaCAGTTCGTTGTCattttggatagagcagacatttccacaTTTCCCTACAAACTATGGGTATTGATCATATTCCGGCCTCTAATAGAAAAGGGGGCCCATCTTAAACAGTTAAACCATGGGGAAAGTTttgggatttacaaactacaggccactaaataccctggtttaaatgaagatatggatttctcaCCCTTCCTGTAGGGTCGTGATGGATCCATTTGCTGTCATCTTGTGGACATTTTGCTCAATTGGCCTCAGCTATGGTTagactgttgttgttcatgttttgctgtgttctagtgtactatggaatatatagctttcttattcttgacacttctcccagtcatatttaaggttagaactaccttttagtgttctgatacttctagtttggagttgtatttttatgataacatagctacagtatttcaccttttaatgtgtatagtattgcttactaggtgtgtccaatcaattgtgtaaccactccctcttccaatTAGGGCTAATTGAAAAACTTAAAAAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035506.1 True 2035 mRNA 0.38 2 25093545 25104730

Neighbor

gene id symbol gene type direction distance location
LOC110486040 ifm3 coding upstream 1805 25090565 ~ 25091740 (+)
iip iip coding upstream 20869 25071552 ~ 25072676 (+)
LOC110486039 LOC106586175 coding upstream 27953 25047841 ~ 25065592 (+)
LOC110486038 LOC106586164 coding upstream 97109 24904051 ~ 24996436 (+)
LOC110486034 LOC106586144 coding upstream 375008 24707147 ~ 24719985 (+)
LOC110486044 LOC106586224 coding downstream 36469 25141199 ~ 25143963 (+)
LOC110486045 s5a2 coding downstream 63435 25168165 ~ 25188384 (+)
LOC110486047 tmem63b coding downstream 115806 25220536 ~ 25319211 (+)
LOC110486051 LOC106584925 coding downstream 258099 25362829 ~ 25376936 (+)
LOC118938060 NA coding downstream 285766 25390496 ~ 25392938 (+)
G1157292 NA non-coding upstream 7135 25082584 ~ 25105138 (+)
G1157309 NA non-coding upstream 22522 25070642 ~ 25071023 (+)
G1157286 NA non-coding upstream 67080 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 69711 25023473 ~ 25023834 (+)
G1157282 NA non-coding upstream 71883 25021366 ~ 25021662 (+)
G1157617 NA non-coding downstream 87628 25192358 ~ 25192584 (+)
G1157643 NA non-coding downstream 91615 25196345 ~ 25196646 (+)
G1157653 NA non-coding downstream 101733 25206463 ~ 25206703 (+)
G1157667 NA non-coding downstream 217497 25322227 ~ 25322831 (+)
G1157117 NA other upstream 329199 24764102 ~ 24764346 (+)
G1156247 NA other upstream 764582 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1089577 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1494542 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 1521765 23511706 ~ 23591433 (+)
LOC110486053 polr3f other downstream 308379 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 358197 25462927 ~ 25463458 (+)
G1157972 NA other downstream 368392 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 751902 25813029 ~ 25872772 (+)
G1158563 NA other downstream 1005766 26110496 ~ 26115864 (+)

Expression


Co-expression Network