ifm3 (ifm3)


Basic Information

Item Value
gene id ifm3
gene name ifm3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25101524 ~ 25102652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165249.1
ACATCTCTTTGGGTCTAAATTTCTCGTTTGCACTAGAGCTTTGATTATTTTTTTAACACGAGGCTAAATAAGTAGCAATATTCGCTTGCCATGGATCAACCACCACCGTACCAGCCAGAGTTTGTCCCAATGAAAGGAAATAAGTACATGCGTCTTGAAGACACTCACGGAGCGCCCAAGTTCCAACATACCGTCGTCTTGGGACAGCCACAGCCCGTTGTACCTCATCCCAGGGATCACATTATCTGGTCACTTTGCAGCCTCGTGTACTGCAACCCATTCTGTCTCGGAATGTTAGCGGTGTATTTCTCCATAAAGTCGAGGGATAGGAAGATGGTTGGAGACTTGGAGGGAGCAAGAAAACACGGGAAGACTGCATGCTGCTTTAATACTGTGACTCTGACTTTGGCAATCCTCGGGCTGCTCTTCTTCATCACCTATGGTATCATCATCTACCAAGTTGCACACTGAGGAGATCCAGTCTTTgcttttgtaattttttttaaatttgaagTCTTGGCAGGTGTTATACATCTCTAGGATTGTGTCCTGATACATTTCAGCTCATCTCTTTAATACACACACGCCACAGATGTTCCTTCAGCACTGTGTACCAGATCTTATTTGCTCTTCTTTAGTTTTGTGTTTTAAGGACGCAAGATGATTTTTTTTAAGTTCCattcaaatgtaatttttttatGAATAAATTAAACCTTTTTGT

Function

NR:

description
Interferon-induced transmembrane protein 3

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165249.1 True 721 mRNA 0.42 2 25101524 25102652

Neighbor

gene id symbol gene type direction distance location
LOC110486040 ifm3 coding upstream 9784 25090565 ~ 25091740 (+)
iip iip coding upstream 28848 25071552 ~ 25072676 (+)
LOC110486039 LOC106586175 coding upstream 35932 25047841 ~ 25065592 (+)
LOC110486038 LOC106586164 coding upstream 105088 24904051 ~ 24996436 (+)
LOC110486034 LOC106586144 coding upstream 382987 24707147 ~ 24719985 (+)
LOC110486044 LOC106586224 coding downstream 38547 25141199 ~ 25143963 (+)
LOC110486045 s5a2 coding downstream 65513 25168165 ~ 25188384 (+)
LOC110486047 tmem63b coding downstream 117884 25220536 ~ 25319211 (+)
LOC110486051 LOC106584925 coding downstream 260177 25362829 ~ 25376936 (+)
LOC118938060 NA coding downstream 287844 25390496 ~ 25392938 (+)
G1157292 NA non-coding upstream 15114 25082584 ~ 25105138 (+)
G1157309 NA non-coding upstream 30501 25070642 ~ 25071023 (+)
G1157286 NA non-coding upstream 75059 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 77690 25023473 ~ 25023834 (+)
G1157282 NA non-coding upstream 79862 25021366 ~ 25021662 (+)
G1157617 NA non-coding downstream 89706 25192358 ~ 25192584 (+)
G1157643 NA non-coding downstream 93693 25196345 ~ 25196646 (+)
G1157653 NA non-coding downstream 103811 25206463 ~ 25206703 (+)
G1157667 NA non-coding downstream 219575 25322227 ~ 25322831 (+)
G1157117 NA other upstream 337178 24764102 ~ 24764346 (+)
G1156247 NA other upstream 772561 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1097556 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1502521 23595876 ~ 23608606 (+)
pitpnc1a LOC106585713 other upstream 1529744 23511706 ~ 23591433 (+)
LOC110486053 polr3f other downstream 310457 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 360275 25462927 ~ 25463458 (+)
G1157972 NA other downstream 370470 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 753980 25813029 ~ 25872772 (+)
G1158563 NA other downstream 1007844 26110496 ~ 26115864 (+)

Expression


Co-expression Network