LOC110486044 (LOC106586224)


Basic Information

Item Value
gene id LOC110486044
gene name LOC106586224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25141199 ~ 25143963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557359.2
GTAGTACACACTTCGTTTATGCAGTGACACCTGGACGCAGATGTCCCCTCCGTCGGGCGGGGACCCTGCAGGGCCTCGCTTCTTTCTGCTGCTTCTTCCTTCCGGAAAACTCATTCACCCGACGACTTGCTATCGTATCCATTACATTACATAGCCTTTTGCTTGGGTTCAACTTTTGAAGCGTCTATAGTTGCCATATATTCTCCGACATTCAAATGTTGATAAAATTGGACGGGGCGGTTACCAAACGAACAAAAGGGTAAGAGAGGAGGGGCACGCGCCCTCTTGTCCTATCAGAGAAAGTACGTAACTGCAAACAAGAGTTTACGTAGAGACCACCCACATTGCGTAAATACTAACAACAAACATGGCGGACGATCACACAGACGCAGACCAATCTATGGAGGGGAACACTCCAATTGCTGAAAACCCCCATTCTGAATATGGACTGACAGAAAACATCCAGAGAATAGTGGAAAATGAGAAAGCCAACACAGAGAAGGTCTCCAAACAGAAGGTGGATCTGCAGTCGCTCCCCACCAGGGCATATTTGGATCAGACAGTGGTGCCCATTCTTCTTCAAGGCTTATCTGTGTTGGCCAAGGAAAGACCTACAAATCCTATTGAATTCTTAGCAGCCTTCCTTCTCAAGAACAAATCACAGTTTGAAAATCGAAATTAAGCCCCAGACGGATGGAAATGTGCACTTTGAGGCCACATGTTTAAAATGAAGAAAATTGTTGTTTCTGTCAATGGTTATGTTTGCTAATGATAGtgtatgttgtttttttaaaccagaataaagattGTGCTGCAGGGAAA
>XM_036940688.1
GCGGACGGTAAGTGAAATGTTCGTTTATCGGCACCTTTATCACACAGACGCAGACCAATCTATGGAGGGGAACACTCCAATTGCTGAAAACCCCCATTCTGAATATGGACTGACAGAAAACATCCAGAGAATAGTGGAAAATGAGAAAGCCAACACAGAGAAGGTCTCCAAACAGAAGGTGGATCTGCAGTCGCTCCCCACCAGGGCATATTTGGATCAGACAGTGGTGCCCATTCTTCTTCAAGGCTTATCTGTGTTGGCCAAGGAAAGACCTACAAATCCTATTGAATTCTTAGCAGCCTTCCTTCTCAAGAACAAATCACAGTTTGAAAATCGAAATTAAGCCCCAGACGGATGGAAATGTGCACTTTGAGGCCACATGTTTAAAATGAAGAAAATTGTTGTTTCTGTCAATGGTTATGTTTGCTAATGATAGtgtatgttgtttttttaaaccagaataaagattGTGCTGCAGGGAAA

Function

NR:

description
protein dpy-30 homolog isoform X1

GO: NA

KEGG:

id description
K14965 DPY30; protein dpy-30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557359.2 False 822 mRNA 0.45 5 25141199 25143963
XM_036940688.1 True 483 mRNA 0.42 5 25141569 25143963

Neighbor

gene id symbol gene type direction distance location
LOC118938245 NA coding upstream 36469 25093545 ~ 25104730 (+)
ifm3 ifm3 coding upstream 38547 25101524 ~ 25102652 (+)
LOC110486040 ifm3 coding upstream 49459 25090565 ~ 25091740 (+)
iip iip coding upstream 68523 25071552 ~ 25072676 (+)
LOC110486039 LOC106586175 coding upstream 75607 25047841 ~ 25065592 (+)
LOC110486045 s5a2 coding downstream 24202 25168165 ~ 25188384 (+)
LOC110486047 tmem63b coding downstream 76573 25220536 ~ 25319211 (+)
LOC110486051 LOC106584925 coding downstream 218866 25362829 ~ 25376936 (+)
LOC118938060 NA coding downstream 246533 25390496 ~ 25392938 (+)
LOC110486052 LOC106584902 coding downstream 252168 25396131 ~ 25404252 (+)
G1157292 NA non-coding upstream 54789 25082584 ~ 25105138 (+)
G1157309 NA non-coding upstream 70176 25070642 ~ 25071023 (+)
G1157286 NA non-coding upstream 114734 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 117365 25023473 ~ 25023834 (+)
G1157282 NA non-coding upstream 119537 25021366 ~ 25021662 (+)
G1157617 NA non-coding downstream 48395 25192358 ~ 25192584 (+)
G1157643 NA non-coding downstream 52382 25196345 ~ 25196646 (+)
G1157653 NA non-coding downstream 62500 25206463 ~ 25206703 (+)
G1157667 NA non-coding downstream 178264 25322227 ~ 25322831 (+)
G1157117 NA other upstream 376853 24764102 ~ 24764346 (+)
G1156247 NA other upstream 812236 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1137231 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1542196 23595876 ~ 23608606 (+)
LOC110486053 polr3f other downstream 269146 25410869 ~ 25419361 (+)
G1157952 LOC106584892 other downstream 318964 25462927 ~ 25463458 (+)
G1157972 NA other downstream 329159 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 712669 25813029 ~ 25872772 (+)
G1158563 NA other downstream 966533 26110496 ~ 26115864 (+)

Expression


Co-expression Network