LOC110486045 (s5a2)


Basic Information

Item Value
gene id LOC110486045
gene name s5a2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 25168165 ~ 25188384 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557360.2
CTCTCCCATTCACACACGTCTCACACCAGCATACACAGATGGAGGCTACTCGGTCTTGACAAAGCGTGGAGACCGTGGAAACTTTGCTGGACCCAAGGACccaaagaaagagaaggagaaaaaaggagaaaaggagagggggataATAATGGAGTGTAAGGAGAATGTGATCCACTACCTCAGCTGGGGATTCATCATCAGTGGGGTAGCATATCTCTTTCAGCAGACCAGGACCCAGACCCCGTATGGACGCTACGTGACCTCGGATGGGACCCCAGGGAGGACCTGTCCTGCCAAGCTGGCCTGGTTCCTCCAGGAACTGCCTTCTTTCCTGGTGCCCATGCTCCTTCTGCTATCCACTGACACACAGCCCAGCCTGGGCAAAGACCTGCTTCTCTGGACCTTCTGTCTGCACTACTTCCAAAGAACATTCATCTACTCCTTGCTGACCAAAGGCCGCCCTTCCCCTCTCTACATTGTCTTCTCTGCGGTAGTCTTCTGCTCTGTCAACGGTTTTCTCCAAGGCCACTACATGCTCCACTGTGCCACGTACGATGATGCGTGGCGGACCGACATTCGTCTGTACACCGGTTTGCTGATATTTTTTCTGGGAATGGCCATCAACATTCACAGTGACCACATACTTCTAAATTTGAGAAAACCCGGAGAAGTTGTTTACAAGATTCCCAAAGGGGGAATGTTTGAGTATGTCTCCGGAGCAAATTTCTTTGGAGAGATTATGGAGTGGTGCGGGTATGCCCTAGCAACGTGGTCCCTGCCGACATTCTCCTTTGCCCTTTTCACTATGTGCTCGATCGGACCGCGGGCCTACCACCACCACAGGTACTACCAAGAGAAGTTTGAAGACTACCCCCAGTCGAGGAAAGCTGTGATACCTTTCATATTATAAGAAGAACAGAAAACCAGAGAAGCCTTAATAAATGGACTGACCTAGCTAAAATCATTAGTCATGGCCATGATATTGGCATTTACGGAACTCTGAAATGAAATGCTTTCATTAACTAGACATATTCCTATCATCTCATTGTATTCAGAGCTAGATCATATTTCACACCTGCAGCAACAGATCTGTAATACCATACTCCCAAATGCTTGGAGGAATGAATTATGTGGCAGCATTCGGCATGGTCAAAGCTCAATGAAGGCTAAAGAAttcagggtgaagagaaagggggTGGTGGGTAGGTCTTGAAGGAATAAAGGAAAAACATTTTTTCATTCGAAAGGGACGACTGACTGCCTTTTCTTCGCTGTGCAAAAAGTGATTTCTTAGATGCACTACTTCACTTTTGGAAAGGCTCATTAAACCTCCGCTTATTTACCTTGTGGTCTGA

Function

NR:

description
3-oxo-5-alpha-steroid 4-dehydrogenase 2-like

GO:

id name namespace
GO:0008202 steroid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function

KEGG:

id description
K12344 SRD5A2; 3-oxo-5-alpha-steroid 4-dehydrogenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557360.2 True 1355 mRNA 0.47 5 25168165 25188384

Neighbor

gene id symbol gene type direction distance location
LOC110486044 LOC106586224 coding upstream 24202 25141199 ~ 25143963 (+)
LOC118938245 NA coding upstream 63435 25093545 ~ 25104730 (+)
ifm3 ifm3 coding upstream 65513 25101524 ~ 25102652 (+)
LOC110486040 ifm3 coding upstream 76425 25090565 ~ 25091740 (+)
iip iip coding upstream 95489 25071552 ~ 25072676 (+)
LOC110486047 tmem63b coding downstream 32152 25220536 ~ 25319211 (+)
LOC110486051 LOC106584925 coding downstream 174445 25362829 ~ 25376936 (+)
LOC118938060 NA coding downstream 202112 25390496 ~ 25392938 (+)
LOC110486052 LOC106584902 coding downstream 207747 25396131 ~ 25404252 (+)
LOC110486053 polr3f coding downstream 222485 25410869 ~ 25419361 (+)
G1157292 NA non-coding upstream 81755 25082584 ~ 25105138 (+)
G1157309 NA non-coding upstream 97142 25070642 ~ 25071023 (+)
G1157286 NA non-coding upstream 141700 25026262 ~ 25026465 (+)
G1157284 NA non-coding upstream 144331 25023473 ~ 25023834 (+)
G1157282 NA non-coding upstream 146503 25021366 ~ 25021662 (+)
G1157617 NA non-coding downstream 3974 25192358 ~ 25192584 (+)
G1157643 NA non-coding downstream 7961 25196345 ~ 25196646 (+)
G1157653 NA non-coding downstream 18079 25206463 ~ 25206703 (+)
G1157667 NA non-coding downstream 133843 25322227 ~ 25322831 (+)
G1157117 NA other upstream 403819 24764102 ~ 24764346 (+)
G1156247 NA other upstream 839202 24326783 ~ 24328963 (+)
G1156089 NA other upstream 1164197 23998646 ~ 24003968 (+)
LOC110485992 LOC106585723 other upstream 1569162 23595876 ~ 23608606 (+)
G1157952 LOC106584892 other downstream 274543 25462927 ~ 25463458 (+)
G1157972 NA other downstream 284738 25473122 ~ 25473978 (+)
LOC110516920 LOC106578598 other downstream 668248 25813029 ~ 25872772 (+)
G1158563 NA other downstream 922112 26110496 ~ 26115864 (+)

Expression


Co-expression Network